data_BO3
#
_chem_comp.id BO3
_chem_comp.name "BORIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "B H3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 61.833
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BO3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1A95
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BO3 B B B 0 1 N N N N N N 23.746 108.467 17.162 -0.021 0.000 -0.021 B BO3 1
BO3 O1 O1 O 0 1 N N N N N N 24.800 108.060 16.408 -1.021 0.000 0.987 O1 BO3 2
BO3 O2 O2 O 0 1 N N N N N N 22.533 107.876 17.004 -0.395 0.000 -1.391 O2 BO3 3
BO3 O3 O3 O 0 1 N N N N N N 23.912 109.442 18.095 1.351 0.000 0.340 O3 BO3 4
BO3 HO1 HO1 H 0 1 N N N N N N 25.648 108.473 16.518 -0.560 0.000 1.837 HO1 BO3 5
BO3 HO2 HO2 H 0 1 N N N N N N 21.795 108.160 17.531 0.424 0.000 -1.904 HO2 BO3 6
BO3 HO3 HO3 H 0 1 N N N N N N 23.174 109.726 18.622 1.386 0.000 1.306 HO3 BO3 7
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BO3 B O1 SING N N 1
BO3 B O2 SING N N 2
BO3 B O3 SING N N 3
BO3 O1 HO1 SING N N 4
BO3 O2 HO2 SING N N 5
BO3 O3 HO3 SING N N 6
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BO3 SMILES ACDLabs 10.04 OB(O)O
BO3 SMILES_CANONICAL CACTVS 3.341 OB(O)O
BO3 SMILES CACTVS 3.341 OB(O)O
BO3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 B(O)(O)O
BO3 SMILES "OpenEye OEToolkits" 1.5.0 B(O)(O)O
BO3 InChI InChI 1.03 InChI=1S/BH3O3/c2-1(3)4/h2-4H
BO3 InChIKey InChI 1.03 KGBXLFKZBHKPEV-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BO3 "SYSTEMATIC NAME" ACDLabs 10.04 "boric acid"
BO3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "boric acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BO3 'Create component' 1999-07-08 RCSB
BO3 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id BO3
_pdbe_chem_comp_drugbank_details.drugbank_id DB11326
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Boric acid'
_pdbe_chem_comp_drugbank_details.description
'Boric acid, also known as hydrogen borate, is a weak monobasic Lewis acid of boron with the chemical formula H3BO3. Boric acid is typically utilized in industrial processing and manufacturing, but is also used as an additive in pharmaceutical products, cosmetics, lotions, soaps, mouthwash, toothpaste, astringents, and eyewashes [L2140]. It is known to exhibit some antibacterial activity against infections such as bacterial vaginosis and candidiasis [A32449].'
_pdbe_chem_comp_drugbank_details.cas_number 10043-35-3
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Information regarding the mechanism of action of boric acid in mediating its antibacterial or antifungal actions is limited. Boric acid inhibits biofilm formation and hyphal transformation of _Candida albicans_, which are critical virulence factors [A32457]. In addition, arrest of fungal growth was observed with the treatment of boric acid [A32457].'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
BO3 'Boric Acid' ChEMBL 'International Nonproprietary Name'
BO3 'boracic acid' DrugBank ?
BO3 'Boric acid' DrugBank ?
BO3 'hydrogen borate' DrugBank ?
BO3 'orthoboric acid' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id BO3
_pdbe_chem_comp_drugbank_classification.drugbank_id DB11326
_pdbe_chem_comp_drugbank_classification.parent 'Miscellaneous borates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Inorganic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Miscellaneous mixed metal/non-metals'
_pdbe_chem_comp_drugbank_classification.superclass 'Mixed metal/non-metal compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of inorganic compounds known as miscellaneous borates. These are inorganic compounds in which the largest metallic oxoanion is borate, to which either no atom or a non metal atom is bonded.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BO3 B B 5.104 0.608 1
BO3 O1 O 6.404 1.357 2
BO3 O2 O 3.805 1.357 3
BO3 O3 O 5.104 -0.892 4
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BO3 B O1 SINGLE NONE 1
BO3 B O2 SINGLE NONE 2
BO3 B O3 SINGLE NONE 3
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id BO3
_pdbe_chem_comp_rdkit_properties.exactmw 62.018
_pdbe_chem_comp_rdkit_properties.amw 61.833
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 4
_pdbe_chem_comp_rdkit_properties.NumAtoms 7
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 28.159
_pdbe_chem_comp_rdkit_properties.tpsa 60.690
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.052
_pdbe_chem_comp_rdkit_properties.CrippenMR 12.410
_pdbe_chem_comp_rdkit_properties.chi0v 1.802
_pdbe_chem_comp_rdkit_properties.chi1v 0.707
_pdbe_chem_comp_rdkit_properties.chi2v 0
_pdbe_chem_comp_rdkit_properties.chi3v 0
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 4.802
_pdbe_chem_comp_rdkit_properties.chi1n 1.932
_pdbe_chem_comp_rdkit_properties.chi2n 0
_pdbe_chem_comp_rdkit_properties.chi3n 0
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.055
_pdbe_chem_comp_rdkit_properties.kappa1 0.968
_pdbe_chem_comp_rdkit_properties.kappa2 1.285
_pdbe_chem_comp_rdkit_properties.kappa3 572.742
_pdbe_chem_comp_rdkit_properties.Phi 0.311
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BO3 UniChem ChEMBL CHEMBL42403
BO3 UniChem DrugBank DB11326
BO3 UniChem PDBe BO3
BO3 UniChem 'KEGG LIGAND' C12486
BO3 UniChem ChEBI 33118
BO3 UniChem ZINC ZINC000245189278
BO3 UniChem fdasrs R57ZHV85D4
BO3 UniChem HMDB HMDB0035731
BO3 UniChem 'PubChem TPHARMA' 15170325
BO3 UniChem NMRShiftDB 30001402
BO3 UniChem ACTor 10043-35-3
BO3 UniChem ACTor 11113-50-1
BO3 UniChem ACTor 11129-12-7
BO3 UniChem ACTor 12258-53-6
BO3 UniChem 'EPA CompTox Dashboard' DTXSID1020194
BO3 UniChem DrugCentral 3035
BO3 UniChem BRENDA 1395
BO3 UniChem BRENDA 166107
BO3 UniChem BRENDA 44211
BO3 UniChem BRENDA 7163
BO3 UniChem BRENDA 98436
BO3 UniChem ChemicalBook CB6128144
BO3 UniChem ChemicalBook CB8874759
BO3 UniChem DailyMed 'BORIC ACID'
BO3 UniChem ClinicalTrials 'BORIC ACID'
BO3 UniChem rxnorm 'BORIC ACID'
BO3 UniChem 'Probes And Drugs' PD070503
BO3 UniChem BindingDb 39817
BO3 UniChem eMolecules 479121
BO3 UniChem SureChEMBL SCHEMBL3736
BO3 UniChem PubChem 7628
BO3 UniChem Nikkaji J43.588K
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BO3 B -0.057 0.020 -0.120 ETKDGv3 1
BO3 O1 -1.144 -0.888 0.235 ETKDGv3 2
BO3 O2 -0.172 1.447 0.170 ETKDGv3 3
BO3 O3 1.143 -0.498 -0.773 ETKDGv3 4
BO3 HO1 -1.732 -0.899 -0.562 ETKDGv3 5
BO3 HO2 0.211 1.549 1.077 ETKDGv3 6
BO3 HO3 1.752 -0.731 -0.028 ETKDGv3 7
#