data_C2T
#
_chem_comp.id C2T
_chem_comp.name "3-(1-Ethyl-1,1-dimethylhydrazin-1-ium-2-yl)propanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H17 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2013-04-02
_chem_comp.pdbx_modified_date 2014-09-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 161.222
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code C2T
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4BHG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
C2T C1 C1 C 0 1 N N N N N N 21.733 27.667 87.451 -3.101 -0.025 -0.004 C1 C2T 1
C2T N1 N1 N 0 1 N N N N N N 21.870 30.917 86.932 0.577 0.813 -0.027 N1 C2T 2
C2T O1 O1 O 0 1 N N N N N N 22.835 27.617 86.873 -4.321 0.536 -0.019 O1 C2T 3
C2T C2 C2 C 0 1 N N N N N N 21.344 28.884 88.262 -1.871 0.846 -0.028 C2 C2T 4
C2T N2 N2 N 1 1 N N N N N N 22.510 32.148 86.615 1.787 0.006 -0.006 N2 C2T 5
C2T O2 O2 O 0 1 N N N N N N 20.936 26.718 87.449 -2.989 -1.227 0.033 O2 C2T 6
C2T C3 C3 C 0 1 N N N N N N 22.245 30.106 88.093 -0.621 -0.036 -0.004 C3 C2T 7
C2T C4 C4 C 0 1 N N N N N N 21.824 32.816 85.506 1.811 -0.809 1.216 C4 C2T 8
C2T C5 C5 C 0 1 N N N N N N 23.923 31.954 86.208 1.810 -0.873 -1.182 C5 C2T 9
C2T C6 C6 C 0 1 N N N N N N 22.294 33.158 87.659 2.963 0.887 -0.030 C6 C2T 10
C2T C10 C10 C 0 1 N N N N N N 23.032 32.944 88.894 4.236 0.038 -0.007 C10 C2T 11
C2T H1 H1 H 0 1 N N N N N N 22.938 26.768 86.459 -5.080 -0.064 -0.003 H1 C2T 12
C2T H21C H21C H 0 0 N N N N N N 20.324 29.173 87.970 -1.872 1.451 -0.934 H21C C2T 13
C2T H22C H22C H 0 0 N N N N N N 21.355 28.600 89.325 -1.872 1.499 0.845 H22C C2T 14
C2T HA HA H 0 1 N N N N N N 20.900 31.131 87.045 0.568 1.472 0.737 HA C2T 15
C2T H31C H31C H 0 0 N N N N N N 23.283 29.765 87.966 -0.621 -0.689 -0.877 H31C C2T 16
C2T H32C H32C H 0 0 N N N N N N 22.171 30.728 88.997 -0.621 -0.641 0.902 H32C C2T 17
C2T H41C H41C H 0 0 N N N N N N 22.333 33.764 85.277 0.938 -1.462 1.234 H41C C2T 18
C2T H42C H42C H 0 0 N N N N N N 21.843 32.166 84.619 2.718 -1.413 1.232 H42C C2T 19
C2T H43C H43C H 0 0 N N N N N N 20.781 33.020 85.790 1.793 -0.156 2.089 H43C C2T 20
C2T H51C H51C H 0 0 N N N N N N 24.375 32.929 85.974 1.793 -0.269 -2.089 H51C C2T 21
C2T H52C H52C H 0 0 N N N N N N 24.480 31.480 87.030 2.717 -1.478 -1.166 H52C C2T 22
C2T H53C H53C H 0 0 N N N N N N 23.963 31.308 85.318 0.938 -1.527 -1.164 H53C C2T 23
C2T H61C H61C H 0 0 N N N N N N 22.590 34.136 87.252 2.945 1.492 -0.936 H61C C2T 24
C2T H62C H62C H 0 0 N N N N N N 21.221 33.171 87.902 2.946 1.540 0.843 H62C C2T 25
C2T H101 H101 H 0 0 N N N N N N 22.801 33.751 89.605 5.108 0.692 -0.025 H101 C2T 26
C2T H102 H102 H 0 0 N N N N N N 22.743 31.977 89.331 4.253 -0.567 0.899 H102 C2T 27
C2T H103 H103 H 0 0 N N N N N N 24.111 32.942 88.680 4.253 -0.614 -0.880 H103 C2T 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
C2T C1 O1 SING N N 1
C2T C1 C2 SING N N 2
C2T C1 O2 DOUB N N 3
C2T N1 N2 SING N N 4
C2T N1 C3 SING N N 5
C2T C2 C3 SING N N 6
C2T N2 C4 SING N N 7
C2T N2 C5 SING N N 8
C2T N2 C6 SING N N 9
C2T C6 C10 SING N N 10
C2T O1 H1 SING N N 11
C2T C2 H21C SING N N 12
C2T C2 H22C SING N N 13
C2T N1 HA SING N N 14
C2T C3 H31C SING N N 15
C2T C3 H32C SING N N 16
C2T C4 H41C SING N N 17
C2T C4 H42C SING N N 18
C2T C4 H43C SING N N 19
C2T C5 H51C SING N N 20
C2T C5 H52C SING N N 21
C2T C5 H53C SING N N 22
C2T C6 H61C SING N N 23
C2T C6 H62C SING N N 24
C2T C10 H101 SING N N 25
C2T C10 H102 SING N N 26
C2T C10 H103 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
C2T SMILES ACDLabs 12.01 O=C(O)CCN[N+](C)(C)CC
C2T InChI InChI 1.03 InChI=1S/C7H16N2O2/c1-4-9(2,3)8-6-5-7(10)11/h8H,4-6H2,1-3H3/p+1
C2T InChIKey InChI 1.03 VFMQJOHSAQMQEH-UHFFFAOYSA-O
C2T SMILES_CANONICAL CACTVS 3.385 CC[N+](C)(C)NCCC(O)=O
C2T SMILES CACTVS 3.385 CC[N+](C)(C)NCCC(O)=O
C2T SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 CC[N+](C)(C)NCCC(=O)O
C2T SMILES "OpenEye OEToolkits" 1.9.2 CC[N+](C)(C)NCCC(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
C2T "SYSTEMATIC NAME" ACDLabs 12.01 2-(2-carboxyethyl)-1-ethyl-1,1-dimethylhydrazinium
C2T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 ethyl-(3-hydroxy-3-oxopropylamino)-dimethyl-azanium
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
C2T 'Create component' 2013-04-02 EBI
C2T 'Initial release' 2014-04-16 RCSB
C2T 'Modify descriptor' 2014-09-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
C2T C1 C 10.794 -0.090 1
C2T N1 N 6.897 0.660 2
C2T O1 O 12.093 0.660 3
C2T C2 C 9.495 0.660 4
C2T N2 N 5.598 -0.090 5
C2T O2 O 10.794 -1.590 6
C2T C3 C 8.196 -0.090 7
C2T C4 C 4.848 1.209 8
C2T C5 C 6.348 -1.389 9
C2T C6 C 4.299 -0.840 10
C2T C10 C 3.000 -0.090 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
C2T C1 O1 SINGLE NONE 1
C2T C1 C2 SINGLE NONE 2
C2T C1 O2 DOUBLE NONE 3
C2T N1 N2 SINGLE NONE 4
C2T N1 C3 SINGLE NONE 5
C2T C2 C3 SINGLE NONE 6
C2T N2 C4 SINGLE NONE 7
C2T N2 C5 SINGLE NONE 8
C2T N2 C6 SINGLE NONE 9
C2T C6 C10 SINGLE NONE 10
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id C2T
_pdbe_chem_comp_rdkit_properties.exactmw 161.128
_pdbe_chem_comp_rdkit_properties.amw 161.225
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.857
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 91.404
_pdbe_chem_comp_rdkit_properties.tpsa 49.330
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.062
_pdbe_chem_comp_rdkit_properties.CrippenMR 42.905
_pdbe_chem_comp_rdkit_properties.chi0v 5.211
_pdbe_chem_comp_rdkit_properties.chi1v 2.253
_pdbe_chem_comp_rdkit_properties.chi2v 0.520
_pdbe_chem_comp_rdkit_properties.chi3v 0.520
_pdbe_chem_comp_rdkit_properties.chi4v 0.171
_pdbe_chem_comp_rdkit_properties.chi0n 22.211
_pdbe_chem_comp_rdkit_properties.chi1n 10.608
_pdbe_chem_comp_rdkit_properties.chi2n 0.520
_pdbe_chem_comp_rdkit_properties.chi3n 0.520
_pdbe_chem_comp_rdkit_properties.chi4n 0.171
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.610
_pdbe_chem_comp_rdkit_properties.kappa1 1.315
_pdbe_chem_comp_rdkit_properties.kappa2 4.306
_pdbe_chem_comp_rdkit_properties.kappa3 5.816
_pdbe_chem_comp_rdkit_properties.Phi 0.515
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
C2T UniChem PDBe C2T
C2T UniChem ZINC ZINC000034156332
C2T UniChem PubChem 13794690
C2T UniChem BRENDA 223025
C2T UniChem BRENDA 223198
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
C2T C1 3.491 -0.068 -0.867 ETKDGv3 1
C2T N1 0.134 -1.175 0.522 ETKDGv3 2
C2T O1 4.040 1.169 -0.542 ETKDGv3 3
C2T C2 2.004 -0.238 -0.903 ETKDGv3 4
C2T N2 -1.025 -0.425 0.118 ETKDGv3 5
C2T O2 4.245 -1.053 -1.091 ETKDGv3 6
C2T C3 1.456 -0.504 0.507 ETKDGv3 7
C2T C4 -1.148 -0.405 -1.366 ETKDGv3 8
C2T C5 -2.178 -1.175 0.674 ETKDGv3 9
C2T C6 -1.001 0.963 0.685 ETKDGv3 10
C2T C10 -2.304 1.763 0.511 ETKDGv3 11
C2T H1 5.044 1.296 -0.497 ETKDGv3 12
C2T H21C 1.747 -1.076 -1.586 ETKDGv3 13
C2T H22C 1.575 0.701 -1.304 ETKDGv3 14
C2T HA 0.198 -2.086 0.007 ETKDGv3 15
C2T H31C 2.161 -1.190 1.027 ETKDGv3 16
C2T H32C 1.469 0.418 1.122 ETKDGv3 17
C2T H41C -2.189 -0.182 -1.687 ETKDGv3 18
C2T H42C -0.882 -1.388 -1.813 ETKDGv3 19
C2T H43C -0.516 0.377 -1.827 ETKDGv3 20
C2T H51C -2.150 -2.241 0.354 ETKDGv3 21
C2T H52C -3.153 -0.769 0.326 ETKDGv3 22
C2T H53C -2.163 -1.155 1.786 ETKDGv3 23
C2T H61C -0.206 1.566 0.195 ETKDGv3 24
C2T H62C -0.770 0.924 1.773 ETKDGv3 25
C2T H101 -3.114 1.357 1.151 ETKDGv3 26
C2T H102 -2.130 2.812 0.832 ETKDGv3 27
C2T H103 -2.631 1.785 -0.548 ETKDGv3 28
#