data_C8F
#
_chem_comp.id C8F
_chem_comp.name
8-(4-fluorophenyl)-N-{(1S,2S,3R)-1-[(alpha-D-galactopyranosyloxy)methyl]-2,3-dihydroxyheptadecyl}octanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C38 H66 F N O9"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
"(2S,3S,4R)-N-4-FLUOROPHENYLOCTANOYL- 1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-04-07
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 699.930
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code C8F
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3GMO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
C8F F F F 0 1 N N N N N N -4.356 -13.381 8.710 -12.516 7.781 0.814 F C8F 1
C8F CL CL C 0 1 Y N N N N N -3.348 -13.135 9.560 -11.495 7.089 0.264 CL C8F 2
C8F CK1 CK1 C 0 1 Y N N N N N -2.163 -13.845 9.503 -10.224 7.638 0.231 CK1 C8F 3
C8F CJ1 CJ1 C 0 1 Y N N N N N -1.123 -13.519 10.382 -9.180 6.928 -0.332 CJ1 C8F 4
C8F CK2 CK2 C 0 1 Y N N N N N -3.447 -12.054 10.446 -11.717 5.827 -0.261 CK2 C8F 5
C8F CJ2 CJ2 C 0 1 Y N N N N N -2.406 -11.801 11.367 -10.671 5.120 -0.823 CJ2 C8F 6
C8F CI CI C 0 1 Y N N N N N -1.218 -12.491 11.310 -9.404 5.671 -0.861 CI C8F 7
C8F C32 C32 C 0 1 N N N N N N -0.006 -12.255 12.231 -8.265 4.899 -1.475 C32 C8F 8
C8F C31 C31 C 0 1 N N N N N N -0.363 -11.662 13.640 -7.589 4.045 -0.400 C31 C8F 9
C8F C30 C30 C 0 1 N N N N N N 0.925 -11.425 14.449 -6.433 3.261 -1.023 C30 C8F 10
C8F C29 C29 C 0 1 N N N N N N 0.593 -11.100 15.930 -5.757 2.408 0.052 C29 C8F 11
C8F C28 C28 C 0 1 N N N N N N 1.620 -10.211 16.703 -4.600 1.624 -0.571 C28 C8F 12
C8F C27 C27 C 0 1 N N N N N N 1.101 -10.037 18.146 -3.925 0.771 0.504 C27 C8F 13
C8F C26 C26 C 0 1 N N N N N N 2.155 -9.227 18.901 -2.768 -0.014 -0.119 C26 C8F 14
C8F C25 C25 C 0 1 N N N N N N 2.104 -7.821 18.416 -2.103 -0.854 0.940 C25 C8F 15
C8F O25 O25 O 0 1 N N N N N N 1.089 -7.146 18.018 -2.513 -0.828 2.081 O25 C8F 16
C8F N N N 0 1 N N N N N N 3.280 -7.214 18.404 -1.051 -1.634 0.620 N C8F 17
C8F C17 C17 C 0 1 N N S N N N 3.466 -5.829 17.976 -0.405 -2.451 1.649 C17 C8F 18
C8F C18 C18 C 0 1 N N N N N N 3.418 -4.923 19.242 -1.156 -3.776 1.796 C18 C8F 19
C8F O18 O18 O 0 1 N N N N N N 4.404 -5.321 20.212 -1.046 -4.522 0.582 O18 C8F 20
C8F C19 C19 C 0 1 N N S N N N 4.498 -4.681 21.510 -1.717 -5.784 0.613 C19 C8F 21
C8F C20 C20 C 0 1 N N R N N N 5.798 -5.149 22.178 -1.332 -6.597 -0.626 C20 C8F 22
C8F O20 O20 O 0 1 N N N N N N 6.971 -4.810 21.332 0.087 -6.760 -0.668 O20 C8F 23
C8F C21 C21 C 0 1 N N S N N N 5.741 -6.636 22.516 -1.799 -5.853 -1.881 C21 C8F 24
C8F O21 O21 O 0 1 N N N N N N 6.881 -7.005 23.269 -1.509 -6.639 -3.038 O21 C8F 25
C8F C22 C22 C 0 1 N N R N N N 4.466 -7.025 23.273 -3.309 -5.615 -1.788 C22 C8F 26
C8F O22 O22 O 0 1 N N N N N N 4.632 -6.516 24.591 -3.990 -6.871 -1.763 O22 C8F 27
C8F C23 C23 C 0 1 N N R N N N 3.219 -6.452 22.606 -3.618 -4.839 -0.505 C23 C8F 28
C8F C24 C24 C 0 1 N N N N N N 2.032 -6.571 23.570 -5.130 -4.650 -0.375 C24 C8F 29
C8F O24 O24 O 0 1 N N N N N N 0.889 -6.071 22.847 -5.411 -3.828 0.760 O24 C8F 30
C8F O19 O19 O 0 1 N N N N N N 3.313 -5.051 22.223 -3.131 -5.572 0.621 O19 C8F 31
C8F C16 C16 C 0 1 N N S N N N 4.813 -5.609 17.331 1.045 -2.728 1.244 C16 C8F 32
C8F O16 O16 O 0 1 N N N N N N 4.792 -4.238 17.009 1.637 -3.629 2.182 O16 C8F 33
C8F C15 C15 C 0 1 N N R N N N 5.020 -6.445 16.079 1.831 -1.416 1.231 C15 C8F 34
C8F O15 O15 O 0 1 N N N N N N 6.256 -6.051 15.478 1.238 -0.515 0.294 O15 C8F 35
C8F C14 C14 C 0 1 N N N N N N 3.941 -6.236 14.996 3.280 -1.693 0.826 C14 C8F 36
C8F C13 C13 C 0 1 N N N N N N 4.329 -6.918 13.646 4.095 -0.403 0.934 C13 C8F 37
C8F C12 C12 C 0 1 N N N N N N 4.355 -8.448 13.852 5.544 -0.681 0.529 C12 C8F 38
C8F C11 C11 C 0 1 N N N N N N 4.471 -9.299 12.545 6.360 0.609 0.636 C11 C8F 39
C8F C10 C10 C 0 1 N N N N N N 5.613 -8.949 11.576 7.809 0.332 0.231 C10 C8F 40
C8F C9 C9 C 0 1 N N N N N N 5.672 -9.990 10.464 8.624 1.622 0.338 C9 C8F 41
C8F C8 C8 C 0 1 N N N N N N 6.818 -9.477 9.571 10.074 1.345 -0.067 C8 C8F 42
C8F C7 C7 C 0 1 N N N N N N 7.217 -10.142 8.277 10.889 2.635 0.041 C7 C8F 43
C8F C6 C6 C 0 1 N N N N N N 7.747 -8.995 7.392 12.338 2.357 -0.364 C6 C8F 44
C8F C5 C5 C 0 1 N N N N N N 8.533 -9.416 6.160 13.154 3.647 -0.257 C5 C8F 45
C8F C4 C4 C 0 1 N N N N N N 7.862 -8.812 4.957 14.603 3.370 -0.662 C4 C8F 46
C8F C3 C3 C 0 1 N N N N N N 8.699 -7.923 4.092 15.418 4.660 -0.554 C3 C8F 47
C8F C2 C2 C 0 1 N N N N N N 8.855 -6.570 4.714 16.867 4.383 -0.959 C2 C8F 48
C8F C1 C1 C 0 1 N N N N N N 8.924 -5.544 3.608 17.683 5.673 -0.852 C1 C8F 49
C8F HK1 HK1 H 0 1 N N N N N N -2.041 -14.644 8.787 -10.049 8.620 0.643 HK1 C8F 50
C8F HJ1 HJ1 H 0 1 N N N N N N -0.208 -14.091 10.336 -8.189 7.356 -0.358 HJ1 C8F 51
C8F HK2 HK2 H 0 1 N N N N N N -4.318 -11.415 10.425 -12.707 5.396 -0.232 HK2 C8F 52
C8F HJ2 HJ2 H 0 1 N N N N N N -2.546 -11.051 12.131 -10.844 4.135 -1.233 HJ2 C8F 53
C8F H32 H32 H 0 1 N N N N N N 0.490 -13.224 12.390 -8.648 4.252 -2.264 H32 C8F 54
C8F H32A H32A H 0 0 N N N N N N 0.631 -11.512 11.729 -7.539 5.595 -1.896 H32A C8F 55
C8F H31 H31 H 0 1 N N N N N N -0.892 -10.707 13.510 -7.206 4.692 0.390 H31 C8F 56
C8F H31A H31A H 0 0 N N N N N N -1.005 -12.373 14.181 -8.315 3.349 0.021 H31A C8F 57
C8F H30 H30 H 0 1 N N N N N N 1.545 -12.333 14.411 -6.816 2.615 -1.812 H30 C8F 58
C8F H30A H30A H 0 0 N N N N N N 1.465 -10.572 14.012 -5.707 3.957 -1.444 H30A C8F 59
C8F H29 H29 H 0 1 N N N N N N -0.368 -10.564 15.936 -5.374 3.055 0.842 H29 C8F 60
C8F H29A H29A H 0 0 N N N N N N 0.596 -12.069 16.450 -6.483 1.712 0.473 H29A C8F 61
C8F H28 H28 H 0 1 N N N N N N 2.607 -10.697 16.713 -4.984 0.977 -1.360 H28 C8F 62
C8F H28A H28A H 0 0 N N N N N N 1.725 -9.232 16.213 -3.875 2.320 -0.992 H28A C8F 63
C8F H27 H27 H 0 1 N N N N N N 0.138 -9.505 18.145 -3.542 1.417 1.294 H27 C8F 64
C8F H27A H27A H 0 0 N N N N N N 0.938 -11.013 18.625 -4.650 0.075 0.925 H27A C8F 65
C8F H26 H26 H 0 1 N N N N N N 1.946 -9.257 19.981 -3.151 -0.660 -0.908 H26 C8F 66
C8F H26A H26A H 0 0 N N N N N N 3.155 -9.651 18.724 -2.042 0.683 -0.540 H26A C8F 67
C8F HN HN H 0 1 N N N N N N 4.083 -7.730 18.703 -0.723 -1.655 -0.293 HN C8F 68
C8F H17 H17 H 0 1 N N N N N N 2.677 -5.592 17.247 -0.420 -1.918 2.600 H17 C8F 69
C8F H18 H18 H 0 1 N N N N N N 3.615 -3.883 18.942 -0.724 -4.350 2.615 H18 C8F 70
C8F H18A H18A H 0 0 N N N N N N 2.423 -5.020 19.700 -2.206 -3.576 2.006 H18A C8F 71
C8F H19 H19 H 0 1 N N N N N N 4.548 -3.583 21.468 -1.426 -6.328 1.510 H19 C8F 72
C8F H20 H20 H 0 1 N N N N N N 5.913 -4.612 23.131 -1.811 -7.575 -0.582 H20 C8F 73
C8F HO20 HO20 H 0 0 N N N N N N 6.698 -4.738 20.425 0.452 -7.221 0.100 HO20 C8F 74
C8F H21 H21 H 0 1 N N N N N N 5.728 -7.182 21.561 -1.281 -4.896 -1.951 H21 C8F 75
C8F HO21 HO21 H 0 0 N N N N N N 7.630 -7.088 22.691 -0.569 -6.835 -3.156 HO21 C8F 76
C8F H22 H22 H 0 1 N N N N N N 4.321 -8.115 23.278 -3.641 -5.038 -2.652 H22 C8F 77
C8F HO22 HO22 H 0 0 N N N N N N 4.669 -7.238 25.207 -3.835 -7.418 -2.545 HO22 C8F 78
C8F H23 H23 H 0 1 N N N N N N 3.095 -7.038 21.683 -3.131 -3.865 -0.543 H23 C8F 79
C8F H24 H24 H 0 1 N N N N N N 1.876 -7.618 23.869 -5.515 -4.171 -1.275 H24 C8F 80
C8F H24A H24A H 0 0 N N N N N N 2.205 -6.002 24.496 -5.609 -5.621 -0.247 H24A C8F 81
C8F HO24 HO24 H 0 0 N N N N N N 0.159 -5.961 23.445 -6.354 -3.665 0.904 HO24 C8F 82
C8F H16 H16 H 0 1 N N N N N N 5.636 -5.905 17.998 1.065 -3.174 0.250 H16 C8F 83
C8F HO16 HO16 H 0 0 N N N N N N 4.787 -3.725 17.808 1.585 -3.331 3.100 HO16 C8F 84
C8F H15 H15 H 0 1 N N N N N N 4.988 -7.495 16.405 1.810 -0.970 2.226 H15 C8F 85
C8F HO15 HO15 H 0 0 N N N N N N 6.139 -5.964 14.539 1.222 -0.847 -0.614 HO15 C8F 86
C8F H14 H14 H 0 1 N N N N N N 2.996 -6.673 15.352 3.704 -2.448 1.489 H14 C8F 87
C8F H14A H14A H 0 0 N N N N N N 3.842 -5.155 14.817 3.307 -2.056 -0.201 H14A C8F 88
C8F H13 H13 H 0 1 N N N N N N 3.589 -6.660 12.874 3.671 0.351 0.271 H13 C8F 89
C8F H13A H13A H 0 0 N N N N N N 5.320 -6.568 13.321 4.068 -0.041 1.961 H13A C8F 90
C8F H12 H12 H 0 1 N N N N N N 5.227 -8.683 14.479 5.969 -1.435 1.191 H12 C8F 91
C8F H12A H12A H 0 0 N N N N N N 3.388 -8.713 14.305 5.571 -1.043 -0.499 H12A C8F 92
C8F H11 H11 H 0 1 N N N N N N 4.622 -10.344 12.855 5.936 1.364 -0.026 H11 C8F 93
C8F H11A H11A H 0 0 N N N N N N 3.546 -9.095 11.986 6.333 0.972 1.664 H11A C8F 94
C8F H10 H10 H 0 1 N N N N N N 5.432 -7.956 11.139 8.233 -0.422 0.894 H10 C8F 95
C8F H10A H10A H 0 0 N N N N N N 6.568 -8.941 12.122 7.836 -0.031 -0.797 H10A C8F 96
C8F H9 H9 H 0 1 N N N N N N 5.882 -10.995 10.858 8.200 2.376 -0.324 H9 C8F 97
C8F H9A H9A H 0 1 N N N N N N 4.720 -10.099 9.924 8.597 1.985 1.366 H9A C8F 98
C8F H8 H8 H 0 1 N N N N N N 6.528 -8.454 9.291 10.498 0.590 0.596 H8 C8F 99
C8F H8A H8A H 0 1 N N N N N N 7.699 -9.662 10.203 10.101 0.982 -1.094 H8A C8F 100
C8F H7 H7 H 0 1 N N N N N N 7.994 -10.902 8.446 10.465 3.389 -0.622 H7 C8F 101
C8F H7A H7A H 0 1 N N N N N N 6.375 -10.671 7.807 10.862 2.997 1.068 H7A C8F 102
C8F H6 H6 H 0 1 N N N N N N 6.877 -8.418 7.046 12.762 1.603 0.298 H6 C8F 103
C8F H6A H6A H 0 1 N N N N N N 8.451 -8.430 8.020 12.365 1.995 -1.392 H6A C8F 104
C8F H5 H5 H 0 1 N N N N N N 9.570 -9.056 6.233 12.729 4.402 -0.919 H5 C8F 105
C8F H5A H5A H 0 1 N N N N N N 8.555 -10.513 6.076 13.127 4.010 0.771 H5A C8F 106
C8F H4 H4 H 0 1 N N N N N N 7.518 -9.645 4.327 15.027 2.616 0.001 H4 C8F 107
C8F H4A H4A H 0 1 N N N N N N 7.069 -8.165 5.359 14.630 3.007 -1.689 H4A C8F 108
C8F H3 H3 H 0 1 N N N N N N 9.693 -8.377 3.967 14.994 5.414 -1.217 H3 C8F 109
C8F H3A H3A H 0 1 N N N N N N 8.202 -7.809 3.117 15.391 5.023 0.473 H3A C8F 110
C8F H2 H2 H 0 1 N N N N N N 7.996 -6.358 5.367 17.292 3.628 -0.297 H2 C8F 111
C8F H2A H2A H 0 1 N N N N N N 9.773 -6.536 5.319 16.894 4.020 -1.987 H2A C8F 112
C8F H1 H1 H 0 1 N N N N N N 8.941 -4.534 4.044 18.715 5.475 -1.141 H1 C8F 113
C8F H1A H1A H 0 1 N N N N N N 9.838 -5.703 3.017 17.258 6.427 -1.515 H1A C8F 114
C8F H1B H1B H 0 1 N N N N N N 8.043 -5.647 2.957 17.656 6.035 0.176 H1B C8F 115
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
C8F F CL SING N N 1
C8F CL CK1 DOUB Y N 2
C8F CL CK2 SING Y N 3
C8F CK1 CJ1 SING Y N 4
C8F CJ1 CI DOUB Y N 5
C8F CK2 CJ2 DOUB Y N 6
C8F CJ2 CI SING Y N 7
C8F CI C32 SING N N 8
C8F C32 C31 SING N N 9
C8F C31 C30 SING N N 10
C8F C30 C29 SING N N 11
C8F C29 C28 SING N N 12
C8F C28 C27 SING N N 13
C8F C27 C26 SING N N 14
C8F C26 C25 SING N N 15
C8F C25 O25 DOUB N N 16
C8F C25 N SING N N 17
C8F N C17 SING N N 18
C8F C17 C18 SING N N 19
C8F C17 C16 SING N N 20
C8F C18 O18 SING N N 21
C8F O18 C19 SING N N 22
C8F C19 C20 SING N N 23
C8F C19 O19 SING N N 24
C8F C20 O20 SING N N 25
C8F C20 C21 SING N N 26
C8F C21 O21 SING N N 27
C8F C21 C22 SING N N 28
C8F C22 O22 SING N N 29
C8F C22 C23 SING N N 30
C8F C23 C24 SING N N 31
C8F C23 O19 SING N N 32
C8F C24 O24 SING N N 33
C8F C16 O16 SING N N 34
C8F C16 C15 SING N N 35
C8F C15 O15 SING N N 36
C8F C15 C14 SING N N 37
C8F C14 C13 SING N N 38
C8F C13 C12 SING N N 39
C8F C12 C11 SING N N 40
C8F C11 C10 SING N N 41
C8F C10 C9 SING N N 42
C8F C9 C8 SING N N 43
C8F C8 C7 SING N N 44
C8F C7 C6 SING N N 45
C8F C6 C5 SING N N 46
C8F C5 C4 SING N N 47
C8F C4 C3 SING N N 48
C8F C3 C2 SING N N 49
C8F C2 C1 SING N N 50
C8F CK1 HK1 SING N N 51
C8F CJ1 HJ1 SING N N 52
C8F CK2 HK2 SING N N 53
C8F CJ2 HJ2 SING N N 54
C8F C32 H32 SING N N 55
C8F C32 H32A SING N N 56
C8F C31 H31 SING N N 57
C8F C31 H31A SING N N 58
C8F C30 H30 SING N N 59
C8F C30 H30A SING N N 60
C8F C29 H29 SING N N 61
C8F C29 H29A SING N N 62
C8F C28 H28 SING N N 63
C8F C28 H28A SING N N 64
C8F C27 H27 SING N N 65
C8F C27 H27A SING N N 66
C8F C26 H26 SING N N 67
C8F C26 H26A SING N N 68
C8F N HN SING N N 69
C8F C17 H17 SING N N 70
C8F C18 H18 SING N N 71
C8F C18 H18A SING N N 72
C8F C19 H19 SING N N 73
C8F C20 H20 SING N N 74
C8F O20 HO20 SING N N 75
C8F C21 H21 SING N N 76
C8F O21 HO21 SING N N 77
C8F C22 H22 SING N N 78
C8F O22 HO22 SING N N 79
C8F C23 H23 SING N N 80
C8F C24 H24 SING N N 81
C8F C24 H24A SING N N 82
C8F O24 HO24 SING N N 83
C8F C16 H16 SING N N 84
C8F O16 HO16 SING N N 85
C8F C15 H15 SING N N 86
C8F O15 HO15 SING N N 87
C8F C14 H14 SING N N 88
C8F C14 H14A SING N N 89
C8F C13 H13 SING N N 90
C8F C13 H13A SING N N 91
C8F C12 H12 SING N N 92
C8F C12 H12A SING N N 93
C8F C11 H11 SING N N 94
C8F C11 H11A SING N N 95
C8F C10 H10 SING N N 96
C8F C10 H10A SING N N 97
C8F C9 H9 SING N N 98
C8F C9 H9A SING N N 99
C8F C8 H8 SING N N 100
C8F C8 H8A SING N N 101
C8F C7 H7 SING N N 102
C8F C7 H7A SING N N 103
C8F C6 H6 SING N N 104
C8F C6 H6A SING N N 105
C8F C5 H5 SING N N 106
C8F C5 H5A SING N N 107
C8F C4 H4 SING N N 108
C8F C4 H4A SING N N 109
C8F C3 H3 SING N N 110
C8F C3 H3A SING N N 111
C8F C2 H2 SING N N 112
C8F C2 H2A SING N N 113
C8F C1 H1 SING N N 114
C8F C1 H1A SING N N 115
C8F C1 H1B SING N N 116
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
C8F SMILES ACDLabs 10.04 Fc1ccc(cc1)CCCCCCCC(=O)NC(COC2OC(C(O)C(O)C2O)CO)C(O)C(O)CCCCCCCCCCCCCC
C8F SMILES_CANONICAL CACTVS 3.341 CCCCCCCCCCCCCC[C@@H](O)[C@@H](O)[C@H](CO[C@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O)NC(=O)CCCCCCCc2ccc(F)cc2
C8F SMILES CACTVS 3.341 CCCCCCCCCCCCCC[CH](O)[CH](O)[CH](CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)NC(=O)CCCCCCCc2ccc(F)cc2
C8F SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCCCC[C@H]([C@H]([C@H](CO[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)NC(=O)CCCCCCCc2ccc(cc2)F)O)O
C8F SMILES "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCCCCC(C(C(COC1C(C(C(C(O1)CO)O)O)O)NC(=O)CCCCCCCc2ccc(cc2)F)O)O
C8F InChI InChI 1.03 InChI=1S/C38H66FNO9/c1-2-3-4-5-6-7-8-9-10-11-14-17-20-31(42)34(44)30(27-48-38-37(47)36(46)35(45)32(26-41)49-38)40-33(43)21-18-15-12-13-16-19-28-22-24-29(39)25-23-28/h22-25,30-32,34-38,41-42,44-47H,2-21,26-27H2,1H3,(H,40,43)/t30-,31+,32+,34-,35-,36-,37+,38-/m0/s1
C8F InChIKey InChI 1.03 FBUHIWMNUBFIJZ-ZORUMLJWSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
C8F "SYSTEMATIC NAME" ACDLabs 10.04 8-(4-fluorophenyl)-N-{(1S,2S,3R)-1-[(alpha-D-galactopyranosyloxy)methyl]-2,3-dihydroxyheptadecyl}octanamide
C8F "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 N-[(2S,3S,4R)-3,4-dihydroxy-1-[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-octadecan-2-yl]-8-(4-fluorophenyl)octanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
C8F 'Create component' 2009-04-07 RCSB
C8F 'Modify aromatic_flag' 2011-06-04 RCSB
C8F 'Modify descriptor' 2011-06-04 RCSB
C8F 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id C8F
_pdbx_chem_comp_synonyms.name
"(2S,3S,4R)-N-4-FLUOROPHENYLOCTANOYL- 1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id C8F
_pdbe_chem_comp_synonyms.name
'(2S,3S,4R)-N-4-FLUOROPHENYLOCTANOYL- 1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
C8F F F 30.280 -3.143 1
C8F CL C 28.981 -3.893 2
C8F CK1 C 28.981 -5.393 3
C8F CJ1 C 27.682 -6.143 4
C8F CK2 C 27.682 -3.143 5
C8F CJ2 C 26.383 -3.893 6
C8F CI C 26.383 -5.393 7
C8F C32 C 25.084 -6.143 8
C8F C31 C 23.785 -5.393 9
C8F C30 C 22.486 -6.143 10
C8F C29 C 21.187 -5.393 11
C8F C28 C 19.887 -6.143 12
C8F C27 C 18.588 -5.393 13
C8F C26 C 17.290 -6.143 14
C8F C25 C 15.990 -5.393 15
C8F O25 O 15.990 -3.893 16
C8F N N 14.691 -6.143 17
C8F C17 C 13.392 -5.393 18
C8F C18 C 12.093 -6.143 19
C8F O18 O 12.093 -7.643 20
C8F C19 C 10.794 -8.393 21
C8F C20 C 10.794 -9.893 22
C8F O20 O 12.093 -10.643 23
C8F C21 C 9.495 -10.643 24
C8F O21 O 9.495 -12.143 25
C8F C22 C 8.196 -9.893 26
C8F O22 O 6.897 -10.643 27
C8F C23 C 8.196 -8.393 28
C8F C24 C 6.897 -7.643 29
C8F O24 O 6.897 -6.143 30
C8F O19 O 9.495 -7.643 31
C8F C16 C 13.392 -3.893 32
C8F O16 O 14.691 -3.143 33
C8F C15 C 12.093 -3.143 34
C8F O15 O 10.794 -3.893 35
C8F C14 C 12.093 -1.643 36
C8F C13 C 10.794 -0.892 37
C8F C12 C 10.794 0.608 38
C8F C11 C 9.495 1.357 39
C8F C10 C 9.495 2.857 40
C8F C9 C 8.196 3.607 41
C8F C8 C 8.196 5.107 42
C8F C7 C 6.897 5.857 43
C8F C6 C 6.897 7.357 44
C8F C5 C 5.598 8.107 45
C8F C4 C 5.598 9.607 46
C8F C3 C 4.299 10.357 47
C8F C2 C 4.299 11.857 48
C8F C1 C 3.000 12.607 49
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
C8F F CL SINGLE NONE 1
C8F CL CK1 DOUBLE NONE 2
C8F CL CK2 SINGLE NONE 3
C8F CK1 CJ1 SINGLE NONE 4
C8F CJ1 CI DOUBLE NONE 5
C8F CK2 CJ2 DOUBLE NONE 6
C8F CJ2 CI SINGLE NONE 7
C8F CI C32 SINGLE NONE 8
C8F C32 C31 SINGLE NONE 9
C8F C31 C30 SINGLE NONE 10
C8F C30 C29 SINGLE NONE 11
C8F C29 C28 SINGLE NONE 12
C8F C28 C27 SINGLE NONE 13
C8F C27 C26 SINGLE NONE 14
C8F C26 C25 SINGLE NONE 15
C8F C25 O25 DOUBLE NONE 16
C8F C25 N SINGLE NONE 17
C8F N C17 SINGLE NONE 18
C8F C17 C18 SINGLE BEGINWEDGE 19
C8F C17 C16 SINGLE NONE 20
C8F C18 O18 SINGLE NONE 21
C8F C19 O18 SINGLE BEGINDASH 22
C8F C19 C20 SINGLE NONE 23
C8F C19 O19 SINGLE NONE 24
C8F C20 O20 SINGLE BEGINDASH 25
C8F C20 C21 SINGLE NONE 26
C8F C21 O21 SINGLE BEGINWEDGE 27
C8F C21 C22 SINGLE NONE 28
C8F C22 O22 SINGLE BEGINWEDGE 29
C8F C22 C23 SINGLE NONE 30
C8F C23 C24 SINGLE BEGINWEDGE 31
C8F C23 O19 SINGLE NONE 32
C8F C24 O24 SINGLE NONE 33
C8F C16 O16 SINGLE BEGINWEDGE 34
C8F C16 C15 SINGLE NONE 35
C8F C15 O15 SINGLE BEGINDASH 36
C8F C15 C14 SINGLE NONE 37
C8F C14 C13 SINGLE NONE 38
C8F C13 C12 SINGLE NONE 39
C8F C12 C11 SINGLE NONE 40
C8F C11 C10 SINGLE NONE 41
C8F C10 C9 SINGLE NONE 42
C8F C9 C8 SINGLE NONE 43
C8F C8 C7 SINGLE NONE 44
C8F C7 C6 SINGLE NONE 45
C8F C6 C5 SINGLE NONE 46
C8F C5 C4 SINGLE NONE 47
C8F C4 C3 SINGLE NONE 48
C8F C3 C2 SINGLE NONE 49
C8F C2 C1 SINGLE NONE 50
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
C8F MurckoScaffold S1 scaffold 'O=C(CCCCCCCc1ccccc1)NCCO[C@@H]1CCCCO1' InChI=1S/C21H33NO3/c23-20(22-16-18-25-21-15-9-10-17-24-21)14-8-3-1-2-5-11-19-12-6-4-7-13-19/h4,6-7,12-13,21H,1-3,5,8-11,14-18H2,(H,22,23)/t21-/m1/s1 HRYUGVYJNWLVPH-OAQYLSRUSA-N
C8F amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
C8F phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
C8F pyranose F3 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
C8F CL S1 1
C8F CK1 S1 1
C8F CJ1 S1 1
C8F CK2 S1 1
C8F CJ2 S1 1
C8F CI S1 1
C8F C32 S1 1
C8F C31 S1 1
C8F C30 S1 1
C8F C29 S1 1
C8F C28 S1 1
C8F C27 S1 1
C8F C26 S1 1
C8F C25 S1 1
C8F O25 S1 1
C8F N S1 1
C8F C17 S1 1
C8F C18 S1 1
C8F O18 S1 1
C8F C19 S1 1
C8F C20 S1 1
C8F C21 S1 1
C8F C22 S1 1
C8F C23 S1 1
C8F O19 S1 1
C8F N F1 1
C8F C25 F1 1
C8F O25 F1 1
C8F C26 F1 1
C8F CL F2 1
C8F CK1 F2 1
C8F CJ1 F2 1
C8F CI F2 1
C8F CJ2 F2 1
C8F CK2 F2 1
C8F C22 F3 1
C8F C23 F3 1
C8F O19 F3 1
C8F C19 F3 1
C8F C20 F3 1
C8F C21 F3 1
C8F O18 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id C8F
_pdbe_chem_comp_rdkit_properties.exactmw 699.472
_pdbe_chem_comp_rdkit_properties.amw 699.942
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 35
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 49
_pdbe_chem_comp_rdkit_properties.NumAtoms 115
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.816
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 8
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 386.279
_pdbe_chem_comp_rdkit_properties.tpsa 168.940
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.768
_pdbe_chem_comp_rdkit_properties.CrippenMR 186.898
_pdbe_chem_comp_rdkit_properties.chi0v 23.499
_pdbe_chem_comp_rdkit_properties.chi1v 11.882
_pdbe_chem_comp_rdkit_properties.chi2v 4.032
_pdbe_chem_comp_rdkit_properties.chi3v 4.032
_pdbe_chem_comp_rdkit_properties.chi4v 2.160
_pdbe_chem_comp_rdkit_properties.chi0n 89.499
_pdbe_chem_comp_rdkit_properties.chi1n 44.278
_pdbe_chem_comp_rdkit_properties.chi2n 4.032
_pdbe_chem_comp_rdkit_properties.chi3n 4.032
_pdbe_chem_comp_rdkit_properties.chi4n 2.160
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.700
_pdbe_chem_comp_rdkit_properties.kappa1 7.761
_pdbe_chem_comp_rdkit_properties.kappa2 26.130
_pdbe_chem_comp_rdkit_properties.kappa3 17.873
_pdbe_chem_comp_rdkit_properties.Phi 4.139
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
C8F UniChem ChEMBL CHEMBL1231634
C8F UniChem PDBe C8F
C8F UniChem ChEBI 60752
C8F UniChem ZINC ZINC000058632869
C8F UniChem 'PubChem TPHARMA' 56426650
C8F UniChem PubChem 25105144
C8F UniChem MetaboLights MTBLC60752
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
C8F F -11.814 -2.567 1.853 ETKDGv3 1
C8F CL -10.660 -3.138 1.429 ETKDGv3 2
C8F CK1 -10.344 -3.130 0.128 ETKDGv3 3
C8F CJ1 -9.084 -3.750 -0.332 ETKDGv3 4
C8F CK2 -9.747 -3.766 2.407 ETKDGv3 5
C8F CJ2 -8.607 -4.333 1.993 ETKDGv3 6
C8F CI -8.256 -4.339 0.551 ETKDGv3 7
C8F C32 -6.951 -4.938 0.100 ETKDGv3 8
C8F C31 -5.842 -3.881 0.116 ETKDGv3 9
C8F C30 -4.503 -4.478 -0.343 ETKDGv3 10
C8F C29 -3.358 -3.444 -0.316 ETKDGv3 11
C8F C28 -2.984 -2.896 -1.706 ETKDGv3 12
C8F C27 -4.067 -2.030 -2.377 ETKDGv3 13
C8F C26 -4.420 -0.744 -1.610 ETKDGv3 14
C8F C25 -3.223 0.138 -1.406 ETKDGv3 15
C8F O25 -2.710 0.722 -2.399 ETKDGv3 16
C8F N -2.658 0.297 -0.096 ETKDGv3 17
C8F C17 -1.472 1.120 0.165 ETKDGv3 18
C8F C18 -1.923 2.513 0.628 ETKDGv3 19
C8F O18 -2.748 3.087 -0.366 ETKDGv3 20
C8F C19 -3.166 4.386 0.016 ETKDGv3 21
C8F C20 -4.428 4.771 -0.815 ETKDGv3 22
C8F O20 -5.060 3.629 -1.338 ETKDGv3 23
C8F C21 -4.048 5.717 -1.961 ETKDGv3 24
C8F O21 -5.186 6.082 -2.701 ETKDGv3 25
C8F C22 -3.353 6.980 -1.398 ETKDGv3 26
C8F O22 -4.267 8.014 -1.115 ETKDGv3 27
C8F C23 -2.444 6.648 -0.176 ETKDGv3 28
C8F C24 -2.980 7.111 1.197 ETKDGv3 29
C8F O24 -2.089 6.724 2.207 ETKDGv3 30
C8F O19 -2.068 5.279 -0.171 ETKDGv3 31
C8F C16 -0.565 0.439 1.228 ETKDGv3 32
C8F O16 0.588 1.216 1.444 ETKDGv3 33
C8F C15 -0.149 -1.007 0.849 ETKDGv3 34
C8F O15 0.392 -1.634 1.986 ETKDGv3 35
C8F C14 0.825 -1.082 -0.368 ETKDGv3 36
C8F C13 2.264 -1.540 -0.060 ETKDGv3 37
C8F C12 3.068 -0.498 0.730 ETKDGv3 38
C8F C11 4.532 -0.936 0.885 ETKDGv3 39
C8F C10 5.359 0.075 1.700 ETKDGv3 40
C8F C9 5.766 1.327 0.890 ETKDGv3 41
C8F C8 7.228 1.298 0.416 ETKDGv3 42
C8F C7 7.487 0.209 -0.638 ETKDGv3 43
C8F C6 8.877 0.328 -1.288 ETKDGv3 44
C8F C5 10.063 0.173 -0.314 ETKDGv3 45
C8F C4 10.079 -1.137 0.498 ETKDGv3 46
C8F C3 10.053 -2.424 -0.346 ETKDGv3 47
C8F C2 11.285 -2.567 -1.251 ETKDGv3 48
C8F C1 11.299 -3.923 -1.950 ETKDGv3 49
C8F HK1 -11.008 -2.667 -0.590 ETKDGv3 50
C8F HJ1 -8.836 -3.720 -1.386 ETKDGv3 51
C8F HK2 -10.001 -3.764 3.459 ETKDGv3 52
C8F HJ2 -7.940 -4.786 2.716 ETKDGv3 53
C8F H32 -7.059 -5.356 -0.925 ETKDGv3 54
C8F H32A -6.677 -5.778 0.775 ETKDGv3 55
C8F H31 -5.731 -3.482 1.148 ETKDGv3 56
C8F H31A -6.133 -3.045 -0.552 ETKDGv3 57
C8F H30 -4.241 -5.310 0.347 ETKDGv3 58
C8F H30A -4.612 -4.919 -1.358 ETKDGv3 59
C8F H29 -2.452 -3.950 0.084 ETKDGv3 60
C8F H29A -3.573 -2.615 0.390 ETKDGv3 61
C8F H28 -2.749 -3.750 -2.378 ETKDGv3 62
C8F H28A -2.049 -2.305 -1.618 ETKDGv3 63
C8F H27 -4.987 -2.631 -2.531 ETKDGv3 64
C8F H27A -3.706 -1.748 -3.390 ETKDGv3 65
C8F H26 -5.178 -0.179 -2.194 ETKDGv3 66
C8F H26A -4.890 -0.989 -0.636 ETKDGv3 67
C8F HN -3.180 -0.091 0.723 ETKDGv3 68
C8F H17 -0.889 1.252 -0.771 ETKDGv3 69
C8F H18 -2.482 2.405 1.586 ETKDGv3 70
C8F H18A -1.025 3.149 0.796 ETKDGv3 71
C8F H19 -3.471 4.392 1.089 ETKDGv3 72
C8F H20 -5.152 5.304 -0.156 ETKDGv3 73
C8F HO20 -5.485 3.162 -0.571 ETKDGv3 74
C8F H21 -3.322 5.189 -2.625 ETKDGv3 75
C8F HO21 -5.376 5.337 -3.329 ETKDGv3 76
C8F H22 -2.695 7.357 -2.212 ETKDGv3 77
C8F HO22 -4.996 7.638 -0.557 ETKDGv3 78
C8F H23 -1.504 7.225 -0.324 ETKDGv3 79
C8F H24 -3.073 8.220 1.199 ETKDGv3 80
C8F H24A -3.984 6.680 1.400 ETKDGv3 81
C8F HO24 -2.484 7.041 3.060 ETKDGv3 82
C8F H16 -1.156 0.362 2.174 ETKDGv3 83
C8F HO16 0.423 1.778 2.246 ETKDGv3 84
C8F H15 -1.080 -1.552 0.571 ETKDGv3 85
C8F HO15 0.266 -2.612 1.867 ETKDGv3 86
C8F H14 0.875 -0.116 -0.912 ETKDGv3 87
C8F H14A 0.403 -1.811 -1.094 ETKDGv3 88
C8F H13 2.255 -2.511 0.481 ETKDGv3 89
C8F H13A 2.776 -1.717 -1.032 ETKDGv3 90
C8F H12 3.021 0.477 0.200 ETKDGv3 91
C8F H12A 2.625 -0.373 1.740 ETKDGv3 92
C8F H11 4.555 -1.912 1.416 ETKDGv3 93
C8F H11A 4.988 -1.088 -0.116 ETKDGv3 94
C8F H10 4.772 0.389 2.592 ETKDGv3 95
C8F H10A 6.263 -0.438 2.096 ETKDGv3 96
C8F H9 5.096 1.489 0.019 ETKDGv3 97
C8F H9A 5.647 2.216 1.546 ETKDGv3 98
C8F H8 7.892 1.148 1.294 ETKDGv3 99
C8F H8A 7.468 2.291 -0.024 ETKDGv3 100
C8F H7 6.728 0.302 -1.445 ETKDGv3 101
C8F H7A 7.368 -0.797 -0.187 ETKDGv3 102
C8F H6 8.962 -0.430 -2.095 ETKDGv3 103
C8F H6A 8.958 1.320 -1.783 ETKDGv3 104
C8F H5 11.008 0.258 -0.892 ETKDGv3 105
C8F H5A 10.067 1.028 0.395 ETKDGv3 106
C8F H4 9.215 -1.149 1.197 ETKDGv3 107
C8F H4A 10.992 -1.144 1.132 ETKDGv3 108
C8F H3 9.126 -2.469 -0.955 ETKDGv3 109
C8F H3A 10.022 -3.286 0.356 ETKDGv3 110
C8F H2 11.280 -1.774 -2.028 ETKDGv3 111
C8F H2A 12.212 -2.465 -0.645 ETKDGv3 112
C8F H1 12.193 -3.995 -2.605 ETKDGv3 113
C8F H1A 11.342 -4.743 -1.202 ETKDGv3 114
C8F H1B 10.389 -4.044 -2.575 ETKDGv3 115
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