data_C8P
#
_chem_comp.id C8P
_chem_comp.name N-{(1S,2S,3R)-1-[(alpha-D-galactopyranosyloxy)methyl]-2,3-dihydroxyheptadecyl}-8-phenyloctanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C38 H67 N O9"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms (2S,3S,4R)-N-PHENYLOCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-04-07
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 681.940
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code C8P
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3GMM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
C8P O25 O25 O 0 1 N N N N N N 1.132 -7.137 18.090 2.875 0.469 2.109 O25 C8P 1
C8P C25 C25 C 0 1 N N N N N N 2.145 -7.725 18.503 2.472 0.508 0.965 C25 C8P 2
C8P C26 C26 C 0 1 N N N N N N 2.149 -9.175 19.015 3.082 -0.389 -0.080 C26 C8P 3
C8P C27 C27 C 0 1 N N N N N N 1.052 -9.960 18.353 4.180 -1.243 0.559 C27 C8P 4
C8P C28 C28 C 0 1 N N N N N N 1.592 -10.219 16.930 4.800 -2.154 -0.503 C28 C8P 5
C8P C29 C29 C 0 1 N N N N N N 0.595 -11.194 16.172 5.897 -3.007 0.136 C29 C8P 6
C8P C30 C30 C 0 1 N N N N N N 1.067 -11.492 14.702 6.517 -3.919 -0.925 C30 C8P 7
C8P C31 C31 C 0 1 N N N N N N -0.153 -12.085 13.917 7.614 -4.772 -0.287 C31 C8P 8
C8P C32 C32 C 0 1 N N N N N N 0.207 -12.350 12.436 8.234 -5.683 -1.348 C32 C8P 9
C8P CI CI C 0 1 Y N N N N N -0.967 -12.695 11.508 9.315 -6.524 -0.719 CI C8P 10
C8P CJ2 CJ2 C 0 1 Y N N N N N -2.115 -11.929 11.472 9.004 -7.756 -0.175 CJ2 C8P 11
C8P CK2 CK2 C 0 1 Y N N N N N -3.165 -12.258 10.616 9.995 -8.528 0.402 CK2 C8P 12
C8P CL CL C 0 1 Y N N N N N -3.063 -13.385 9.792 11.298 -8.067 0.434 CL C8P 13
C8P CK1 CK1 C 0 1 Y N N N N N -1.919 -14.176 9.834 11.610 -6.835 -0.110 CK1 C8P 14
C8P CJ1 CJ1 C 0 1 Y N N N N N -0.873 -13.800 10.681 10.619 -6.066 -0.691 CJ1 C8P 15
C8P N N N 0 1 N N N N N N 3.320 -7.087 18.552 1.474 1.351 0.631 N C8P 16
C8P C17 C17 C 0 1 N N S N N N 3.421 -5.692 18.137 0.877 2.219 1.649 C17 C8P 17
C8P C18 C18 C 0 1 N N N N N N 3.341 -4.864 19.459 1.711 3.494 1.785 C18 C8P 18
C8P O18 O18 O 0 1 N N N N N N 4.443 -5.167 20.349 1.655 4.233 0.562 O18 C8P 19
C8P C19 C19 C 0 1 N N S N N N 4.493 -4.501 21.639 2.405 5.449 0.583 C19 C8P 20
C8P C20 C20 C 0 1 N N R N N N 5.682 -5.014 22.401 2.078 6.271 -0.666 C20 C8P 21
C8P O20 O20 O 0 1 N N N N N N 6.832 -4.774 21.612 0.673 6.525 -0.717 O20 C8P 22
C8P C21 C21 C 0 1 N N S N N N 5.669 -6.518 22.569 2.501 5.485 -1.911 C21 C8P 23
C8P O21 O21 O 0 1 N N N N N N 6.790 -6.896 23.368 2.268 6.276 -3.078 O21 C8P 24
C8P C22 C22 C 0 1 N N R N N N 4.418 -6.922 23.335 3.993 5.152 -1.808 C22 C8P 25
C8P O22 O22 O 0 1 N N N N N N 4.638 -6.445 24.669 4.753 6.362 -1.793 O22 C8P 26
C8P C23 C23 C 0 1 N N R N N N 3.203 -6.273 22.681 4.246 4.372 -0.515 C23 C8P 27
C8P C24 C24 C 0 1 N N N N N N 1.977 -6.402 23.572 5.742 4.088 -0.375 C24 C8P 28
C8P O24 O24 O 0 1 N N N N N N 1.204 -7.449 22.970 5.965 3.262 0.770 O24 C8P 29
C8P O19 O19 O 0 1 N N N N N N 3.349 -4.887 22.380 3.802 5.147 0.601 O19 C8P 30
C8P C16 C16 C 0 1 N N S N N N 4.766 -5.526 17.473 -0.550 2.584 1.233 C16 C8P 31
C8P O16 O16 O 0 1 N N N N N N 4.778 -4.152 17.128 -1.087 3.532 2.158 O16 C8P 32
C8P C15 C15 C 0 1 N N R N N N 5.049 -6.377 16.211 -1.419 1.325 1.231 C15 C8P 33
C8P O15 O15 O 0 1 N N N N N N 6.290 -5.944 15.588 -0.881 0.377 0.306 O15 C8P 34
C8P C14 C14 C 0 1 N N N N N N 3.981 -6.201 15.123 -2.845 1.690 0.815 C14 C8P 35
C8P C13 C13 C 0 1 N N N N N N 4.245 -6.951 13.799 -3.742 0.456 0.932 C13 C8P 36
C8P C12 C12 C 0 1 N N N N N N 4.398 -8.440 13.992 -5.169 0.821 0.517 C12 C8P 37
C8P C11 C11 C 0 1 N N N N N N 4.514 -9.292 12.716 -6.066 -0.413 0.634 C11 C8P 38
C8P C10 C10 C 0 1 N N N N N N 5.719 -8.934 11.828 -7.492 -0.047 0.219 C10 C8P 39
C8P C9 C9 C 0 1 N N N N N N 5.774 -9.984 10.713 -8.389 -1.281 0.336 C9 C8P 40
C8P C8 C8 C 0 1 N N N N N N 6.633 -9.274 9.664 -9.816 -0.916 -0.079 C8 C8P 41
C8P C7 C7 C 0 1 N N N N N N 7.200 -10.203 8.635 -10.713 -2.150 0.038 C7 C8P 42
C8P C6 C6 C 0 1 N N N N N N 8.195 -9.384 7.805 -12.139 -1.785 -0.377 C6 C8P 43
C8P C5 C5 C 0 1 N N N N N N 7.590 -8.948 6.481 -13.036 -3.019 -0.260 C5 C8P 44
C8P C4 C4 C 0 1 N N N N N N 8.517 -8.721 5.260 -14.463 -2.653 -0.675 C4 C8P 45
C8P C3 C3 C 0 1 N N N N N N 8.819 -7.198 5.149 -15.360 -3.887 -0.558 C3 C8P 46
C8P C2 C2 C 0 1 N N N N N N 8.952 -6.811 3.705 -16.787 -3.522 -0.974 C2 C8P 47
C8P C1 C1 C 0 1 N N N N N N 9.051 -5.299 3.612 -17.684 -4.756 -0.857 C1 C8P 48
C8P H26 H26 H 0 1 N N N N N N 3.119 -9.639 18.782 2.312 -1.039 -0.496 H26 C8P 49
C8P H26A H26A H 0 0 N N N N N N 1.985 -9.173 20.103 3.512 0.220 -0.875 H26A C8P 50
C8P H27 H27 H 0 1 N N N N N N 0.855 -10.902 18.885 4.950 -0.593 0.974 H27 C8P 51
C8P H27A H27A H 0 0 N N N N N N 0.091 -9.425 18.350 3.750 -1.852 1.354 H27A C8P 52
C8P H28 H28 H 0 1 N N N N N N 1.666 -9.267 16.383 4.030 -2.804 -0.919 H28 C8P 53
C8P H28A H28A H 0 0 N N N N N N 2.590 -10.678 16.988 5.230 -1.545 -1.298 H28A C8P 54
C8P H29 H29 H 0 1 N N N N N N 0.544 -12.144 16.724 6.667 -2.358 0.552 H29 C8P 55
C8P H29A H29A H 0 0 N N N N N N -0.389 -10.705 16.122 5.467 -3.616 0.931 H29A C8P 56
C8P H30 H30 H 0 1 N N N N N N 1.409 -10.564 14.221 5.747 -4.568 -1.341 H30 C8P 57
C8P H30A H30A H 0 0 N N N N N N 1.904 -12.206 14.706 6.947 -3.310 -1.721 H30A C8P 58
C8P H31 H31 H 0 1 N N N N N N -0.450 -13.034 14.386 8.384 -4.122 0.129 H31 C8P 59
C8P H31A H31A H 0 0 N N N N N N -0.976 -11.356 13.950 7.185 -5.381 0.508 H31A C8P 60
C8P H32 H32 H 0 1 N N N N N N 0.677 -11.436 12.044 7.464 -6.333 -1.764 H32 C8P 61
C8P H32A H32A H 0 0 N N N N N N 0.857 -13.237 12.440 8.664 -5.075 -2.144 H32A C8P 62
C8P HJ2 HJ2 H 0 1 N N N N N N -2.201 -11.065 12.114 7.986 -8.116 -0.201 HJ2 C8P 63
C8P HK2 HK2 H 0 1 N N N N N N -4.054 -11.645 10.589 9.752 -9.490 0.827 HK2 C8P 64
C8P HL HL H 0 1 N N N N N N -3.872 -13.641 9.124 12.073 -8.669 0.886 HL C8P 65
C8P HK1 HK1 H 0 1 N N N N N N -1.841 -15.064 9.224 12.628 -6.475 -0.084 HK1 C8P 66
C8P HJ1 HJ1 H 0 1 N N N N N N 0.033 -14.388 10.690 10.863 -5.105 -1.120 HJ1 C8P 67
C8P HN HN H 0 1 N N N N N N 4.134 -7.569 18.875 1.152 1.382 -0.283 HN C8P 68
C8P H17 H17 H 0 1 N N N N N N 2.638 -5.371 17.435 0.854 1.696 2.605 H17 C8P 69
C8P H18 H18 H 0 1 N N N N N N 3.374 -3.794 19.208 1.312 4.104 2.596 H18 C8P 70
C8P H18A H18A H 0 0 N N N N N N 2.403 -5.124 19.972 2.745 3.230 2.003 H18A C8P 71
C8P H19 H19 H 0 1 N N N N N N 4.544 -3.412 21.495 2.145 6.021 1.473 H19 C8P 72
C8P H20 H20 H 0 1 N N N N N N 5.669 -4.517 23.382 2.618 7.218 -0.631 H20 C8P 73
C8P HO20 HO20 H 0 0 N N N N N N 6.583 -4.720 20.697 0.334 7.016 0.045 HO20 C8P 74
C8P H21 H21 H 0 1 N N N N N N 5.698 -6.999 21.580 1.924 4.563 -1.974 H21 C8P 75
C8P HO21 HO21 H 0 0 N N N N N N 7.559 -6.980 22.816 1.343 6.530 -3.202 HO21 C8P 76
C8P H22 H22 H 0 1 N N N N N N 4.229 -8.006 23.337 4.291 4.546 -2.664 H22 C8P 77
C8P HO22 HO22 H 0 0 N N N N N N 4.687 -7.183 25.266 4.637 6.909 -2.581 HO22 C8P 78
C8P H23 H23 H 0 1 N N N N N N 3.093 -6.818 21.732 3.698 3.431 -0.545 H23 C8P 79
C8P H24 H24 H 0 1 N N N N N N 2.261 -6.660 24.603 6.100 3.575 -1.268 H24 C8P 80
C8P H24A H24A H 0 0 N N N N N N 1.415 -5.459 23.645 6.281 5.028 -0.255 H24A C8P 81
C8P HO24 HO24 H 0 0 N N N N N N 1.033 -7.234 22.061 6.894 3.040 0.920 HO24 C8P 82
C8P H16 H16 H 0 1 N N N N N N 5.548 -5.873 18.164 -0.537 3.019 0.234 H16 C8P 83
C8P HO16 HO16 H 0 0 N N N N N N 4.781 -3.626 17.919 -1.059 3.241 3.080 HO16 C8P 84
C8P H15 H15 H 0 1 N N N N N N 5.077 -7.420 16.560 -1.431 0.890 2.230 H15 C8P 85
C8P HO15 HO15 H 0 0 N N N N N N 6.159 -5.850 14.652 -0.840 0.698 -0.606 HO15 C8P 86
C8P H14 H14 H 0 1 N N N N N N 3.030 -6.575 15.530 -3.223 2.477 1.468 H14 C8P 87
C8P H14A H14A H 0 0 N N N N N N 3.978 -5.130 14.870 -2.844 2.042 -0.216 H14A C8P 88
C8P H13 H13 H 0 1 N N N N N N 3.394 -6.774 13.124 -3.364 -0.331 0.280 H13 C8P 89
C8P H13A H13A H 0 0 N N N N N N 5.189 -6.570 13.382 -3.743 0.104 1.964 H13A C8P 90
C8P H12 H12 H 0 1 N N N N N N 5.318 -8.599 14.573 -5.547 1.609 1.169 H12 C8P 91
C8P H12A H12A H 0 0 N N N N N N 3.470 -8.770 14.483 -5.168 1.173 -0.514 H12A C8P 92
C8P H11 H11 H 0 1 N N N N N N 4.617 -10.344 13.019 -5.688 -1.200 -0.018 H11 C8P 93
C8P H11A H11A H 0 0 N N N N N N 3.610 -9.100 12.120 -6.067 -0.765 1.666 H11A C8P 94
C8P H10 H10 H 0 1 N N N N N N 5.595 -7.928 11.401 -7.870 0.740 0.871 H10 C8P 95
C8P H10A H10A H 0 0 N N N N N N 6.651 -8.931 12.412 -7.492 0.305 -0.812 H10A C8P 96
C8P H9 H9 H 0 1 N N N N N N 6.228 -10.927 11.052 -8.011 -2.068 -0.316 H9 C8P 97
C8P H9A H9A H 0 1 N N N N N N 4.785 -10.292 10.343 -8.390 -1.633 1.368 H9A C8P 98
C8P H8 H8 H 0 1 N N N N N N 6.004 -8.533 9.149 -10.194 -0.129 0.573 H8 C8P 99
C8P H8A H8A H 0 1 N N N N N N 7.481 -8.813 10.192 -9.815 -0.564 -1.111 H8A C8P 100
C8P H7 H7 H 0 1 N N N N N N 7.709 -11.049 9.120 -10.335 -2.937 -0.614 H7 C8P 101
C8P H7A H7A H 0 1 N N N N N N 6.405 -10.621 7.999 -10.714 -2.502 1.069 H7A C8P 102
C8P H6 H6 H 0 1 N N N N N N 8.480 -8.488 8.376 -12.517 -0.997 0.275 H6 C8P 103
C8P H6A H6A H 0 1 N N N N N N 9.071 -10.015 7.594 -12.139 -1.433 -1.409 H6A C8P 104
C8P H5 H5 H 0 1 N N N N N N 6.883 -9.739 6.189 -12.658 -3.806 -0.913 H5 C8P 105
C8P H5A H5A H 0 1 N N N N N N 7.179 -7.950 6.692 -13.037 -3.371 0.771 H5A C8P 106
C8P H4 H4 H 0 1 N N N N N N 9.455 -9.279 5.395 -14.841 -1.866 -0.023 H4 C8P 107
C8P H4A H4A H 0 1 N N N N N N 8.026 -9.076 4.342 -14.462 -2.301 -1.707 H4A C8P 108
C8P H3 H3 H 0 1 N N N N N N 7.996 -6.629 5.605 -14.982 -4.674 -1.211 H3 C8P 109
C8P H3A H3A H 0 1 N N N N N N 9.760 -6.974 5.674 -15.361 -4.239 0.473 H3A C8P 110
C8P H2 H2 H 0 1 N N N N N N 9.857 -7.269 3.280 -17.165 -2.735 -0.321 H2 C8P 111
C8P H2A H2A H 0 1 N N N N N N 8.076 -7.164 3.141 -16.786 -3.170 -2.005 H2A C8P 112
C8P H1 H1 H 0 1 N N N N N N 9.075 -4.870 4.624 -18.700 -4.496 -1.152 H1 C8P 113
C8P H1A H1A H 0 1 N N N N N N 9.971 -5.024 3.076 -17.306 -5.543 -1.509 H1A C8P 114
C8P H1B H1B H 0 1 N N N N N N 8.178 -4.907 3.069 -17.684 -5.108 0.175 H1B C8P 115
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
C8P O25 C25 DOUB N N 1
C8P C25 C26 SING N N 2
C8P C25 N SING N N 3
C8P C26 C27 SING N N 4
C8P C27 C28 SING N N 5
C8P C28 C29 SING N N 6
C8P C29 C30 SING N N 7
C8P C30 C31 SING N N 8
C8P C31 C32 SING N N 9
C8P C32 CI SING N N 10
C8P CI CJ2 DOUB Y N 11
C8P CI CJ1 SING Y N 12
C8P CJ2 CK2 SING Y N 13
C8P CK2 CL DOUB Y N 14
C8P CL CK1 SING Y N 15
C8P CK1 CJ1 DOUB Y N 16
C8P N C17 SING N N 17
C8P C17 C18 SING N N 18
C8P C17 C16 SING N N 19
C8P C18 O18 SING N N 20
C8P O18 C19 SING N N 21
C8P C19 C20 SING N N 22
C8P C19 O19 SING N N 23
C8P C20 O20 SING N N 24
C8P C20 C21 SING N N 25
C8P C21 O21 SING N N 26
C8P C21 C22 SING N N 27
C8P C22 O22 SING N N 28
C8P C22 C23 SING N N 29
C8P C23 C24 SING N N 30
C8P C23 O19 SING N N 31
C8P C24 O24 SING N N 32
C8P C16 O16 SING N N 33
C8P C16 C15 SING N N 34
C8P C15 O15 SING N N 35
C8P C15 C14 SING N N 36
C8P C14 C13 SING N N 37
C8P C13 C12 SING N N 38
C8P C12 C11 SING N N 39
C8P C11 C10 SING N N 40
C8P C10 C9 SING N N 41
C8P C9 C8 SING N N 42
C8P C8 C7 SING N N 43
C8P C7 C6 SING N N 44
C8P C6 C5 SING N N 45
C8P C5 C4 SING N N 46
C8P C4 C3 SING N N 47
C8P C3 C2 SING N N 48
C8P C2 C1 SING N N 49
C8P C26 H26 SING N N 50
C8P C26 H26A SING N N 51
C8P C27 H27 SING N N 52
C8P C27 H27A SING N N 53
C8P C28 H28 SING N N 54
C8P C28 H28A SING N N 55
C8P C29 H29 SING N N 56
C8P C29 H29A SING N N 57
C8P C30 H30 SING N N 58
C8P C30 H30A SING N N 59
C8P C31 H31 SING N N 60
C8P C31 H31A SING N N 61
C8P C32 H32 SING N N 62
C8P C32 H32A SING N N 63
C8P CJ2 HJ2 SING N N 64
C8P CK2 HK2 SING N N 65
C8P CL HL SING N N 66
C8P CK1 HK1 SING N N 67
C8P CJ1 HJ1 SING N N 68
C8P N HN SING N N 69
C8P C17 H17 SING N N 70
C8P C18 H18 SING N N 71
C8P C18 H18A SING N N 72
C8P C19 H19 SING N N 73
C8P C20 H20 SING N N 74
C8P O20 HO20 SING N N 75
C8P C21 H21 SING N N 76
C8P O21 HO21 SING N N 77
C8P C22 H22 SING N N 78
C8P O22 HO22 SING N N 79
C8P C23 H23 SING N N 80
C8P C24 H24 SING N N 81
C8P C24 H24A SING N N 82
C8P O24 HO24 SING N N 83
C8P C16 H16 SING N N 84
C8P O16 HO16 SING N N 85
C8P C15 H15 SING N N 86
C8P O15 HO15 SING N N 87
C8P C14 H14 SING N N 88
C8P C14 H14A SING N N 89
C8P C13 H13 SING N N 90
C8P C13 H13A SING N N 91
C8P C12 H12 SING N N 92
C8P C12 H12A SING N N 93
C8P C11 H11 SING N N 94
C8P C11 H11A SING N N 95
C8P C10 H10 SING N N 96
C8P C10 H10A SING N N 97
C8P C9 H9 SING N N 98
C8P C9 H9A SING N N 99
C8P C8 H8 SING N N 100
C8P C8 H8A SING N N 101
C8P C7 H7 SING N N 102
C8P C7 H7A SING N N 103
C8P C6 H6 SING N N 104
C8P C6 H6A SING N N 105
C8P C5 H5 SING N N 106
C8P C5 H5A SING N N 107
C8P C4 H4 SING N N 108
C8P C4 H4A SING N N 109
C8P C3 H3 SING N N 110
C8P C3 H3A SING N N 111
C8P C2 H2 SING N N 112
C8P C2 H2A SING N N 113
C8P C1 H1 SING N N 114
C8P C1 H1A SING N N 115
C8P C1 H1B SING N N 116
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
C8P SMILES ACDLabs 10.04 O=C(NC(COC1OC(C(O)C(O)C1O)CO)C(O)C(O)CCCCCCCCCCCCCC)CCCCCCCc2ccccc2
C8P SMILES_CANONICAL CACTVS 3.341 CCCCCCCCCCCCCC[C@@H](O)[C@@H](O)[C@H](CO[C@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O)NC(=O)CCCCCCCc2ccccc2
C8P SMILES CACTVS 3.341 CCCCCCCCCCCCCC[CH](O)[CH](O)[CH](CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)NC(=O)CCCCCCCc2ccccc2
C8P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCCCC[C@H]([C@H]([C@H](CO[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)NC(=O)CCCCCCCc2ccccc2)O)O
C8P SMILES "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCCCCC(C(C(COC1C(C(C(C(O1)CO)O)O)O)NC(=O)CCCCCCCc2ccccc2)O)O
C8P InChI InChI 1.03 InChI=1S/C38H67NO9/c1-2-3-4-5-6-7-8-9-10-11-14-20-25-31(41)34(43)30(28-47-38-37(46)36(45)35(44)32(27-40)48-38)39-33(42)26-21-15-12-13-17-22-29-23-18-16-19-24-29/h16,18-19,23-24,30-32,34-38,40-41,43-46H,2-15,17,20-22,25-28H2,1H3,(H,39,42)/t30-,31+,32+,34-,35-,36-,37+,38-/m0/s1
C8P InChIKey InChI 1.03 YEKLGTQAMSELFI-ZORUMLJWSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
C8P "SYSTEMATIC NAME" ACDLabs 10.04 N-{(1S,2S,3R)-1-[(alpha-D-galactopyranosyloxy)methyl]-2,3-dihydroxyheptadecyl}-8-phenyloctanamide
C8P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 N-[(2S,3S,4R)-3,4-dihydroxy-1-[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-octadecan-2-yl]-8-phenyl-octanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
C8P 'Create component' 2009-04-07 RCSB
C8P 'Modify aromatic_flag' 2011-06-04 RCSB
C8P 'Modify descriptor' 2011-06-04 RCSB
C8P 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id C8P
_pdbx_chem_comp_synonyms.name (2S,3S,4R)-N-PHENYLOCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id C8P
_pdbe_chem_comp_synonyms.name '(2S,3S,4R)-N-PHENYLOCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
C8P O25 O 15.990 -3.893 1
C8P C25 C 15.990 -5.393 2
C8P C26 C 17.290 -6.143 3
C8P C27 C 18.588 -5.393 4
C8P C28 C 19.887 -6.143 5
C8P C29 C 21.187 -5.393 6
C8P C30 C 22.486 -6.143 7
C8P C31 C 23.785 -5.393 8
C8P C32 C 25.084 -6.143 9
C8P CI C 26.383 -5.393 10
C8P CJ2 C 27.682 -6.143 11
C8P CK2 C 28.981 -5.393 12
C8P CL C 28.981 -3.893 13
C8P CK1 C 27.682 -3.143 14
C8P CJ1 C 26.383 -3.893 15
C8P N N 14.691 -6.143 16
C8P C17 C 13.392 -5.393 17
C8P C18 C 12.093 -6.143 18
C8P O18 O 12.093 -7.643 19
C8P C19 C 10.794 -8.393 20
C8P C20 C 10.794 -9.893 21
C8P O20 O 12.093 -10.643 22
C8P C21 C 9.495 -10.643 23
C8P O21 O 9.495 -12.143 24
C8P C22 C 8.196 -9.893 25
C8P O22 O 6.897 -10.643 26
C8P C23 C 8.196 -8.393 27
C8P C24 C 6.897 -7.643 28
C8P O24 O 6.897 -6.143 29
C8P O19 O 9.495 -7.643 30
C8P C16 C 13.392 -3.893 31
C8P O16 O 14.691 -3.143 32
C8P C15 C 12.093 -3.143 33
C8P O15 O 10.794 -3.893 34
C8P C14 C 12.093 -1.643 35
C8P C13 C 10.794 -0.892 36
C8P C12 C 10.794 0.608 37
C8P C11 C 9.495 1.357 38
C8P C10 C 9.495 2.857 39
C8P C9 C 8.196 3.607 40
C8P C8 C 8.196 5.107 41
C8P C7 C 6.897 5.857 42
C8P C6 C 6.897 7.357 43
C8P C5 C 5.598 8.107 44
C8P C4 C 5.598 9.607 45
C8P C3 C 4.299 10.357 46
C8P C2 C 4.299 11.857 47
C8P C1 C 3.000 12.607 48
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
C8P O25 C25 DOUBLE NONE 1
C8P C25 C26 SINGLE NONE 2
C8P C25 N SINGLE NONE 3
C8P C26 C27 SINGLE NONE 4
C8P C27 C28 SINGLE NONE 5
C8P C28 C29 SINGLE NONE 6
C8P C29 C30 SINGLE NONE 7
C8P C30 C31 SINGLE NONE 8
C8P C31 C32 SINGLE NONE 9
C8P C32 CI SINGLE NONE 10
C8P CI CJ2 DOUBLE NONE 11
C8P CI CJ1 SINGLE NONE 12
C8P CJ2 CK2 SINGLE NONE 13
C8P CK2 CL DOUBLE NONE 14
C8P CL CK1 SINGLE NONE 15
C8P CK1 CJ1 DOUBLE NONE 16
C8P N C17 SINGLE NONE 17
C8P C17 C18 SINGLE BEGINWEDGE 18
C8P C17 C16 SINGLE NONE 19
C8P C18 O18 SINGLE NONE 20
C8P C19 O18 SINGLE BEGINDASH 21
C8P C19 C20 SINGLE NONE 22
C8P C19 O19 SINGLE NONE 23
C8P C20 O20 SINGLE BEGINDASH 24
C8P C20 C21 SINGLE NONE 25
C8P C21 O21 SINGLE BEGINWEDGE 26
C8P C21 C22 SINGLE NONE 27
C8P C22 O22 SINGLE BEGINWEDGE 28
C8P C22 C23 SINGLE NONE 29
C8P C23 C24 SINGLE BEGINWEDGE 30
C8P C23 O19 SINGLE NONE 31
C8P C24 O24 SINGLE NONE 32
C8P C16 O16 SINGLE BEGINWEDGE 33
C8P C16 C15 SINGLE NONE 34
C8P C15 O15 SINGLE BEGINDASH 35
C8P C15 C14 SINGLE NONE 36
C8P C14 C13 SINGLE NONE 37
C8P C13 C12 SINGLE NONE 38
C8P C12 C11 SINGLE NONE 39
C8P C11 C10 SINGLE NONE 40
C8P C10 C9 SINGLE NONE 41
C8P C9 C8 SINGLE NONE 42
C8P C8 C7 SINGLE NONE 43
C8P C7 C6 SINGLE NONE 44
C8P C6 C5 SINGLE NONE 45
C8P C5 C4 SINGLE NONE 46
C8P C4 C3 SINGLE NONE 47
C8P C3 C2 SINGLE NONE 48
C8P C2 C1 SINGLE NONE 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
C8P MurckoScaffold S1 scaffold 'O=C(CCCCCCCc1ccccc1)NCCO[C@@H]1CCCCO1' InChI=1S/C21H33NO3/c23-20(22-16-18-25-21-15-9-10-17-24-21)14-8-3-1-2-5-11-19-12-6-4-7-13-19/h4,6-7,12-13,21H,1-3,5,8-11,14-18H2,(H,22,23)/t21-/m1/s1 HRYUGVYJNWLVPH-OAQYLSRUSA-N
C8P amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
C8P phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
C8P pyranose F3 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
C8P O25 S1 1
C8P C25 S1 1
C8P C26 S1 1
C8P C27 S1 1
C8P C28 S1 1
C8P C29 S1 1
C8P C30 S1 1
C8P C31 S1 1
C8P C32 S1 1
C8P CI S1 1
C8P CJ2 S1 1
C8P CK2 S1 1
C8P CL S1 1
C8P CK1 S1 1
C8P CJ1 S1 1
C8P N S1 1
C8P C17 S1 1
C8P C18 S1 1
C8P O18 S1 1
C8P C19 S1 1
C8P C20 S1 1
C8P C21 S1 1
C8P C22 S1 1
C8P C23 S1 1
C8P O19 S1 1
C8P N F1 1
C8P C25 F1 1
C8P O25 F1 1
C8P C26 F1 1
C8P CI F2 1
C8P CJ2 F2 1
C8P CK2 F2 1
C8P CL F2 1
C8P CK1 F2 1
C8P CJ1 F2 1
C8P C22 F3 1
C8P C23 F3 1
C8P O19 F3 1
C8P C19 F3 1
C8P C20 F3 1
C8P C21 F3 1
C8P O18 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id C8P
_pdbe_chem_comp_rdkit_properties.exactmw 681.482
_pdbe_chem_comp_rdkit_properties.amw 681.952
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 35
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 48
_pdbe_chem_comp_rdkit_properties.NumAtoms 115
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.816
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 8
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 383.519
_pdbe_chem_comp_rdkit_properties.tpsa 168.940
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.629
_pdbe_chem_comp_rdkit_properties.CrippenMR 186.940
_pdbe_chem_comp_rdkit_properties.chi0v 23.121
_pdbe_chem_comp_rdkit_properties.chi1v 11.693
_pdbe_chem_comp_rdkit_properties.chi2v 3.937
_pdbe_chem_comp_rdkit_properties.chi3v 3.937
_pdbe_chem_comp_rdkit_properties.chi4v 2.112
_pdbe_chem_comp_rdkit_properties.chi0n 90.121
_pdbe_chem_comp_rdkit_properties.chi1n 44.589
_pdbe_chem_comp_rdkit_properties.chi2n 3.937
_pdbe_chem_comp_rdkit_properties.chi3n 3.937
_pdbe_chem_comp_rdkit_properties.chi4n 2.112
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.630
_pdbe_chem_comp_rdkit_properties.kappa1 7.297
_pdbe_chem_comp_rdkit_properties.kappa2 26.216
_pdbe_chem_comp_rdkit_properties.kappa3 17.343
_pdbe_chem_comp_rdkit_properties.Phi 3.985
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
C8P UniChem ChEMBL CHEMBL260403
C8P UniChem PDBe C8P
C8P UniChem ChEBI 528968
C8P UniChem ZINC ZINC000049952316
C8P UniChem 'PubChem TPHARMA' 16753826
C8P UniChem Nikkaji J2.637.893A
C8P UniChem MetaboLights MTBLC528968
C8P UniChem PubChem 11650502
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
C8P O25 -2.959 -0.867 3.279 ETKDGv3 1
C8P C25 -3.438 -0.226 2.305 ETKDGv3 2
C8P C26 -4.474 0.827 2.552 ETKDGv3 3
C8P C27 -5.881 0.253 2.338 ETKDGv3 4
C8P C28 -6.983 1.318 2.518 ETKDGv3 5
C8P C29 -7.574 1.827 1.190 ETKDGv3 6
C8P C30 -6.591 2.606 0.296 ETKDGv3 7
C8P C31 -6.067 3.924 0.903 ETKDGv3 8
C8P C32 -7.148 4.995 1.128 ETKDGv3 9
C8P CI -7.807 5.424 -0.158 ETKDGv3 10
C8P CJ2 -7.166 6.235 -1.019 ETKDGv3 11
C8P CK2 -7.809 6.628 -2.291 ETKDGv3 12
C8P CL -9.030 6.173 -2.594 ETKDGv3 13
C8P CK1 -9.739 5.278 -1.657 ETKDGv3 14
C8P CJ1 -9.162 4.922 -0.503 ETKDGv3 15
C8P N -3.031 -0.525 0.962 ETKDGv3 16
C8P C17 -2.075 -1.588 0.636 ETKDGv3 17
C8P C18 -2.865 -2.828 0.183 ETKDGv3 18
C8P O18 -2.019 -3.961 0.178 ETKDGv3 19
C8P C19 -2.636 -5.040 -0.504 ETKDGv3 20
C8P C20 -1.962 -6.388 -0.100 ETKDGv3 21
C8P O20 -0.655 -6.155 0.367 ETKDGv3 22
C8P C21 -1.914 -7.362 -1.298 ETKDGv3 23
C8P O21 -3.201 -7.867 -1.571 ETKDGv3 24
C8P C22 -1.270 -6.701 -2.552 ETKDGv3 25
C8P O22 -1.861 -7.203 -3.725 ETKDGv3 26
C8P C23 -1.390 -5.154 -2.487 ETKDGv3 27
C8P C24 -1.262 -4.474 -3.859 ETKDGv3 28
C8P O24 0.007 -4.705 -4.411 ETKDGv3 29
C8P O19 -2.630 -4.798 -1.910 ETKDGv3 30
C8P C16 -1.082 -1.099 -0.459 ETKDGv3 31
C8P O16 -0.267 -2.162 -0.892 ETKDGv3 32
C8P C15 -0.198 0.087 0.027 ETKDGv3 33
C8P O15 -0.986 1.204 0.358 ETKDGv3 34
C8P C14 0.862 0.475 -1.032 ETKDGv3 35
C8P C13 1.714 1.698 -0.639 ETKDGv3 36
C8P C12 2.518 1.538 0.666 ETKDGv3 37
C8P C11 3.473 0.329 0.701 ETKDGv3 38
C8P C10 4.522 0.297 -0.428 ETKDGv3 39
C8P C9 5.444 1.531 -0.494 ETKDGv3 40
C8P C8 6.245 1.815 0.792 ETKDGv3 41
C8P C7 7.149 0.659 1.264 ETKDGv3 42
C8P C6 8.194 0.188 0.233 ETKDGv3 43
C8P C5 9.164 1.281 -0.256 ETKDGv3 44
C8P C4 9.980 1.971 0.855 ETKDGv3 45
C8P C3 10.832 1.024 1.724 ETKDGv3 46
C8P C2 11.850 0.172 0.946 ETKDGv3 47
C8P C1 12.898 1.014 0.219 ETKDGv3 48
C8P H26 -4.379 1.206 3.593 ETKDGv3 49
C8P H26A -4.288 1.676 1.864 ETKDGv3 50
C8P H27 -5.953 -0.221 1.334 ETKDGv3 51
C8P H27A -6.041 -0.553 3.088 ETKDGv3 52
C8P H28 -6.636 2.166 3.146 ETKDGv3 53
C8P H28A -7.819 0.850 3.083 ETKDGv3 54
C8P H29 -8.461 2.456 1.409 ETKDGv3 55
C8P H29A -7.954 0.955 0.613 ETKDGv3 56
C8P H30 -7.093 2.826 -0.671 ETKDGv3 57
C8P H30A -5.728 1.956 0.044 ETKDGv3 58
C8P H31 -5.292 4.337 0.220 ETKDGv3 59
C8P H31A -5.555 3.725 1.866 ETKDGv3 60
C8P H32 -6.671 5.882 1.601 ETKDGv3 61
C8P H32A -7.905 4.633 1.854 ETKDGv3 62
C8P HJ2 -6.174 6.606 -0.795 ETKDGv3 63
C8P HK2 -7.288 7.283 -2.977 ETKDGv3 64
C8P HL -9.501 6.459 -3.526 ETKDGv3 65
C8P HK1 -10.726 4.911 -1.907 ETKDGv3 66
C8P HJ1 -9.689 4.266 0.178 ETKDGv3 67
C8P HN -3.534 -0.052 0.176 ETKDGv3 68
C8P H17 -1.488 -1.860 1.541 ETKDGv3 69
C8P H18 -3.697 -3.002 0.902 ETKDGv3 70
C8P H18A -3.303 -2.624 -0.822 ETKDGv3 71
C8P H19 -3.705 -5.132 -0.195 ETKDGv3 72
C8P H20 -2.561 -6.850 0.721 ETKDGv3 73
C8P HO20 -0.383 -6.959 0.882 ETKDGv3 74
C8P H21 -1.286 -8.234 -1.012 ETKDGv3 75
C8P HO21 -3.767 -7.117 -1.889 ETKDGv3 76
C8P H22 -0.180 -6.942 -2.562 ETKDGv3 77
C8P HO22 -1.521 -8.128 -3.843 ETKDGv3 78
C8P H23 -0.549 -4.754 -1.871 ETKDGv3 79
C8P H24 -1.384 -3.378 -3.722 ETKDGv3 80
C8P H24A -2.070 -4.807 -4.550 ETKDGv3 81
C8P HO24 -0.050 -5.558 -4.916 ETKDGv3 82
C8P H16 -1.672 -0.758 -1.339 ETKDGv3 83
C8P HO16 0.275 -2.459 -0.114 ETKDGv3 84
C8P H15 0.330 -0.244 0.946 ETKDGv3 85
C8P HO15 -1.451 1.498 -0.469 ETKDGv3 86
C8P H14 0.346 0.710 -1.988 ETKDGv3 87
C8P H14A 1.531 -0.387 -1.238 ETKDGv3 88
C8P H13 1.050 2.583 -0.536 ETKDGv3 89
C8P H13A 2.409 1.930 -1.474 ETKDGv3 90
C8P H12 1.815 1.459 1.522 ETKDGv3 91
C8P H12A 3.097 2.469 0.841 ETKDGv3 92
C8P H11 3.990 0.313 1.684 ETKDGv3 93
C8P H11A 2.880 -0.609 0.660 ETKDGv3 94
C8P H10 4.007 0.189 -1.406 ETKDGv3 95
C8P H10A 5.140 -0.618 -0.312 ETKDGv3 96
C8P H9 4.839 2.429 -0.739 ETKDGv3 97
C8P H9A 6.147 1.402 -1.344 ETKDGv3 98
C8P H8 5.543 2.072 1.613 ETKDGv3 99
C8P H8A 6.863 2.723 0.631 ETKDGv3 100
C8P H7 7.667 0.972 2.195 ETKDGv3 101
C8P H7A 6.518 -0.209 1.549 ETKDGv3 102
C8P H6 7.674 -0.243 -0.648 ETKDGv3 103
C8P H6A 8.776 -0.648 0.676 ETKDGv3 104
C8P H5 8.595 2.057 -0.810 ETKDGv3 105
C8P H5A 9.859 0.834 -0.998 ETKDGv3 106
C8P H4 9.292 2.537 1.519 ETKDGv3 107
C8P H4A 10.641 2.732 0.388 ETKDGv3 108
C8P H3 11.378 1.635 2.475 ETKDGv3 109
C8P H3A 10.164 0.348 2.299 ETKDGv3 110
C8P H2 11.334 -0.493 0.223 ETKDGv3 111
C8P H2A 12.376 -0.485 1.672 ETKDGv3 112
C8P H1 13.380 1.727 0.921 ETKDGv3 113
C8P H1A 12.437 1.573 -0.621 ETKDGv3 114
C8P H1B 13.680 0.347 -0.201 ETKDGv3 115
#