data_CG2
#
_chem_comp.id CG2
_chem_comp.name "CYTIDYL-2'-5'-PHOSPHO-GUANOSINE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H25 N8 O12 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-06-28
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 588.422
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CG2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CG2 N1G N1G N 0 1 N N N N N N 9.333 44.292 -1.379 8.409 -1.186 1.125 N1G CG2 1
CG2 C2G C2G C 0 1 N N N N N N 8.009 43.565 -1.398 8.092 0.138 1.059 C2G CG2 2
CG2 N2G N2G N 0 1 N N N N N N 7.895 42.487 -2.180 9.062 1.070 1.331 N2G CG2 3
CG2 N3G N3G N 0 1 N N N N N N 6.992 43.977 -0.669 6.886 0.548 0.736 N3G CG2 4
CG2 C4G C4G C 0 1 Y N N N N N 7.281 45.110 0.075 5.909 -0.324 0.462 C4G CG2 5
CG2 C5G C5G C 0 1 Y N N N N N 8.467 45.851 0.155 6.170 -1.698 0.518 C5G CG2 6
CG2 C6G C6G C 0 1 N N N N N N 9.583 45.450 -0.600 7.473 -2.125 0.867 C6G CG2 7
CG2 O6G O6G O 0 1 N N N N N N 10.675 45.985 -0.634 7.745 -3.312 0.929 O6G CG2 8
CG2 N7G N7G N 0 1 Y N N N N N 8.321 46.920 1.024 5.020 -2.339 0.200 N7G CG2 9
CG2 C8G C8G C 0 1 Y N N N N N 7.092 46.821 1.454 4.091 -1.462 -0.043 C8G CG2 10
CG2 N9G N9G N 0 1 Y N N N N N 6.405 45.746 0.920 4.593 -0.202 0.106 N9G CG2 11
CG2 "CA'" CA* C 0 1 N N R N N N 5.012 45.307 1.167 3.858 1.052 -0.080 "CA'" CG2 12
CG2 "CB'" CB* C 0 1 N N R N N N 4.858 44.242 2.270 4.039 1.572 -1.523 "CB'" CG2 13
CG2 "OB'" OB* O 0 1 N N N N N N 3.895 43.275 1.861 5.050 2.580 -1.576 "OB'" CG2 14
CG2 "CC'" CC* C 0 1 N N S N N N 4.436 45.094 3.446 2.658 2.170 -1.880 "CC'" CG2 15
CG2 "OC'" OC* O 0 1 N N N N N N 3.818 44.362 4.488 2.774 3.566 -2.161 "OC'" CG2 16
CG2 "CD'" CD* C 0 1 N N R N N N 3.501 46.093 2.799 1.810 1.943 -0.609 "CD'" CG2 17
CG2 "OD'" OD* O 0 1 N N N N N N 4.180 46.413 1.540 2.439 0.827 0.060 "OD'" CG2 18
CG2 "CE'" CE* C 0 1 N N N N N N 3.291 47.345 3.618 0.368 1.596 -0.983 "CE'" CG2 19
CG2 "OE'" OE* O 0 1 N N N N N N 4.514 48.104 3.714 -0.407 1.433 0.207 "OE'" CG2 20
CG2 P P P 0 1 N N R N N N 4.580 49.448 4.584 -1.905 1.071 -0.259 P CG2 21
CG2 O1P O1P O 0 1 N N N N N N 4.036 49.175 5.968 -2.398 2.113 -1.187 O1P CG2 22
CG2 O2P O2P O 0 1 N N N N N N 6.008 49.932 4.447 -1.905 -0.355 -1.005 O2P CG2 23
CG2 "O5'" O5* O 0 1 N N N N N N 3.588 54.934 -0.202 -8.829 1.076 1.044 "O5'" CG2 24
CG2 "C5'" C5* C 0 1 N N N N N N 4.542 54.198 0.638 -7.617 1.705 0.622 "C5'" CG2 25
CG2 "C4'" C4* C 0 1 N N R N N N 3.810 53.234 1.575 -6.443 1.139 1.423 "C4'" CG2 26
CG2 "O4'" O4* O 0 1 N N N N N N 3.040 52.236 0.824 -6.235 -0.242 1.082 "O4'" CG2 27
CG2 "C3'" C3* C 0 1 N N R N N N 4.752 52.439 2.472 -5.150 1.898 1.066 "C3'" CG2 28
CG2 "O3'" O3* O 0 1 N N N N N N 4.933 53.143 3.720 -4.601 2.530 2.224 "O3'" CG2 29
CG2 "C2'" C2* C 0 1 N N R N N N 4.085 51.051 2.615 -4.195 0.797 0.545 "C2'" CG2 30
CG2 "O2'" O2* O 0 1 N N N N N N 3.665 50.557 3.856 -2.866 1.003 1.031 "O2'" CG2 31
CG2 "C1'" C1* C 0 1 N N R N N N 2.996 51.015 1.540 -4.814 -0.487 1.155 "C1'" CG2 32
CG2 N1U N1U N 0 1 N N N N N N 3.147 49.883 0.584 -4.451 -1.666 0.365 N1U CG2 33
CG2 C2U C2U C 0 1 N N N N N N 2.056 48.899 0.408 -4.823 -1.746 -0.926 C2U CG2 34
CG2 O2U O2U O 0 1 N N N N N N 0.998 48.964 1.032 -5.455 -0.831 -1.427 O2U CG2 35
CG2 N3U N3U N 0 1 N N N N N N 2.274 47.791 -0.567 -4.502 -2.804 -1.669 N3U CG2 36
CG2 C4U C4U C 0 1 N N N N N N 3.397 47.678 -1.263 -3.815 -3.813 -1.149 C4U CG2 37
CG2 C5U C5U C 0 1 N N N N N N 4.475 48.569 -1.149 -3.416 -3.762 0.202 C5U CG2 38
CG2 C6U C6U C 0 1 N N N N N N 4.388 49.643 -0.273 -3.745 -2.678 0.943 C6U CG2 39
CG2 N4C N4C N 0 1 N N N N N N 3.468 46.590 -2.140 -3.494 -4.903 -1.925 N4C CG2 40
CG2 HNG1 1HNG H 0 0 N N N N N N 10.124 43.974 -1.938 9.309 -1.455 1.366 HNG1 CG2 41
CG2 H2G1 1H2G H 0 0 N N N N N N 8.669 42.185 -2.727 8.853 2.016 1.284 H2G1 CG2 42
CG2 H2G2 2H2G H 0 0 N N N N N N 7.036 41.986 -2.215 9.956 0.783 1.575 H2G2 CG2 43
CG2 H8G H8G H 0 1 N N N N N N 6.662 47.500 2.147 3.073 -1.696 -0.321 H8G CG2 44
CG2 "HC'" "HC'" H 0 1 N N N N N N 4.704 44.861 0.210 4.197 1.799 0.638 "HC'" CG2 45
CG2 HCA HCA H 0 1 N N N N N N 5.749 43.642 2.505 4.285 0.750 -2.196 HCA CG2 46
CG2 "HO'" "HO'" H 0 1 N N N N N N 2.984 43.632 2.012 5.072 2.906 -2.486 "HO'" CG2 47
CG2 HCB HCB H 0 1 N N N N N N 5.290 45.557 3.962 2.221 1.645 -2.729 HCB CG2 48
CG2 HOA HOA H 0 1 N N N N N N 2.834 44.425 4.398 3.311 3.646 -2.962 HOA CG2 49
CG2 HCC HCC H 0 1 N N N N N N 2.490 45.677 2.680 1.834 2.828 0.027 HCC CG2 50
CG2 "HC'1" "1HC'" H 0 0 N N N N N N 2.519 47.964 3.139 -0.055 2.400 -1.585 "HC'1" CG2 51
CG2 "HC'2" "2HC'" H 0 0 N N N N N N 2.975 47.055 4.631 0.354 0.668 -1.555 "HC'2" CG2 52
CG2 H2P H2P H 0 1 N N N N N N 6.617 49.153 4.389 -1.578 -1.004 -0.367 H2P CG2 53
CG2 HOB HOB H 0 1 N N N N N N 3.022 54.292 -0.700 -9.542 1.460 0.516 HOB CG2 54
CG2 HCA1 1HCA H 0 0 N N N N N N 5.224 53.625 -0.008 -7.688 2.780 0.792 HCA1 CG2 55
CG2 HCA2 2HCA H 0 0 N N N N N N 5.107 54.920 1.246 -7.459 1.514 -0.439 HCA2 CG2 56
CG2 HCD HCD H 0 1 N N N N N N 3.162 53.883 2.182 -6.643 1.231 2.490 HCD CG2 57
CG2 HCE HCE H 0 1 N N N N N N 5.767 52.317 2.067 -5.344 2.635 0.286 HCE CG2 58
CG2 HOC HOC H 0 1 N N N N N N 4.049 53.361 4.107 -5.237 3.203 2.503 HOC CG2 59
CG2 HCG HCG H 0 1 N N N N N N 4.898 50.321 2.487 -4.207 0.754 -0.544 HCG CG2 60
CG2 HCF HCF H 0 1 N N N N N N 2.031 50.871 2.049 -4.499 -0.609 2.192 HCF CG2 61
CG2 H5U H5U H 0 1 N N N N N N 5.352 48.423 -1.729 -2.856 -4.576 0.639 H5U CG2 62
CG2 H6U H6U H 0 1 N N N N N N 5.206 50.315 -0.197 -3.450 -2.615 1.980 H6U CG2 63
CG2 H4C1 1H4C H 0 0 N N N N N N 2.703 45.958 -2.212 -2.991 -5.639 -1.543 H4C1 CG2 64
CG2 H4C2 2H4C H 0 0 N N N N N N 4.284 46.448 -2.692 -3.770 -4.935 -2.854 H4C2 CG2 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CG2 N1G C2G SING N N 1
CG2 N1G C6G SING N N 2
CG2 N1G HNG1 SING N N 3
CG2 C2G N2G SING N N 4
CG2 C2G N3G DOUB N N 5
CG2 N2G H2G1 SING N N 6
CG2 N2G H2G2 SING N N 7
CG2 N3G C4G SING N N 8
CG2 C4G C5G DOUB Y N 9
CG2 C4G N9G SING Y N 10
CG2 C5G C6G SING N N 11
CG2 C5G N7G SING Y N 12
CG2 C6G O6G DOUB N N 13
CG2 N7G C8G DOUB Y N 14
CG2 C8G N9G SING Y N 15
CG2 C8G H8G SING N N 16
CG2 N9G "CA'" SING N N 17
CG2 "CA'" "CB'" SING N N 18
CG2 "CA'" "OD'" SING N N 19
CG2 "CA'" "HC'" SING N N 20
CG2 "CB'" "OB'" SING N N 21
CG2 "CB'" "CC'" SING N N 22
CG2 "CB'" HCA SING N N 23
CG2 "OB'" "HO'" SING N N 24
CG2 "CC'" "OC'" SING N N 25
CG2 "CC'" "CD'" SING N N 26
CG2 "CC'" HCB SING N N 27
CG2 "OC'" HOA SING N N 28
CG2 "CD'" "OD'" SING N N 29
CG2 "CD'" "CE'" SING N N 30
CG2 "CD'" HCC SING N N 31
CG2 "CE'" "OE'" SING N N 32
CG2 "CE'" "HC'1" SING N N 33
CG2 "CE'" "HC'2" SING N N 34
CG2 "OE'" P SING N N 35
CG2 P O1P DOUB N N 36
CG2 P O2P SING N N 37
CG2 P "O2'" SING N N 38
CG2 O2P H2P SING N N 39
CG2 "O5'" "C5'" SING N N 40
CG2 "O5'" HOB SING N N 41
CG2 "C5'" "C4'" SING N N 42
CG2 "C5'" HCA1 SING N N 43
CG2 "C5'" HCA2 SING N N 44
CG2 "C4'" "O4'" SING N N 45
CG2 "C4'" "C3'" SING N N 46
CG2 "C4'" HCD SING N N 47
CG2 "O4'" "C1'" SING N N 48
CG2 "C3'" "O3'" SING N N 49
CG2 "C3'" "C2'" SING N N 50
CG2 "C3'" HCE SING N N 51
CG2 "O3'" HOC SING N N 52
CG2 "C2'" "O2'" SING N N 53
CG2 "C2'" "C1'" SING N N 54
CG2 "C2'" HCG SING N N 55
CG2 "C1'" N1U SING N N 56
CG2 "C1'" HCF SING N N 57
CG2 N1U C2U SING N N 58
CG2 N1U C6U SING N N 59
CG2 C2U O2U DOUB N N 60
CG2 C2U N3U SING N N 61
CG2 N3U C4U DOUB N N 62
CG2 C4U C5U SING N N 63
CG2 C4U N4C SING N N 64
CG2 C5U C6U DOUB N N 65
CG2 C5U H5U SING N N 66
CG2 C6U H6U SING N N 67
CG2 N4C H4C1 SING N N 68
CG2 N4C H4C2 SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CG2 SMILES ACDLabs 10.04 O=C1N=C(N)C=CN1C5OC(CO)C(O)C5OP(=O)(O)OCC4OC(n3cnc2c3N=C(N)NC2=O)C(O)C4O
CG2 SMILES_CANONICAL CACTVS 3.341 NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@](O)(=O)O[C@@H]4[C@H](O)[C@@H](CO)O[C@H]4N5C=CC(=NC5=O)N)[C@@H](O)[C@H]3O
CG2 SMILES CACTVS 3.341 NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[CH]4[CH](O)[CH](CO)O[CH]4N5C=CC(=NC5=O)N)[CH](O)[CH]3O
CG2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[C@@H]4[C@@H]([C@H](O[C@H]4N5C=CC(=NC5=O)N)CO)O)O)O)N=C(NC2=O)N
CG2 SMILES "OpenEye OEToolkits" 1.5.0 c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OC4C(C(OC4N5C=CC(=NC5=O)N)CO)O)O)O)N=C(NC2=O)N
CG2 InChI InChI 1.03 InChI=1S/C19H25N8O12P/c20-8-1-2-26(19(33)23-8)17-13(11(30)6(3-28)37-17)39-40(34,35)36-4-7-10(29)12(31)16(38-7)27-5-22-9-14(27)24-18(21)25-15(9)32/h1-2,5-7,10-13,16-17,28-31H,3-4H2,(H,34,35)(H2,20,23,33)(H3,21,24,25,32)/t6-,7-,10-,11-,12-,13-,16-,17-/m1/s1
CG2 InChIKey InChI 1.03 QZDUXDLOEVJGDG-VMIOUTBZSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CG2 "SYSTEMATIC NAME" ACDLabs 10.04 "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R,4R,5R)-2-(4-amino-2-oxopyrimidin-1(2H)-yl)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-3-yl hydrogen (R)-phosphate (non-preferred name)"
CG2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [(2R,3R,4R,5R)-2-(4-amino-2-oxo-pyrimidin-1-yl)-4-hydroxy-5-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CG2 'Create component' 2003-06-28 EBI
CG2 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id CG2
_pdbe_chem_comp_drugbank_details.drugbank_id DB03638
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "Cytidyl-2'-5'-phospho-guanosine"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CG2
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03638
_pdbe_chem_comp_drugbank_classification.parent 'Purine ribonucleoside monophosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Purine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as purine ribonucleoside monophosphates. These are nucleotides consisting of a purine base linked to a ribose to which one monophosphate group is attached.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CG2 N1G N 5.104 -5.885 1
CG2 C2G C 5.104 -4.385 2
CG2 N2G N 3.805 -3.635 3
CG2 N3G N 6.404 -3.635 4
CG2 C4G C 7.702 -4.385 5
CG2 C5G C 7.702 -5.885 6
CG2 C6G C 6.404 -6.635 7
CG2 O6G O 6.404 -8.135 8
CG2 N7G N 9.122 -6.342 9
CG2 C8G C 9.997 -5.135 10
CG2 N9G N 9.122 -3.928 11
CG2 "CA'" C 9.588 -2.502 12
CG2 "CB'" C 8.708 -1.287 13
CG2 "OB'" O 7.208 -1.284 14
CG2 "CC'" C 9.592 -0.075 15
CG2 "OC'" O 9.131 1.353 16
CG2 "CD'" C 11.018 -0.541 17
CG2 "OD'" O 11.015 -2.041 18
CG2 "CE'" C 12.233 0.339 19
CG2 "OE'" O 13.602 -0.274 20
CG2 P P 14.817 0.606 21
CG2 O1P O 15.697 -0.609 22
CG2 O2P O 13.938 1.821 23
CG2 "O5'" O 21.450 -2.057 24
CG2 "C5'" C 19.950 -2.054 25
CG2 "C4'" C 19.202 -0.754 26
CG2 "O4'" O 19.815 0.615 27
CG2 "C3'" C 17.711 -0.595 28
CG2 "O3'" O 16.705 -1.708 29
CG2 "C2'" C 17.401 0.873 30
CG2 "O2'" O 16.032 1.485 31
CG2 "C1'" C 18.702 1.621 32
CG2 N1U N 18.861 3.112 33
CG2 C2U C 20.233 3.720 34
CG2 O2U O 21.445 2.836 35
CG2 N3U N 20.392 5.212 36
CG2 C4U C 19.180 6.095 37
CG2 C5U C 17.809 5.488 38
CG2 C6U C 17.649 3.996 39
CG2 N4C N 19.339 7.587 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CG2 N1G C2G SINGLE NONE 1
CG2 N1G C6G SINGLE NONE 2
CG2 C2G N2G SINGLE NONE 3
CG2 C2G N3G DOUBLE NONE 4
CG2 N3G C4G SINGLE NONE 5
CG2 C4G C5G DOUBLE NONE 6
CG2 C4G N9G SINGLE NONE 7
CG2 C5G C6G SINGLE NONE 8
CG2 C5G N7G SINGLE NONE 9
CG2 C6G O6G DOUBLE NONE 10
CG2 N7G C8G DOUBLE NONE 11
CG2 C8G N9G SINGLE NONE 12
CG2 "CA'" N9G SINGLE BEGINWEDGE 13
CG2 "CA'" "CB'" SINGLE NONE 14
CG2 "CA'" "OD'" SINGLE NONE 15
CG2 "CB'" "OB'" SINGLE BEGINDASH 16
CG2 "CB'" "CC'" SINGLE NONE 17
CG2 "CC'" "OC'" SINGLE BEGINDASH 18
CG2 "CC'" "CD'" SINGLE NONE 19
CG2 "CD'" "OD'" SINGLE NONE 20
CG2 "CD'" "CE'" SINGLE BEGINWEDGE 21
CG2 "CE'" "OE'" SINGLE NONE 22
CG2 "OE'" P SINGLE NONE 23
CG2 P O1P DOUBLE NONE 24
CG2 P O2P SINGLE BEGINDASH 25
CG2 P "O2'" SINGLE NONE 26
CG2 "O5'" "C5'" SINGLE NONE 27
CG2 "C4'" "C5'" SINGLE BEGINDASH 28
CG2 "C4'" "O4'" SINGLE NONE 29
CG2 "C4'" "C3'" SINGLE NONE 30
CG2 "O4'" "C1'" SINGLE NONE 31
CG2 "C3'" "O3'" SINGLE BEGINWEDGE 32
CG2 "C3'" "C2'" SINGLE NONE 33
CG2 "C2'" "O2'" SINGLE BEGINWEDGE 34
CG2 "C2'" "C1'" SINGLE NONE 35
CG2 "C1'" N1U SINGLE BEGINDASH 36
CG2 N1U C2U SINGLE NONE 37
CG2 N1U C6U SINGLE NONE 38
CG2 C2U O2U DOUBLE NONE 39
CG2 C2U N3U SINGLE NONE 40
CG2 N3U C4U DOUBLE NONE 41
CG2 C4U C5U SINGLE NONE 42
CG2 C4U N4C SINGLE NONE 43
CG2 C5U C6U DOUBLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CG2 MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1ncn2[C@H]1CC[C@@H](CO[PH](=O)O[C@@H]2CCO[C@H]2n2cccnc2=O)O1' InChI=1S/C18H21N6O7P/c25-16-14-15(20-9-21-16)24(10-22-14)13-3-2-11(30-13)8-29-32(27)31-12-4-7-28-17(12)23-6-1-5-19-18(23)26/h1,5-6,9-13,17,32H,2-4,7-8H2,(H,20,21,25)/t11-,12+,13+,17+/m0/s1 UHIRQOSERCRGCP-SFDCBXKLSA-N
CG2 imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
CG2 phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
CG2 purine F3 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
CG2 pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
CG2 ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CG2 N1G S1 1
CG2 C2G S1 1
CG2 N3G S1 1
CG2 C4G S1 1
CG2 C5G S1 1
CG2 C6G S1 1
CG2 O6G S1 1
CG2 N7G S1 1
CG2 C8G S1 1
CG2 N9G S1 1
CG2 "CA'" S1 1
CG2 "CB'" S1 1
CG2 "CC'" S1 1
CG2 "CD'" S1 1
CG2 "OD'" S1 1
CG2 "CE'" S1 1
CG2 "OE'" S1 1
CG2 P S1 1
CG2 O1P S1 1
CG2 "C4'" S1 1
CG2 "O4'" S1 1
CG2 "C3'" S1 1
CG2 "C2'" S1 1
CG2 "O2'" S1 1
CG2 "C1'" S1 1
CG2 N1U S1 1
CG2 C2U S1 1
CG2 O2U S1 1
CG2 N3U S1 1
CG2 C4U S1 1
CG2 C5U S1 1
CG2 C6U S1 1
CG2 C4G F1 1
CG2 C5G F1 1
CG2 N7G F1 1
CG2 C8G F1 1
CG2 N9G F1 1
CG2 "OE'" F2 1
CG2 P F2 1
CG2 O1P F2 1
CG2 O2P F2 1
CG2 "O2'" F2 1
CG2 N7G F3 1
CG2 C8G F3 1
CG2 N9G F3 1
CG2 C4G F3 1
CG2 C5G F3 1
CG2 C6G F3 1
CG2 N1G F3 1
CG2 C2G F3 1
CG2 N3G F3 1
CG2 C5G F4 1
CG2 C4G F4 1
CG2 N3G F4 1
CG2 C2G F4 1
CG2 N1G F4 1
CG2 C6G F4 1
CG2 C5U F4 2
CG2 C4U F4 2
CG2 N3U F4 2
CG2 C2U F4 2
CG2 N1U F4 2
CG2 C6U F4 2
CG2 "CB'" F5 1
CG2 "CC'" F5 1
CG2 "CD'" F5 1
CG2 "OD'" F5 1
CG2 "CA'" F5 1
CG2 "CE'" F5 1
CG2 "OE'" F5 1
CG2 "OC'" F5 1
CG2 "OB'" F5 1
CG2 "C2'" F5 2
CG2 "C3'" F5 2
CG2 "C4'" F5 2
CG2 "O4'" F5 2
CG2 "C1'" F5 2
CG2 "C5'" F5 2
CG2 "O5'" F5 2
CG2 "O3'" F5 2
CG2 "O2'" F5 2
#
_pdbe_chem_comp_rdkit_properties.comp_id CG2
_pdbe_chem_comp_rdkit_properties.exactmw 588.133
_pdbe_chem_comp_rdkit_properties.amw 588.427
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 20
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 10
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 19
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 40
_pdbe_chem_comp_rdkit_properties.NumAtoms 65
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 21
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.526
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 9
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 257.361
_pdbe_chem_comp_rdkit_properties.tpsa 305.640
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.477
_pdbe_chem_comp_rdkit_properties.CrippenMR 125.409
_pdbe_chem_comp_rdkit_properties.chi0v 19.318
_pdbe_chem_comp_rdkit_properties.chi1v 11.218
_pdbe_chem_comp_rdkit_properties.chi2v 5.252
_pdbe_chem_comp_rdkit_properties.chi3v 5.252
_pdbe_chem_comp_rdkit_properties.chi4v 3.548
_pdbe_chem_comp_rdkit_properties.chi0n 43.424
_pdbe_chem_comp_rdkit_properties.chi1n 21.535
_pdbe_chem_comp_rdkit_properties.chi2n 4.531
_pdbe_chem_comp_rdkit_properties.chi3n 4.531
_pdbe_chem_comp_rdkit_properties.chi4n 2.931
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.300
_pdbe_chem_comp_rdkit_properties.kappa1 10.836
_pdbe_chem_comp_rdkit_properties.kappa2 10.594
_pdbe_chem_comp_rdkit_properties.kappa3 5.124
_pdbe_chem_comp_rdkit_properties.Phi 2.870
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CG2 UniChem DrugBank DB03638
CG2 UniChem PDBe CG2
CG2 UniChem PubChem 135488898
CG2 UniChem Nikkaji J1.011.637F
CG2 UniChem 'Probes And Drugs' PD059581
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CG2 N1G 7.573 -1.414 -2.145 ETKDGv3 1
CG2 C2G 7.577 -0.375 -1.137 ETKDGv3 2
CG2 N2G 8.738 0.433 -0.951 ETKDGv3 3
CG2 N3G 6.517 -0.166 -0.399 ETKDGv3 4
CG2 C4G 5.344 -0.974 -0.572 ETKDGv3 5
CG2 C5G 5.257 -1.921 -1.468 ETKDGv3 6
CG2 C6G 6.390 -2.204 -2.340 ETKDGv3 7
CG2 O6G 6.335 -3.092 -3.230 ETKDGv3 8
CG2 N7G 3.932 -2.435 -1.535 ETKDGv3 9
CG2 C8G 3.280 -1.751 -0.640 ETKDGv3 10
CG2 N9G 4.090 -0.794 0.060 ETKDGv3 11
CG2 "CA'" 3.627 0.416 0.735 ETKDGv3 12
CG2 "CB'" 3.304 1.513 -0.269 ETKDGv3 13
CG2 "OB'" 4.431 2.309 -0.528 ETKDGv3 14
CG2 "CC'" 2.202 2.280 0.426 ETKDGv3 15
CG2 "OC'" 2.698 3.378 1.158 ETKDGv3 16
CG2 "CD'" 1.581 1.225 1.356 ETKDGv3 17
CG2 "OD'" 2.470 0.133 1.490 ETKDGv3 18
CG2 "CE'" 0.231 0.717 0.835 ETKDGv3 19
CG2 "OE'" 0.402 0.119 -0.428 ETKDGv3 20
CG2 P -1.121 -0.370 -1.017 ETKDGv3 21
CG2 O1P -1.961 0.848 -1.337 ETKDGv3 22
CG2 O2P -0.874 -1.229 -2.453 ETKDGv3 23
CG2 "O5'" -4.607 0.755 3.697 ETKDGv3 24
CG2 "C5'" -4.795 -0.623 3.881 ETKDGv3 25
CG2 "C4'" -4.370 -1.409 2.632 ETKDGv3 26
CG2 "O4'" -5.125 -0.991 1.516 ETKDGv3 27
CG2 "C3'" -2.871 -1.242 2.310 ETKDGv3 28
CG2 "O3'" -2.174 -2.457 2.468 ETKDGv3 29
CG2 "C2'" -2.858 -0.741 0.873 ETKDGv3 30
CG2 "O2'" -1.885 -1.422 0.100 ETKDGv3 31
CG2 "C1'" -4.267 -1.088 0.405 ETKDGv3 32
CG2 N1U -4.714 -0.198 -0.677 ETKDGv3 33
CG2 C2U -5.084 1.176 -0.447 ETKDGv3 34
CG2 O2U -5.075 1.668 0.712 ETKDGv3 35
CG2 N3U -5.457 1.997 -1.558 ETKDGv3 36
CG2 C4U -5.455 1.533 -2.773 ETKDGv3 37
CG2 C5U -5.061 0.133 -3.041 ETKDGv3 38
CG2 C6U -4.710 -0.674 -2.036 ETKDGv3 39
CG2 N4C -5.832 2.385 -3.854 ETKDGv3 40
CG2 HNG1 8.417 -1.578 -2.738 ETKDGv3 41
CG2 H2G1 8.749 1.187 -0.230 ETKDGv3 42
CG2 H2G2 9.589 0.278 -1.536 ETKDGv3 43
CG2 H8G 2.222 -1.886 -0.461 ETKDGv3 44
CG2 "HC'" 4.420 0.763 1.436 ETKDGv3 45
CG2 HCA 2.914 1.067 -1.215 ETKDGv3 46
CG2 "HO'" 4.191 2.893 -1.294 ETKDGv3 47
CG2 HCB 1.474 2.664 -0.323 ETKDGv3 48
CG2 HOA 3.342 3.036 1.833 ETKDGv3 49
CG2 HCC 1.407 1.664 2.364 ETKDGv3 50
CG2 "HC'1" -0.473 1.579 0.782 ETKDGv3 51
CG2 "HC'2" -0.155 -0.028 1.567 ETKDGv3 52
CG2 H2P -0.286 -1.983 -2.196 ETKDGv3 53
CG2 HOB -5.444 1.107 3.297 ETKDGv3 54
CG2 HCA1 -5.859 -0.849 4.122 ETKDGv3 55
CG2 HCA2 -4.184 -0.954 4.748 ETKDGv3 56
CG2 HCD -4.605 -2.481 2.823 ETKDGv3 57
CG2 HCE -2.389 -0.485 2.967 ETKDGv3 58
CG2 HOC -2.592 -3.133 1.872 ETKDGv3 59
CG2 HCG -2.721 0.364 0.919 ETKDGv3 60
CG2 HCF -4.289 -2.147 0.053 ETKDGv3 61
CG2 H5U -5.050 -0.240 -4.057 ETKDGv3 62
CG2 H6U -4.414 -1.692 -2.257 ETKDGv3 63
CG2 H4C1 -6.111 3.376 -3.675 ETKDGv3 64
CG2 H4C2 -5.835 2.031 -4.836 ETKDGv3 65
#