data_CGW
#
_chem_comp.id CGW
_chem_comp.name "(2~{S})-2-azanyl-3-[2,4-bis(oxidanylidene)-5,7-dihydrothieno[3,4-d]pyrimidin-1-yl]propanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H11 N3 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-11-27
_chem_comp.pdbx_modified_date 2018-02-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 257.266
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CGW
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6F29
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CGW N N1 N 0 1 N N N N N N -4.333 30.251 -12.807 -2.229 -1.056 1.262 N CGW 1
CGW CA C1 C 0 1 N N S N N N -3.153 29.790 -13.533 -2.200 0.193 0.489 CA CGW 2
CGW C C2 C 0 1 N N N N N N -2.117 30.868 -13.368 -3.608 0.600 0.139 C CGW 3
CGW O O1 O 0 1 N N N N N N -2.543 31.927 -12.849 -3.874 1.872 -0.199 O CGW 4
CGW CB C3 C 0 1 N N N N N N -3.406 29.539 -15.028 -1.397 -0.021 -0.796 CB CGW 5
CGW OXT O2 O 0 1 N N N N N N -0.964 30.603 -13.754 -4.497 -0.217 0.164 OXT CGW 6
CGW CAF C4 C 0 1 N N N N N N -7.869 27.847 -15.810 3.186 1.056 0.510 CAF CGW 7
CGW CAG C5 C 0 1 N N N N N N -6.299 29.857 -15.618 0.726 1.937 -0.108 CAG CGW 8
CGW CAL C6 C 0 1 N N N N N N -6.536 27.532 -15.527 2.155 -0.013 0.169 CAL CGW 9
CGW CAM C7 C 0 1 N N N N N N -5.670 28.603 -15.421 0.927 0.426 -0.139 CAM CGW 10
CGW CAN C8 C 0 1 N N N N N N -6.054 26.288 -15.371 2.400 -1.421 0.157 CAN CGW 11
CGW CAO C9 C 0 1 N N N N N N -3.841 27.147 -14.990 0.193 -1.813 -0.465 CAO CGW 12
CGW NAI N2 N 0 1 N N N N N N -4.692 26.045 -15.090 1.418 -2.280 -0.158 NAI CGW 13
CGW NAQ N3 N 0 1 N N N N N N -4.341 28.395 -15.162 -0.053 -0.496 -0.458 NAQ CGW 14
CGW OAC O3 O 0 1 N N N N N N -6.799 25.308 -15.451 3.508 -1.844 0.434 OAC CGW 15
CGW OAD O4 O 0 1 N N N N N N -2.653 26.951 -14.755 -0.696 -2.591 -0.750 OAD CGW 16
CGW SAJ S1 S 0 1 N N N N N N -8.073 29.586 -15.395 2.438 2.591 -0.157 SAJ CGW 17
CGW H1 H1 H 0 1 N N N N N N -4.099 30.394 -11.845 -2.675 -0.917 2.157 H1 CGW 18
CGW H2 H2 H 0 1 N N N N N N -4.653 31.112 -13.203 -2.682 -1.792 0.743 H2 CGW 19
CGW H4 H4 H 0 1 N N N N N N -2.779 28.860 -13.079 -1.732 0.978 1.083 H4 CGW 20
CGW H5 H5 H 0 1 N N N N N N -1.832 32.553 -12.778 -4.792 2.085 -0.415 H5 CGW 21
CGW H6 H6 H 0 1 N N N N N N -2.456 29.303 -15.530 -1.899 -0.762 -1.418 H6 CGW 22
CGW H7 H7 H 0 1 N N N N N N -3.849 30.436 -15.485 -1.324 0.920 -1.339 H7 CGW 23
CGW H8 H8 H 0 1 N N N N N N -8.082 27.682 -16.877 3.320 1.131 1.589 H8 CGW 24
CGW H9 H9 H 0 1 N N N N N N -8.545 27.228 -15.201 4.135 0.845 0.017 H9 CGW 25
CGW H10 H10 H 0 1 N N N N N N -5.931 30.586 -14.881 0.163 2.268 -0.980 H10 CGW 26
CGW H11 H11 H 0 1 N N N N N N -6.096 30.228 -16.634 0.225 2.239 0.812 H11 CGW 27
CGW H12 H12 H 0 1 N N N N N N -4.348 25.114 -14.967 1.590 -3.235 -0.165 H12 CGW 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CGW CAF CAL SING N N 1
CGW CAF SAJ SING N N 2
CGW CAG CAM SING N N 3
CGW CAG SAJ SING N N 4
CGW CAL CAM DOUB N N 5
CGW CAL CAN SING N N 6
CGW OAC CAN DOUB N N 7
CGW CAM NAQ SING N N 8
CGW CAN NAI SING N N 9
CGW NAQ CB SING N N 10
CGW NAQ CAO SING N N 11
CGW NAI CAO SING N N 12
CGW CB CA SING N N 13
CGW CAO OAD DOUB N N 14
CGW OXT C DOUB N N 15
CGW CA C SING N N 16
CGW CA N SING N N 17
CGW C O SING N N 18
CGW N H1 SING N N 19
CGW N H2 SING N N 20
CGW CA H4 SING N N 21
CGW O H5 SING N N 22
CGW CB H6 SING N N 23
CGW CB H7 SING N N 24
CGW CAF H8 SING N N 25
CGW CAF H9 SING N N 26
CGW CAG H10 SING N N 27
CGW CAG H11 SING N N 28
CGW NAI H12 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CGW InChI InChI 1.03 InChI=1S/C9H11N3O4S/c10-5(8(14)15)1-12-6-3-17-2-4(6)7(13)11-9(12)16/h5H,1-3,10H2,(H,14,15)(H,11,13,16)/t5-/m0/s1
CGW InChIKey InChI 1.03 PETHBUJXGHVGGK-YFKPBYRVSA-N
CGW SMILES_CANONICAL CACTVS 3.385 N[C@@H](CN1C(=O)NC(=O)C2=C1CSC2)C(O)=O
CGW SMILES CACTVS 3.385 N[CH](CN1C(=O)NC(=O)C2=C1CSC2)C(O)=O
CGW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C1C2=C(CS1)N(C(=O)NC2=O)C[C@@H](C(=O)O)N
CGW SMILES "OpenEye OEToolkits" 2.0.6 C1C2=C(CS1)N(C(=O)NC2=O)CC(C(=O)O)N
#
_pdbx_chem_comp_identifier.comp_id CGW
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"(2~{S})-2-azanyl-3-[2,4-bis(oxidanylidene)-5,7-dihydrothieno[3,4-d]pyrimidin-1-yl]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CGW 'Create component' 2017-11-27 EBI
CGW 'Initial release' 2018-02-28 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CGW N N 7.848 1.948 1
CGW CA C 6.348 1.948 2
CGW C C 5.598 3.247 3
CGW O O 4.098 3.247 4
CGW CB C 5.598 0.649 5
CGW OXT O 6.348 4.546 6
CGW CAF C 8.316 -3.558 7
CGW CAG C 8.316 -1.144 8
CGW CAL C 6.897 -3.101 9
CGW CAM C 6.897 -1.601 10
CGW CAN C 5.598 -3.851 11
CGW CAO C 4.299 -1.601 12
CGW NAI N 4.299 -3.101 13
CGW NAQ N 5.598 -0.851 14
CGW OAC O 5.598 -5.351 15
CGW OAD O 3.000 -0.851 16
CGW SAJ S 9.192 -2.351 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CGW CAF CAL SINGLE NONE 1
CGW CAF SAJ SINGLE NONE 2
CGW CAG CAM SINGLE NONE 3
CGW CAG SAJ SINGLE NONE 4
CGW CAL CAM DOUBLE NONE 5
CGW CAL CAN SINGLE NONE 6
CGW OAC CAN DOUBLE NONE 7
CGW CAM NAQ SINGLE NONE 8
CGW CAN NAI SINGLE NONE 9
CGW NAQ CB SINGLE NONE 10
CGW NAQ CAO SINGLE NONE 11
CGW NAI CAO SINGLE NONE 12
CGW CB CA SINGLE NONE 13
CGW CAO OAD DOUBLE NONE 14
CGW OXT C DOUBLE NONE 15
CGW CA C SINGLE NONE 16
CGW CA N SINGLE BEGINWEDGE 17
CGW C O SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CGW MurckoScaffold S1 scaffold 'O=c1[nH]c2c(c(=O)[nH]1)CSC2' InChI=1S/C6H6N2O2S/c9-5-3-1-11-2-4(3)7-6(10)8-5/h1-2H2,(H2,7,8,9,10) RCZJDYOOUXZORM-UHFFFAOYSA-N
CGW peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
CGW pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CGW CAF S1 1
CGW CAG S1 1
CGW CAL S1 1
CGW CAM S1 1
CGW CAN S1 1
CGW CAO S1 1
CGW NAI S1 1
CGW NAQ S1 1
CGW OAC S1 1
CGW OAD S1 1
CGW SAJ S1 1
CGW OXT F1 1
CGW C F1 1
CGW CA F1 1
CGW N F1 1
CGW CAL F2 1
CGW CAM F2 1
CGW NAQ F2 1
CGW CAO F2 1
CGW NAI F2 1
CGW CAN F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CGW
_pdbe_chem_comp_rdkit_properties.exactmw 257.047
_pdbe_chem_comp_rdkit_properties.amw 257.271
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.444
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 115.357
_pdbe_chem_comp_rdkit_properties.tpsa 118.180
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.386
_pdbe_chem_comp_rdkit_properties.CrippenMR 61.617
_pdbe_chem_comp_rdkit_properties.chi0v 8.699
_pdbe_chem_comp_rdkit_properties.chi1v 4.883
_pdbe_chem_comp_rdkit_properties.chi2v 2.376
_pdbe_chem_comp_rdkit_properties.chi3v 2.376
_pdbe_chem_comp_rdkit_properties.chi4v 1.697
_pdbe_chem_comp_rdkit_properties.chi0n 18.883
_pdbe_chem_comp_rdkit_properties.chi1n 9.316
_pdbe_chem_comp_rdkit_properties.chi2n 1.775
_pdbe_chem_comp_rdkit_properties.chi3n 1.775
_pdbe_chem_comp_rdkit_properties.chi4n 1.070
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.540
_pdbe_chem_comp_rdkit_properties.kappa1 4.287
_pdbe_chem_comp_rdkit_properties.kappa2 4.379
_pdbe_chem_comp_rdkit_properties.kappa3 2.131
_pdbe_chem_comp_rdkit_properties.Phi 1.104
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CGW UniChem ChEMBL CHEMBL492469
CGW UniChem PDBe CGW
CGW UniChem ZINC ZINC000040423756
CGW UniChem 'PubChem TPHARMA' 49658974
CGW UniChem BindingDb 50252920
CGW UniChem PubChem 24755637
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CGW N 1.950 1.109 0.381 ETKDGv3 1
CGW CA 2.102 -0.331 0.164 ETKDGv3 2
CGW C 3.435 -0.641 -0.465 ETKDGv3 3
CGW O 4.359 -1.422 0.224 ETKDGv3 4
CGW CB 0.952 -0.874 -0.704 ETKDGv3 5
CGW OXT 3.720 -0.197 -1.609 ETKDGv3 6
CGW CAF -3.242 1.699 -0.174 ETKDGv3 7
CGW CAG -1.033 1.291 -1.534 ETKDGv3 8
CGW CAL -2.385 0.578 0.293 ETKDGv3 9
CGW CAM -1.256 0.371 -0.379 ETKDGv3 10
CGW CAN -2.762 -0.284 1.424 ETKDGv3 11
CGW CAO -0.707 -1.597 1.050 ETKDGv3 12
CGW NAI -1.913 -1.373 1.784 ETKDGv3 13
CGW NAQ -0.347 -0.704 -0.028 ETKDGv3 14
CGW OAC -3.824 -0.072 2.068 ETKDGv3 15
CGW OAD 0.030 -2.573 1.353 ETKDGv3 16
CGW SAJ -2.402 2.490 -1.579 ETKDGv3 17
CGW H1 2.131 1.619 -0.515 ETKDGv3 18
CGW H2 2.679 1.420 1.064 ETKDGv3 19
CGW H4 2.062 -0.839 1.153 ETKDGv3 20
CGW H5 5.260 -1.640 -0.183 ETKDGv3 21
CGW H6 1.120 -1.956 -0.905 ETKDGv3 22
CGW H7 0.959 -0.379 -1.697 ETKDGv3 23
CGW H8 -4.229 1.312 -0.503 ETKDGv3 24
CGW H9 -3.379 2.440 0.642 ETKDGv3 25
CGW H10 -1.026 0.715 -2.483 ETKDGv3 26
CGW H11 -0.079 1.842 -1.415 ETKDGv3 27
CGW H12 -2.174 -2.005 2.574 ETKDGv3 28
#