data_CHD
#
_chem_comp.id CHD
_chem_comp.name "CHOLIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H40 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-02-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 408.571
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CHD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1HRK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CHD C1 C1 C 0 1 N N N N N N 7.237 -17.943 -27.412 1.815 0.775 -4.042 C1 CHD 1
CHD C2 C2 C 0 1 N N N N N N 7.831 -16.570 -27.670 1.791 -0.702 -4.440 C2 CHD 2
CHD C3 C3 C 0 1 N N R N N N 9.197 -16.515 -26.986 0.601 -0.962 -5.365 C3 CHD 3
CHD O3 O3 O 0 1 N N N N N N 9.791 -15.235 -27.220 0.579 -2.342 -5.735 O3 CHD 4
CHD C4 C4 C 0 1 N N N N N N 9.032 -16.800 -25.503 -0.696 -0.608 -4.638 C4 CHD 5
CHD C5 C5 C 0 1 N N S N N N 8.375 -18.168 -25.213 -0.673 0.869 -4.240 C5 CHD 6
CHD C6 C6 C 0 1 N N N N N N 8.222 -18.445 -23.704 -1.972 1.222 -3.514 C6 CHD 7
CHD C7 C7 C 0 1 N N R N N N 7.207 -17.531 -23.017 -2.105 0.362 -2.255 C7 CHD 8
CHD O7 O7 O 0 1 N N N N N N 7.712 -16.231 -22.974 -2.125 -1.018 -2.622 O7 CHD 9
CHD C8 C8 C 0 1 N N R N N N 5.837 -17.620 -23.755 -0.916 0.626 -1.330 C8 CHD 10
CHD C9 C9 C 0 1 N N S N N N 6.000 -17.276 -25.246 0.395 0.275 -2.049 C9 CHD 11
CHD C10 C10 C 0 1 N N S N N N 7.006 -18.252 -25.921 0.517 1.128 -3.313 C10 CHD 12
CHD C11 C11 C 0 1 N N N N N N 4.619 -17.330 -25.915 1.609 0.494 -1.153 C11 CHD 13
CHD C12 C12 C 0 1 N N S N N N 3.569 -16.371 -25.259 1.473 -0.273 0.172 C12 CHD 14
CHD O12 O12 O 0 1 N N N N N N 3.949 -15.041 -25.442 1.402 -1.677 -0.084 O12 CHD 15
CHD C13 C13 C 0 1 N N R N N N 3.410 -16.751 -23.778 0.176 0.131 0.840 C13 CHD 16
CHD C14 C14 C 0 1 N N S N N N 4.808 -16.695 -23.108 -1.003 -0.251 -0.096 C14 CHD 17
CHD C15 C15 C 0 1 N N N N N N 4.509 -16.878 -21.610 -2.213 -0.009 0.813 C15 CHD 18
CHD C16 C16 C 0 1 N N N N N N 3.099 -16.254 -21.440 -1.742 -0.581 2.178 C16 CHD 19
CHD C17 C17 C 0 1 N N R N N N 2.651 -15.778 -22.839 -0.194 -0.536 2.160 C17 CHD 20
CHD C18 C18 C 0 1 N N N N N N 2.787 -18.148 -23.686 0.130 1.653 0.998 C18 CHD 21
CHD C19 C19 C 0 1 N N N N N N 6.453 -19.702 -25.876 0.541 2.604 -2.912 C19 CHD 22
CHD C20 C20 C 0 1 N N R N N N 1.112 -15.783 -22.944 0.325 0.291 3.337 C20 CHD 23
CHD C21 C21 C 0 1 N N N N N N 0.631 -15.363 -24.304 1.851 0.380 3.264 C21 CHD 24
CHD C22 C22 C 0 1 N N N N N N 0.515 -14.816 -21.915 -0.083 -0.377 4.651 C22 CHD 25
CHD C23 C23 C 0 1 N N N N N N -1.013 -14.775 -21.949 0.436 0.450 5.828 C23 CHD 26
CHD O25 O25 O 0 1 N N N N N N -1.042 -13.498 -19.917 -0.604 -1.235 7.105 O25 CHD 27
CHD C24 C24 C 0 1 N N N N N N -1.645 -13.837 -20.947 0.033 -0.208 7.122 C24 CHD 28
CHD O26 O26 O 0 1 N N N N N N -2.818 -13.452 -21.260 0.382 0.344 8.294 O26 CHD 29
CHD H11 1H1 H 0 1 N N N N N N 6.293 -18.077 -27.991 2.664 0.960 -3.383 H11 CHD 30
CHD H12A 2H1 H 0 0 N N N N N N 7.862 -18.736 -27.884 1.908 1.391 -4.937 H12A CHD 31
CHD H21 1H2 H 0 1 N N N N N N 7.880 -16.316 -28.754 1.698 -1.317 -3.545 H21 CHD 32
CHD H22 2H2 H 0 1 N N N N N N 7.155 -15.740 -27.354 2.717 -0.953 -4.958 H22 CHD 33
CHD H3 H3 H 0 1 N N N N N N 9.876 -17.291 -27.408 0.696 -0.347 -6.260 H3 CHD 34
CHD HO3 HO3 H 0 1 N N N N N N 10.639 -15.200 -26.794 1.413 -2.523 -6.189 HO3 CHD 35
CHD H41 1H4 H 0 1 N N N N N N 10.007 -16.708 -24.971 -0.791 -1.223 -3.743 H41 CHD 36
CHD H42 2H4 H 0 1 N N N N N N 8.471 -15.977 -25.001 -1.544 -0.793 -5.297 H42 CHD 37
CHD H5 H5 H 0 1 N N N N N N 9.053 -18.956 -25.615 -0.577 1.484 -5.135 H5 CHD 38
CHD H61 1H6 H 0 1 N N N N N N 7.974 -19.516 -23.522 -2.819 1.035 -4.173 H61 CHD 39
CHD H62 2H6 H 0 1 N N N N N N 9.210 -18.393 -23.190 -1.956 2.275 -3.233 H62 CHD 40
CHD H7 H7 H 0 1 N N N N N N 7.033 -17.857 -21.965 -3.031 0.614 -1.739 H7 CHD 41
CHD HO7 HO7 H 0 1 N N N N N N 7.081 -15.663 -22.547 -2.888 -1.141 -3.204 HO7 CHD 42
CHD H8 H8 H 0 1 N N N N N N 5.468 -18.669 -23.669 -0.905 1.675 -1.035 H8 CHD 43
CHD H9 H9 H 0 1 N N N N N N 6.416 -16.248 -25.361 0.352 -0.775 -2.335 H9 CHD 44
CHD H111 1H11 H 0 0 N N N N N N 4.702 -17.134 -27.009 2.503 0.151 -1.674 H111 CHD 45
CHD H112 2H11 H 0 0 N N N N N N 4.234 -18.376 -25.942 1.708 1.558 -0.940 H112 CHD 46
CHD H12 H12 H 0 1 N N N N N N 2.573 -16.482 -25.749 2.326 -0.057 0.815 H12 CHD 47
CHD HO12 HO12 H 0 0 N N N N N N 3.312 -14.459 -25.044 2.222 -1.920 -0.536 HO12 CHD 48
CHD H14 H14 H 0 1 N N N N N N 5.343 -15.728 -23.258 -0.941 -1.303 -0.374 H14 CHD 49
CHD H151 1H15 H 0 0 N N N N N N 4.594 -17.929 -21.247 -3.084 -0.552 0.447 H151 CHD 50
CHD H152 2H15 H 0 0 N N N N N N 5.285 -16.455 -20.930 -2.427 1.056 0.894 H152 CHD 51
CHD H161 1H16 H 0 0 N N N N N N 2.368 -16.943 -20.955 -2.085 -1.609 2.291 H161 CHD 52
CHD H162 2H16 H 0 0 N N N N N N 3.064 -15.448 -20.669 -2.125 0.033 2.993 H162 CHD 53
CHD H17 H17 H 0 1 N N N N N N 2.896 -14.722 -23.100 0.213 -1.546 2.200 H17 CHD 54
CHD H181 1H18 H 0 0 N N N N N N 2.671 -18.423 -22.611 0.304 2.124 0.030 H181 CHD 55
CHD H182 2H18 H 0 0 N N N N N N 1.827 -18.223 -24.249 -0.848 1.949 1.375 H182 CHD 56
CHD H183 3H18 H 0 0 N N N N N N 3.364 -18.909 -24.260 0.901 1.969 1.700 H183 CHD 57
CHD H191 1H19 H 0 0 N N N N N N 6.285 -19.925 -24.796 0.636 3.222 -3.805 H191 CHD 58
CHD H192 2H19 H 0 0 N N N N N N 5.549 -19.856 -26.510 -0.383 2.855 -2.393 H192 CHD 59
CHD H193 3H19 H 0 0 N N N N N N 7.104 -20.445 -26.391 1.389 2.787 -2.252 H193 CHD 60
CHD H20 H20 H 0 1 N N N N N N 0.781 -16.830 -22.753 -0.099 1.294 3.292 H20 CHD 61
CHD H211 1H21 H 0 0 N N N N N N -0.481 -15.366 -24.379 2.276 -0.622 3.309 H211 CHD 62
CHD H212 2H21 H 0 0 N N N N N N 1.050 -14.370 -24.590 2.143 0.856 2.328 H212 CHD 63
CHD H213 3H21 H 0 0 N N N N N N 1.090 -15.988 -25.104 2.222 0.969 4.102 H213 CHD 64
CHD H221 1H22 H 0 0 N N N N N N 0.884 -15.049 -20.889 -1.170 -0.440 4.703 H221 CHD 65
CHD H222 2H22 H 0 0 N N N N N N 0.943 -13.793 -22.034 0.341 -1.380 4.696 H222 CHD 66
CHD H231 1H23 H 0 0 N N N N N N -1.370 -14.537 -22.978 1.523 0.513 5.776 H231 CHD 67
CHD H232 2H23 H 0 0 N N N N N N -1.429 -15.802 -21.831 0.011 1.452 5.783 H232 CHD 68
CHD H26 H26 H 0 1 N N N N N N -3.215 -12.862 -20.630 0.124 -0.078 9.124 H26 CHD 69
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CHD C1 C2 SING N N 1
CHD C1 C10 SING N N 2
CHD C1 H11 SING N N 3
CHD C1 H12A SING N N 4
CHD C2 C3 SING N N 5
CHD C2 H21 SING N N 6
CHD C2 H22 SING N N 7
CHD C3 O3 SING N N 8
CHD C3 C4 SING N N 9
CHD C3 H3 SING N N 10
CHD O3 HO3 SING N N 11
CHD C4 C5 SING N N 12
CHD C4 H41 SING N N 13
CHD C4 H42 SING N N 14
CHD C5 C6 SING N N 15
CHD C5 C10 SING N N 16
CHD C5 H5 SING N N 17
CHD C6 C7 SING N N 18
CHD C6 H61 SING N N 19
CHD C6 H62 SING N N 20
CHD C7 O7 SING N N 21
CHD C7 C8 SING N N 22
CHD C7 H7 SING N N 23
CHD O7 HO7 SING N N 24
CHD C8 C9 SING N N 25
CHD C8 C14 SING N N 26
CHD C8 H8 SING N N 27
CHD C9 C10 SING N N 28
CHD C9 C11 SING N N 29
CHD C9 H9 SING N N 30
CHD C10 C19 SING N N 31
CHD C11 C12 SING N N 32
CHD C11 H111 SING N N 33
CHD C11 H112 SING N N 34
CHD C12 O12 SING N N 35
CHD C12 C13 SING N N 36
CHD C12 H12 SING N N 37
CHD O12 HO12 SING N N 38
CHD C13 C14 SING N N 39
CHD C13 C17 SING N N 40
CHD C13 C18 SING N N 41
CHD C14 C15 SING N N 42
CHD C14 H14 SING N N 43
CHD C15 C16 SING N N 44
CHD C15 H151 SING N N 45
CHD C15 H152 SING N N 46
CHD C16 C17 SING N N 47
CHD C16 H161 SING N N 48
CHD C16 H162 SING N N 49
CHD C17 C20 SING N N 50
CHD C17 H17 SING N N 51
CHD C18 H181 SING N N 52
CHD C18 H182 SING N N 53
CHD C18 H183 SING N N 54
CHD C19 H191 SING N N 55
CHD C19 H192 SING N N 56
CHD C19 H193 SING N N 57
CHD C20 C21 SING N N 58
CHD C20 C22 SING N N 59
CHD C20 H20 SING N N 60
CHD C21 H211 SING N N 61
CHD C21 H212 SING N N 62
CHD C21 H213 SING N N 63
CHD C22 C23 SING N N 64
CHD C22 H221 SING N N 65
CHD C22 H222 SING N N 66
CHD C23 C24 SING N N 67
CHD C23 H231 SING N N 68
CHD C23 H232 SING N N 69
CHD O25 C24 DOUB N N 70
CHD C24 O26 SING N N 71
CHD O26 H26 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CHD SMILES ACDLabs 10.04 O=C(O)CCC(C3CCC2C1C(O)CC4CC(O)CCC4(C)C1CC(O)C23C)C
CHD SMILES_CANONICAL CACTVS 3.341 C[C@H](CCC(O)=O)[C@H]1CC[C@H]2[C@@H]3[C@H](O)C[C@@H]4C[C@H](O)CC[C@]4(C)[C@H]3C[C@H](O)[C@]12C
CHD SMILES CACTVS 3.341 C[CH](CCC(O)=O)[CH]1CC[CH]2[CH]3[CH](O)C[CH]4C[CH](O)CC[C]4(C)[CH]3C[CH](O)[C]12C
CHD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H](CCC(=O)O)[C@H]1CC[C@@H]2[C@@]1([C@H](C[C@H]3[C@H]2[C@@H](C[C@H]4[C@@]3(CC[C@H](C4)O)C)O)O)C
CHD SMILES "OpenEye OEToolkits" 1.5.0 CC(CCC(=O)O)C1CCC2C1(C(CC3C2C(CC4C3(CCC(C4)O)C)O)O)C
CHD InChI InChI 1.03 InChI=1S/C24H40O5/c1-13(4-7-21(28)29)16-5-6-17-22-18(12-20(27)24(16,17)3)23(2)9-8-15(25)10-14(23)11-19(22)26/h13-20,22,25-27H,4-12H2,1-3H3,(H,28,29)/t13-,14+,15-,16-,17+,18+,19-,20+,22+,23+,24-/m1/s1
CHD InChIKey InChI 1.03 BHQCQFFYRZLCQQ-OELDTZBJSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CHD "SYSTEMATIC NAME" ACDLabs 10.04 "(3alpha,5beta,7alpha,8alpha,12alpha,14beta,17alpha)-3,7,12-trihydroxycholan-24-oic acid"
CHD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(4R)-4-[(3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CHD 'Create component' 2000-02-08 RCSB
CHD 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id CHD
_pdbe_chem_comp_drugbank_details.drugbank_id DB02659
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Cholic Acid'
_pdbe_chem_comp_drugbank_details.description
'A major primary bile acid produced in the liver and usually conjugated with glycine or taurine. It facilitates fat absorption and cholesterol excretion. [PubChem] Cholic acid, formulated as Cholbam capsules, is approved by the United States Food and Drug Administration as a treatment for children and adults with bile acid synthesis disorders due to single enzyme defects, and for peroxisomal disorders (such as Zellweger syndrome).'
_pdbe_chem_comp_drugbank_details.cas_number 81-25-4
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
CHD 'Cholic Acid' ChEMBL 'International Nonproprietary Name'
CHD 'Cholic Acid' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CHD
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02659
_pdbe_chem_comp_drugbank_classification.parent 'Trihydroxy bile acids, alcohols and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Steroids and steroid derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Lipids and lipid-like molecules'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as trihydroxy bile acids, alcohols and derivatives. These are prenol lipids structurally characterized by a bile acid or alcohol which bears three hydroxyl groups.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
CHD DB02659 'Alcohol dehydrogenase 1C' Humans P00326 unknown 1
CHD DB02659 'Estrogen-related receptor gamma' Humans P62508 unknown 2
CHD DB02659 Gastrotropin Humans P51161 unknown 3
CHD DB02659 'Cytochrome c oxidase subunit 4 isoform 1, mitochondrial' Humans P13073 unknown 4
CHD DB02659 'Cytochrome c oxidase subunit 1' Humans P00395 unknown 5
CHD DB02659 'Cytochrome c oxidase subunit 2' Humans P00403 unknown 6
CHD DB02659 'Cytochrome c oxidase subunit 3' Humans P00414 unknown 7
CHD DB02659 'Cytochrome c oxidase subunit 5A, mitochondrial' Humans P20674 unknown 8
CHD DB02659 'Cytochrome c oxidase subunit 5B, mitochondrial' Humans P10606 unknown 9
CHD DB02659 'Cytochrome c oxidase subunit 6C' Humans P09669 unknown 10
CHD DB02659 'Cytochrome c oxidase subunit 7B, mitochondrial' Humans P24311 unknown 11
CHD DB02659 'Cytochrome c oxidase subunit 7C, mitochondrial' Humans P15954 unknown 12
CHD DB02659 'Cytochrome c oxidase subunit 8A, mitochondrial' Humans P10176 unknown 13
CHD DB02659 'Cytochrome c oxidase subunit 6A2, mitochondrial' Humans Q02221 unknown 14
CHD DB02659 'Cytochrome c oxidase subunit 6B1' Humans P14854 unknown 15
CHD DB02659 'Cytochrome c oxidase subunit 7A1, mitochondrial' Humans P24310 unknown 16
CHD DB02659 'Phospholipase A2' Humans P04054 unknown 17
CHD DB02659 'Liver carboxylesterase 1' Humans P23141 unknown 18
CHD DB02659 'Choloylglycine hydrolase' 'Clostridium perfringens (strain 13 / Type A)' P54965 unknown 19
CHD DB02659 'Bile acid receptor' Humans Q96RI1 unknown 20
CHD DB02659 'G-protein coupled bile acid receptor 1' Humans Q8TDU6 unknown 21
CHD DB02659 'Ferrochelatase, mitochondrial' Humans P22830 unknown 22
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CHD C1 C 6.540 -1.448 1
CHD C2 C 5.118 -2.240 2
CHD C3 C 5.106 -3.867 3
CHD O3 O 3.804 -4.612 4
CHD C4 C 6.515 -4.681 5
CHD C5 C 7.918 -3.857 6
CHD C6 C 9.271 -4.638 7
CHD C7 C 10.618 -3.846 8
CHD O7 O 11.926 -4.581 9
CHD C8 C 10.594 -2.284 10
CHD C9 C 9.295 -1.534 11
CHD C10 C 7.930 -2.294 12
CHD C11 C 9.295 -0.034 13
CHD C12 C 10.594 0.716 14
CHD O12 O 10.594 2.216 15
CHD C13 C 11.893 -0.034 16
CHD C14 C 11.893 -1.534 17
CHD C15 C 13.312 -1.991 18
CHD C16 C 14.188 -0.784 19
CHD C17 C 13.312 0.423 20
CHD C18 C 11.893 1.466 21
CHD C19 C 7.942 -0.794 22
CHD C20 C 13.779 1.849 23
CHD C21 C 12.777 2.966 24
CHD C22 C 15.246 2.158 25
CHD C23 C 15.712 3.584 26
CHD O25 O 17.646 5.319 27
CHD C24 C 17.180 3.893 28
CHD O26 O 18.182 2.777 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CHD C1 C2 SINGLE NONE 1
CHD C1 C10 SINGLE NONE 2
CHD C2 C3 SINGLE NONE 3
CHD C3 O3 SINGLE BEGINDASH 4
CHD C3 C4 SINGLE NONE 5
CHD C4 C5 SINGLE NONE 6
CHD C5 C6 SINGLE NONE 7
CHD C5 C10 SINGLE NONE 8
CHD C6 C7 SINGLE NONE 9
CHD C7 O7 SINGLE BEGINDASH 10
CHD C7 C8 SINGLE NONE 11
CHD C8 C9 SINGLE NONE 12
CHD C8 C14 SINGLE NONE 13
CHD C9 C10 SINGLE NONE 14
CHD C9 C11 SINGLE NONE 15
CHD C10 C19 SINGLE BEGINWEDGE 16
CHD C11 C12 SINGLE NONE 17
CHD C12 O12 SINGLE BEGINDASH 18
CHD C12 C13 SINGLE NONE 19
CHD C13 C14 SINGLE NONE 20
CHD C13 C17 SINGLE NONE 21
CHD C13 C18 SINGLE BEGINWEDGE 22
CHD C14 C15 SINGLE NONE 23
CHD C15 C16 SINGLE NONE 24
CHD C17 C16 SINGLE BEGINWEDGE 25
CHD C17 C20 SINGLE NONE 26
CHD C20 C21 SINGLE BEGINDASH 27
CHD C20 C22 SINGLE NONE 28
CHD C22 C23 SINGLE NONE 29
CHD C23 C24 SINGLE NONE 30
CHD O25 C24 DOUBLE NONE 31
CHD C24 O26 SINGLE NONE 32
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CHD MurckoScaffold S1 scaffold 'C1CC[C@H]2CC[C@H]3[C@@H]4CCCC4CC[C@@H]3C2C1' InChI=1S/C17H28/c1-2-6-14-12(4-1)8-10-17-15-7-3-5-13(15)9-11-16(14)17/h12-17H,1-11H2/t12-,13?,14?,15+,16+,17-/m0/s1 UACIBCPNAKBWHX-CAPHIICJSA-N
CHD cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
CHD cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
CHD steroid-like F3 fragment C1~C~C~C2~C(~C~1)~C~C~C1~C3~C~C~C~C~3~C~C~C~2~1 ? ?
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CHD C1 S1 1
CHD C2 S1 1
CHD C3 S1 1
CHD C4 S1 1
CHD C5 S1 1
CHD C6 S1 1
CHD C7 S1 1
CHD C8 S1 1
CHD C9 S1 1
CHD C10 S1 1
CHD C11 S1 1
CHD C12 S1 1
CHD C13 S1 1
CHD C14 S1 1
CHD C15 S1 1
CHD C16 S1 1
CHD C17 S1 1
CHD C1 F1 1
CHD C2 F1 1
CHD C3 F1 1
CHD C4 F1 1
CHD C5 F1 1
CHD C10 F1 1
CHD C5 F1 2
CHD C6 F1 2
CHD C7 F1 2
CHD C8 F1 2
CHD C9 F1 2
CHD C10 F1 2
CHD C8 F1 3
CHD C9 F1 3
CHD C11 F1 3
CHD C12 F1 3
CHD C13 F1 3
CHD C14 F1 3
CHD C13 F2 1
CHD C14 F2 1
CHD C15 F2 1
CHD C16 F2 1
CHD C17 F2 1
CHD C2 F3 1
CHD C3 F3 1
CHD C4 F3 1
CHD C5 F3 1
CHD C10 F3 1
CHD C1 F3 1
CHD C9 F3 1
CHD C8 F3 1
CHD C7 F3 1
CHD C6 F3 1
CHD C14 F3 1
CHD C13 F3 1
CHD C12 F3 1
CHD C11 F3 1
CHD C17 F3 1
CHD C16 F3 1
CHD C15 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CHD
_pdbe_chem_comp_rdkit_properties.exactmw 408.288
_pdbe_chem_comp_rdkit_properties.amw 408.579
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 69
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.958
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 4
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 11
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 230.994
_pdbe_chem_comp_rdkit_properties.tpsa 97.990
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.449
_pdbe_chem_comp_rdkit_properties.CrippenMR 110.037
_pdbe_chem_comp_rdkit_properties.chi0v 14.041
_pdbe_chem_comp_rdkit_properties.chi1v 7.771
_pdbe_chem_comp_rdkit_properties.chi2v 4.499
_pdbe_chem_comp_rdkit_properties.chi3v 4.499
_pdbe_chem_comp_rdkit_properties.chi4v 3.184
_pdbe_chem_comp_rdkit_properties.chi0n 54.041
_pdbe_chem_comp_rdkit_properties.chi1n 27.404
_pdbe_chem_comp_rdkit_properties.chi2n 4.499
_pdbe_chem_comp_rdkit_properties.chi3n 4.499
_pdbe_chem_comp_rdkit_properties.chi4n 3.184
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.650
_pdbe_chem_comp_rdkit_properties.kappa1 4.166
_pdbe_chem_comp_rdkit_properties.kappa2 7.491
_pdbe_chem_comp_rdkit_properties.kappa3 3.267
_pdbe_chem_comp_rdkit_properties.Phi 1.076
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CHD UniChem ChEMBL CHEMBL205596
CHD UniChem DrugBank DB02659
CHD UniChem PDBe CHD
CHD UniChem 'Guide to Pharmacology' 609
CHD UniChem 'PubChem DOTF' 123055413
CHD UniChem 'KEGG LIGAND' C00695
CHD UniChem ChEBI 16359
CHD UniChem ZINC ZINC000006858022
CHD UniChem eMolecules 29504030
CHD UniChem eMolecules 29541145
CHD UniChem fdasrs G1JO7801AE
CHD UniChem PharmGKB PA166160055
CHD UniChem HMDB HMDB0000619
CHD UniChem 'PubChem TPHARMA' 15277848
CHD UniChem LINCS LSM-5541
CHD UniChem ACTor 73163-53-8
CHD UniChem Nikkaji J8.604E
CHD UniChem BindingDb 21680
CHD UniChem 'EPA CompTox Dashboard' DTXSID6040660
CHD UniChem LipidMaps LMST04010001
CHD UniChem DrugCentral 3096
CHD UniChem MetaboLights MTBLC16359
CHD UniChem BRENDA 1070
CHD UniChem BRENDA 115473
CHD UniChem BRENDA 150780
CHD UniChem BRENDA 153390
CHD UniChem BRENDA 154374
CHD UniChem BRENDA 15542
CHD UniChem BRENDA 20620
CHD UniChem BRENDA 229271
CHD UniChem BRENDA 229272
CHD UniChem BRENDA 37805
CHD UniChem BRENDA 45179
CHD UniChem BRENDA 74686
CHD UniChem BRENDA 783
CHD UniChem ChemicalBook CB52741764
CHD UniChem ChemicalBook CB9263222
CHD UniChem DailyMed 'CHOLIC ACID'
CHD UniChem ClinicalTrials CHOLBAM
CHD UniChem ClinicalTrials 'CHOLIC ACID'
CHD UniChem rxnorm CHOLBAM
CHD UniChem rxnorm 'CHOLIC ACID'
CHD UniChem MedChemExpress HY-N0324
CHD UniChem 'Probes And Drugs' PD009388
CHD UniChem eMolecules 30512922
CHD UniChem SureChEMBL SCHEMBL27461
CHD UniChem 'PubChem TPHARMA' 14757556
CHD UniChem PubChem 221493
CHD UniChem Mcule MCULE-7032345049
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CHD C1 -3.880 1.632 -0.206 ETKDGv3 1
CHD C2 -5.167 1.709 0.645 ETKDGv3 2
CHD C3 -5.728 0.335 1.072 ETKDGv3 3
CHD O3 -7.132 0.393 1.072 ETKDGv3 4
CHD C4 -5.257 -0.779 0.132 ETKDGv3 5
CHD C5 -3.709 -0.918 0.074 ETKDGv3 6
CHD C6 -3.363 -1.714 -1.223 ETKDGv3 7
CHD C7 -1.849 -1.972 -1.452 ETKDGv3 8
CHD O7 -1.572 -1.927 -2.830 ETKDGv3 9
CHD C8 -0.983 -0.941 -0.697 ETKDGv3 10
CHD C9 -1.669 0.455 -0.745 ETKDGv3 11
CHD C10 -2.927 0.469 0.203 ETKDGv3 12
CHD C11 -0.682 1.683 -0.669 ETKDGv3 13
CHD C12 0.727 1.464 -0.033 ETKDGv3 14
CHD O12 1.615 2.428 -0.545 ETKDGv3 15
CHD C13 1.324 0.013 -0.205 ETKDGv3 16
CHD C14 0.463 -0.800 -1.196 ETKDGv3 17
CHD C15 1.281 -2.045 -1.519 ETKDGv3 18
CHD C16 2.737 -1.547 -1.506 ETKDGv3 19
CHD C17 2.701 -0.105 -0.929 ETKDGv3 20
CHD C18 1.404 -0.647 1.210 ETKDGv3 21
CHD C19 -2.457 0.687 1.671 ETKDGv3 22
CHD C20 3.988 0.372 -0.160 ETKDGv3 23
CHD C21 5.020 0.898 -1.177 ETKDGv3 24
CHD C22 4.653 -0.697 0.765 ETKDGv3 25
CHD C23 5.219 -0.116 2.073 ETKDGv3 26
CHD O25 7.539 0.178 1.577 ETKDGv3 27
CHD C24 6.437 0.724 1.852 ETKDGv3 28
CHD O26 6.346 2.110 1.929 ETKDGv3 29
CHD H11 -4.175 1.499 -1.270 ETKDGv3 30
CHD H12A -3.370 2.615 -0.139 ETKDGv3 31
CHD H21 -5.930 2.263 0.055 ETKDGv3 32
CHD H22 -4.971 2.314 1.557 ETKDGv3 33
CHD H3 -5.383 0.098 2.103 ETKDGv3 34
CHD HO3 -7.455 -0.384 1.599 ETKDGv3 35
CHD H41 -5.668 -0.563 -0.880 ETKDGv3 36
CHD H42 -5.695 -1.747 0.461 ETKDGv3 37
CHD H5 -3.411 -1.570 0.926 ETKDGv3 38
CHD H61 -3.889 -2.694 -1.208 ETKDGv3 39
CHD H62 -3.764 -1.151 -2.096 ETKDGv3 40
CHD H7 -1.591 -2.985 -1.059 ETKDGv3 41
CHD HO7 -1.935 -2.764 -3.222 ETKDGv3 42
CHD H8 -0.956 -1.317 0.340 ETKDGv3 43
CHD H9 -2.080 0.546 -1.778 ETKDGv3 44
CHD H111 -1.158 2.554 -0.177 ETKDGv3 45
CHD H112 -0.506 2.025 -1.715 ETKDGv3 46
CHD H12 0.600 1.675 1.056 ETKDGv3 47
CHD HO12 1.345 3.307 -0.168 ETKDGv3 48
CHD H14 0.407 -0.242 -2.164 ETKDGv3 49
CHD H151 1.123 -2.834 -0.752 ETKDGv3 50
CHD H152 1.014 -2.458 -2.516 ETKDGv3 51
CHD H161 3.146 -1.530 -2.541 ETKDGv3 52
CHD H162 3.354 -2.250 -0.915 ETKDGv3 53
CHD H17 2.610 0.556 -1.824 ETKDGv3 54
CHD H181 2.149 -0.121 1.838 ETKDGv3 55
CHD H182 0.456 -0.553 1.770 ETKDGv3 56
CHD H183 1.663 -1.723 1.169 ETKDGv3 57
CHD H191 -1.926 1.653 1.789 ETKDGv3 58
CHD H192 -3.297 0.701 2.387 ETKDGv3 59
CHD H193 -1.784 -0.121 2.010 ETKDGv3 60
CHD H20 3.691 1.243 0.462 ETKDGv3 61
CHD H211 5.933 1.272 -0.675 ETKDGv3 62
CHD H212 4.596 1.746 -1.756 ETKDGv3 63
CHD H213 5.312 0.093 -1.886 ETKDGv3 64
CHD H221 3.922 -1.467 1.071 ETKDGv3 65
CHD H222 5.452 -1.249 0.221 ETKDGv3 66
CHD H231 5.493 -0.956 2.748 ETKDGv3 67
CHD H232 4.442 0.481 2.596 ETKDGv3 68
CHD H26 7.159 2.693 1.769 ETKDGv3 69
#