data_CHP
#
_chem_comp.id CHP
_chem_comp.name 3-CHLORO-4-HYDROXYPHENYLGLYCINE
_chem_comp.type 'L-PEPTIDE LINKING'
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C8 H8 Cl N O3'
_chem_comp.mon_nstd_parent_comp_id GLY
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 201.607
_chem_comp.one_letter_code G
_chem_comp.three_letter_code CHP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1DSR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CHP N N N 0 1 N N N Y Y N 16.805 26.879 22.518 0.106 1.917 2.323 N CHP 1
CHP CA CA C 0 1 N N S Y N N 16.886 26.315 21.138 -0.537 0.611 2.123 CA CHP 2
CHP C C C 0 1 N N N Y N Y 15.521 25.644 20.735 0.302 -0.465 2.759 C CHP 3
CHP O O O 0 1 N N N Y N Y 15.248 25.344 19.571 1.501 -0.332 2.831 O CHP 4
CHP OXT OXT O 0 1 N Y N Y N Y 14.678 25.428 21.828 -0.280 -1.572 3.246 OXT CHP 5
CHP C1 C1 C 0 1 Y N N N N N 18.185 25.444 20.957 -0.672 0.338 0.647 C1 CHP 6
CHP C2 C2 C 0 1 Y N N N N N 18.209 24.195 20.314 0.455 0.285 -0.149 C2 CHP 7
CHP C3 C3 C 0 1 Y N N N N N 19.387 23.457 20.221 0.335 0.029 -1.503 C3 CHP 8
CHP CL3 CL3 CL 0 0 N N N N N N 19.396 21.874 19.456 1.752 -0.043 -2.503 CL3 CHP 9
CHP C4 C4 C 0 1 Y N N N N N 20.565 23.959 20.764 -0.920 -0.164 -2.061 C4 CHP 10
CHP O4 O4 O 0 1 N N N N N N 21.716 23.214 20.732 -1.042 -0.411 -3.393 O4 CHP 11
CHP C5 C5 C 0 1 Y N N N N N 20.570 25.197 21.389 -2.050 -0.105 -1.259 C5 CHP 12
CHP C6 C6 C 0 1 Y N N N N N 19.402 25.945 21.457 -1.924 0.145 0.092 C6 CHP 13
CHP H 1HN H 0 1 N N N Y Y N 17.043 26.302 23.335 1.013 1.863 1.883 H CHP 14
CHP H2 2HN H 0 1 N Y N Y Y N 16.512 26.177 23.197 -0.431 2.589 1.796 H2 CHP 15
CHP HA HA H 0 1 N N N Y N N 17.006 27.157 20.432 -1.526 0.620 2.583 HA CHP 16
CHP HXT HXT H 0 1 N Y N Y N Y 13.854 25.023 21.585 0.259 -2.263 3.654 HXT CHP 17
CHP HC2 H2 H 0 1 N N N N N N 17.304 23.780 19.904 1.432 0.436 0.285 HC2 CHP 18
CHP HO4 HO4 H 0 1 N N N N N N 21.523 22.366 20.324 -1.135 0.446 -3.829 HO4 CHP 19
CHP H5 H5 H 0 1 N N N N N N 21.450 25.549 21.901 -3.028 -0.256 -1.692 H5 CHP 20
CHP H6 H6 H 0 1 N N N N N N 19.419 26.882 21.998 -2.803 0.191 0.717 H6 CHP 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CHP N CA SING N N 1
CHP N H SING N N 2
CHP N H2 SING N N 3
CHP CA C SING N N 4
CHP CA C1 SING N N 5
CHP CA HA SING N N 6
CHP C O DOUB N N 7
CHP C OXT SING N N 8
CHP OXT HXT SING N N 9
CHP C1 C2 DOUB Y N 10
CHP C1 C6 SING Y N 11
CHP C2 C3 SING Y N 12
CHP C2 HC2 SING N N 13
CHP C3 CL3 SING N N 14
CHP C3 C4 DOUB Y N 15
CHP C4 O4 SING N N 16
CHP C4 C5 SING Y N 17
CHP O4 HO4 SING N N 18
CHP C5 C6 DOUB Y N 19
CHP C5 H5 SING N N 20
CHP C6 H6 SING N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CHP SMILES ACDLabs 10.04 'Clc1cc(ccc1O)C(C(=O)O)N'
CHP SMILES_CANONICAL CACTVS 3.341 'N[C@H](C(O)=O)c1ccc(O)c(Cl)c1'
CHP SMILES CACTVS 3.341 'N[CH](C(O)=O)c1ccc(O)c(Cl)c1'
CHP SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'c1cc(c(cc1[C@@H](C(=O)O)N)Cl)O'
CHP SMILES 'OpenEye OEToolkits' 1.5.0 'c1cc(c(cc1C(C(=O)O)N)Cl)O'
CHP InChI InChI 1.03 'InChI=1S/C8H8ClNO3/c9-5-3-4(1-2-6(5)11)7(10)8(12)13/h1-3,7,11H,10H2,(H,12,13)/t7-/m0/s1'
CHP InChIKey InChI 1.03 FLZDFFKRJPLFGS-ZETCQYMHSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CHP 'SYSTEMATIC NAME' ACDLabs 10.04 '(2S)-amino(3-chloro-4-hydroxyphenyl)ethanoic acid'
CHP 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '(2S)-2-amino-2-(3-chloro-4-hydroxy-phenyl)ethanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CHP 'Create component' 1999-07-08 RCSB
CHP 'Modify descriptor' 2011-06-04 RCSB
CHP 'Modify backbone' 2023-11-03 PDBE
CHP 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id CHP
_pdbx_chem_comp_pcm.modified_residue_id ?
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Non-standard residue'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 1DSR
#
_pdbe_chem_comp_drugbank_details.comp_id CHP
_pdbe_chem_comp_drugbank_details.drugbank_id DB03898
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 3-Chloro-4-Hydroxyphenylglycine
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CHP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03898
_pdbe_chem_comp_drugbank_classification.parent 'L-alpha-amino acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CHP N N 4.299 2.625 1
CHP CA C 5.598 1.875 2
CHP C C 6.897 2.625 3
CHP O O 6.897 4.125 4
CHP OXT O 8.196 1.875 5
CHP C1 C 5.598 0.375 6
CHP C2 C 4.299 -0.375 7
CHP C3 C 4.299 -1.875 8
CHP CL3 Cl 3.000 -2.625 9
CHP C4 C 5.598 -2.625 10
CHP O4 O 5.598 -4.125 11
CHP C5 C 6.897 -1.875 12
CHP C6 C 6.897 -0.375 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CHP CA N SINGLE BEGINDASH 1
CHP CA C SINGLE NONE 2
CHP CA C1 SINGLE NONE 3
CHP C O DOUBLE NONE 4
CHP C OXT SINGLE NONE 5
CHP C1 C2 DOUBLE NONE 6
CHP C1 C6 SINGLE NONE 7
CHP C2 C3 SINGLE NONE 8
CHP C3 CL3 SINGLE NONE 9
CHP C3 C4 DOUBLE NONE 10
CHP C4 O4 SINGLE NONE 11
CHP C4 C5 SINGLE NONE 12
CHP C5 C6 DOUBLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CHP MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
CHP peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
CHP phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CHP C1 S1 1
CHP C2 S1 1
CHP C3 S1 1
CHP C4 S1 1
CHP C5 S1 1
CHP C6 S1 1
CHP O F1 1
CHP C F1 1
CHP CA F1 1
CHP N F1 1
CHP C1 F2 1
CHP C2 F2 1
CHP C3 F2 1
CHP C4 F2 1
CHP C5 F2 1
CHP C6 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CHP
_pdbe_chem_comp_rdkit_properties.exactmw 201.019
_pdbe_chem_comp_rdkit_properties.amw 201.609
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.125
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 91.084
_pdbe_chem_comp_rdkit_properties.tpsa 83.550
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.613
_pdbe_chem_comp_rdkit_properties.CrippenMR 46.805
_pdbe_chem_comp_rdkit_properties.chi0v 6.806
_pdbe_chem_comp_rdkit_properties.chi1v 3.403
_pdbe_chem_comp_rdkit_properties.chi2v 1.431
_pdbe_chem_comp_rdkit_properties.chi3v 1.431
_pdbe_chem_comp_rdkit_properties.chi4v 0.734
_pdbe_chem_comp_rdkit_properties.chi0n 14.050
_pdbe_chem_comp_rdkit_properties.chi1n 6.736
_pdbe_chem_comp_rdkit_properties.chi2n 1.165
_pdbe_chem_comp_rdkit_properties.chi3n 1.165
_pdbe_chem_comp_rdkit_properties.chi4n 0.592
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.260
_pdbe_chem_comp_rdkit_properties.kappa1 3.475
_pdbe_chem_comp_rdkit_properties.kappa2 3.636
_pdbe_chem_comp_rdkit_properties.kappa3 2.105
_pdbe_chem_comp_rdkit_properties.Phi 0.972
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CHP UniChem DrugBank DB03898
CHP UniChem PDBe CHP
CHP UniChem ZINC ZINC000008377546
CHP UniChem eMolecules 36478384
CHP UniChem 'PubChem TPHARMA' 16496610
CHP UniChem 'Probes And Drugs' PD006672
CHP UniChem PubChem 11401421
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CHP N -2.177 0.072 -1.517 ETKDGv3 1
CHP CA -1.661 -0.470 -0.258 ETKDGv3 2
CHP C -2.344 0.184 0.909 ETKDGv3 3
CHP O -2.633 -0.496 1.930 ETKDGv3 4
CHP OXT -2.617 1.549 0.886 ETKDGv3 5
CHP C1 -0.167 -0.258 -0.158 ETKDGv3 6
CHP C2 0.387 0.946 -0.401 ETKDGv3 7
CHP C3 1.847 1.142 -0.273 ETKDGv3 8
CHP CL3 2.530 2.725 -0.611 ETKDGv3 9
CHP C4 2.632 0.117 0.098 ETKDGv3 10
CHP O4 4.009 0.295 0.220 ETKDGv3 11
CHP C5 2.029 -1.204 0.380 ETKDGv3 12
CHP C6 0.707 -1.382 0.262 ETKDGv3 13
CHP H -3.198 -0.152 -1.577 ETKDGv3 14
CHP H2 -1.720 -0.441 -2.306 ETKDGv3 15
CHP HA -1.883 -1.562 -0.230 ETKDGv3 16
CHP HXT -3.061 2.003 1.675 ETKDGv3 17
CHP HC2 -0.232 1.787 -0.691 ETKDGv3 18
CHP HO4 4.614 -0.467 0.500 ETKDGv3 19
CHP H5 2.657 -2.031 0.686 ETKDGv3 20
CHP H6 0.280 -2.354 0.476 ETKDGv3 21
#