data_CI9
#
_chem_comp.id CI9
_chem_comp.name
"N-({(1S)-5-[4-(13-{[2,4-BIS(DIHYDROXYAMINO)PHENYL]AMINO}-2,5,8,11-TETRAOXATRIDEC-1-YL)-1H-1,2,3-TRIAZOL-1-YL]-1-CARBOXYPENTYL}CARBAMOYL)-L-GLUTAMIC ACID"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H46 N8 O15"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-05-14
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 746.720
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CI9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2XEG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CI9 OAA OAA O 0 1 N N N N N N 13.702 48.558 40.576 14.612 -2.588 1.980 OAA CI9 1
CI9 CBN CBN C 0 1 N N N N N N 13.712 47.316 40.369 13.431 -3.184 1.750 CBN CI9 2
CI9 OAG OAG O 0 1 N N N N N N 12.915 46.745 39.587 13.110 -4.156 2.391 OAG CI9 3
CI9 CAZ CAZ C 0 1 N N N N N N 14.908 46.536 41.003 12.506 -2.639 0.692 CAZ CI9 4
CI9 CBB CBB C 0 1 N N N N N N 14.652 45.017 41.080 11.239 -3.495 0.634 CBB CI9 5
CI9 CBW CBW C 0 1 N N S N N N 15.946 44.276 41.502 10.300 -2.942 -0.440 CBW CI9 6
CI9 CBP CBP C 0 1 N N N N N N 16.930 44.446 40.311 9.109 -3.854 -0.584 CBP CI9 7
CI9 OAI OAI O 0 1 N N N N N N 16.818 43.646 39.335 9.285 -5.137 -0.936 OAI CI9 8
CI9 OAC OAC O 0 1 N N N N N N 17.807 45.358 40.327 7.995 -3.431 -0.381 OAC CI9 9
CI9 NBI NBI N 0 1 N N N N N N 16.594 44.895 42.682 9.846 -1.605 -0.051 NBI CI9 10
CI9 CBQ CBQ C 0 1 N N N N N N 17.844 44.501 43.028 9.450 -0.726 -0.993 CBQ CI9 11
CI9 OAD OAD O 0 1 N N N N N N 18.266 43.448 42.536 9.469 -1.044 -2.166 OAD CI9 12
CI9 N N N 0 1 N N N N N N 18.526 45.276 43.890 9.032 0.504 -0.635 N CI9 13
CI9 CA CA C 0 1 N N S N N N 19.849 44.891 44.368 8.602 1.459 -1.659 CA CI9 14
CI9 C C C 0 1 N N N N N N 20.103 45.592 45.695 9.804 2.184 -2.207 C CI9 15
CI9 OXT OXT O 0 1 N Y N N N N 19.542 46.703 45.865 10.907 1.929 -1.786 OXT CI9 16
CI9 O O O 0 1 N N N N N N 20.718 44.910 46.553 9.649 3.112 -3.164 O CI9 17
CI9 CB CB C 0 1 N N N N N N 20.678 45.580 43.305 7.635 2.470 -1.039 CB CI9 18
CI9 CAP CAP C 0 1 N N N N N N 22.183 45.315 43.358 6.360 1.750 -0.595 CAP CI9 19
CI9 CAQ CAQ C 0 1 N N N N N N 22.726 46.041 42.095 5.393 2.761 0.025 CAQ CI9 20
CI9 CBC CBC C 0 1 N N N N N N 24.174 45.714 41.846 4.118 2.042 0.469 CBC CI9 21
CI9 NBX NBX N 0 1 Y N N N N N 24.655 46.548 40.716 3.193 3.010 1.062 NBX CI9 22
CI9 CAO CAO C 0 1 Y N N N N N 24.867 47.862 40.747 1.912 3.220 0.679 CAO CI9 23
CI9 NBF NBF N 0 1 Y N N N N N 24.906 46.078 39.587 3.456 3.803 2.041 NBF CI9 24
CI9 NBE NBE N 0 1 Y N N N N N 25.290 46.964 38.810 2.427 4.524 2.318 NBE CI9 25
CI9 CBR CBR C 0 1 Y N N N N N 25.282 48.101 39.502 1.431 4.193 1.488 CBR CI9 26
CI9 CBD CBD C 0 1 N N N N N N 25.637 49.339 38.991 0.045 4.785 1.461 CBD CI9 27
CI9 OBM OBM O 0 1 N N N N N N 25.874 50.414 39.914 -0.720 4.159 0.430 OBM CI9 28
CI9 CAY CAY C 0 1 N N N N N N 24.972 51.477 39.648 -2.057 4.650 0.319 CAY CI9 29
CI9 CAX CAX C 0 1 N N N N N N 25.419 52.682 40.443 -2.780 3.912 -0.810 CAX CI9 30
CI9 OBL OBL O 0 1 N N N N N N 25.323 52.351 41.840 -2.912 2.531 -0.469 OBL CI9 31
CI9 CAW CAW C 0 1 N N N N N N 24.825 53.482 42.548 -3.577 1.748 -1.462 CAW CI9 32
CI9 CAV CAV C 0 1 N N N N N N 25.845 53.802 43.598 -3.661 0.294 -0.993 CAV CI9 33
CI9 OBK OBK O 0 1 N N N N N N 26.695 54.888 43.150 -4.490 0.215 0.168 OBK CI9 34
CI9 CAU CAU C 0 1 N N N N N N 27.812 55.036 44.071 -4.636 -1.107 0.689 CAU CI9 35
CI9 CAT CAT C 0 1 N N N N N N 27.341 55.132 45.546 -5.539 -1.071 1.924 CAT CI9 36
CI9 OBJ OBJ O 0 1 N N N N N N 28.209 54.410 46.438 -6.856 -0.669 1.540 OBJ CI9 37
CI9 CAS CAS C 0 1 N N N N N N 27.466 53.623 47.375 -7.783 -0.604 2.625 CAS CI9 38
CI9 CAR CAR C 0 1 N N N N N N 28.561 52.801 48.057 -9.152 -0.165 2.100 CAR CI9 39
CI9 NBG NBG N 0 1 N N N N N N 29.605 53.683 48.611 -9.681 -1.192 1.199 NBG CI9 40
CI9 CBT CBT C 0 1 Y N N N N N 30.917 53.703 48.308 -10.933 -1.014 0.590 CBT CI9 41
CI9 CAM CAM C 0 1 Y N N N N N 31.351 54.597 47.318 -11.668 0.134 0.840 CAM CI9 42
CI9 CAL CAL C 0 1 Y N N N N N 32.706 54.692 46.996 -12.902 0.311 0.240 CAL CI9 43
CI9 CBS CBS C 0 1 Y N N N N N 33.640 53.899 47.670 -13.407 -0.661 -0.614 CBS CI9 44
CI9 NBY NBY N 0 1 N N N N N N 34.955 53.956 47.379 -14.656 -0.479 -1.219 NBY CI9 45
CI9 OAJ OAJ O 0 1 N N N N N N 35.439 53.784 46.028 -15.403 0.696 -0.961 OAJ CI9 46
CI9 OAE OAE O 0 1 N N N N N N 35.921 54.139 48.428 -15.171 -1.469 -2.090 OAE CI9 47
CI9 CAN CAN C 0 1 Y N N N N N 33.205 53.024 48.667 -12.674 -1.812 -0.868 CAN CI9 48
CI9 CBU CBU C 0 1 Y N N N N N 31.856 52.909 49.006 -11.434 -1.988 -0.272 CBU CI9 49
CI9 NBZ NBZ N 0 1 N N N N N N 31.527 52.024 49.974 -10.691 -3.146 -0.530 NBZ CI9 50
CI9 OAK OAK O 0 1 N N N N N N 30.206 51.644 50.231 -11.015 -4.202 0.428 OAK CI9 51
CI9 OAF OAF O 0 1 N N N N N N 32.528 51.392 50.744 -10.895 -3.605 -1.905 OAF CI9 52
CI9 HAA HAA H 0 1 N N N N N N 13.015 48.960 40.057 15.171 -2.973 2.668 HAA CI9 53
CI9 HAZ1 HAZ1 H 0 0 N N N N N N 15.802 46.707 40.385 12.239 -1.611 0.938 HAZ1 CI9 54
CI9 HAZ2 HAZ2 H 0 0 N N N N N N 15.041 46.905 42.030 13.006 -2.663 -0.275 HAZ2 CI9 55
CI9 HBB1 HBB1 H 0 0 N N N N N N 13.864 44.820 41.821 11.506 -4.523 0.389 HBB1 CI9 56
CI9 HBB2 HBB2 H 0 0 N N N N N N 14.338 44.655 40.090 10.739 -3.470 1.602 HBB2 CI9 57
CI9 HBW HBW H 0 1 N N N N N N 15.702 43.233 41.753 10.829 -2.884 -1.391 HBW CI9 58
CI9 HBI HBI H 0 1 N N N N N N 16.116 45.593 43.215 9.831 -1.351 0.886 HBI CI9 59
CI9 HAI HAI H 0 1 N N N N N N 17.471 43.855 38.677 8.491 -5.684 -1.016 HAI CI9 60
CI9 H H H 0 1 N N N N N N 18.119 46.132 44.209 9.017 0.757 0.302 H CI9 61
CI9 HA HA H 0 1 N N N N N N 20.025 43.815 44.512 8.100 0.924 -2.466 HA CI9 62
CI9 HB1C HB1C H 0 0 N N N N N N 20.316 45.229 42.327 8.106 2.941 -0.177 HB1C CI9 63
CI9 HB2C HB2C H 0 0 N N N N N N 20.555 46.659 43.478 7.384 3.232 -1.777 HB2C CI9 64
CI9 HXT HXT H 0 1 N Y N N N N 20.704 45.363 47.388 10.449 3.550 -3.484 HB CI9 65
CI9 HAP1 HAP1 H 0 0 N N N N N N 22.631 45.718 44.278 5.889 1.279 -1.458 HAP1 CI9 66
CI9 HAP2 HAP2 H 0 0 N N N N N N 22.426 44.242 43.369 6.611 0.988 0.143 HAP2 CI9 67
CI9 HAQ1 HAQ1 H 0 0 N N N N N N 22.136 45.722 41.223 5.864 3.233 0.887 HAQ1 CI9 68
CI9 HAQ2 HAQ2 H 0 0 N N N N N N 22.641 47.126 42.257 5.142 3.523 -0.713 HAQ2 CI9 69
CI9 HBC1 HBC1 H 0 0 N N N N N N 24.766 45.930 42.748 3.647 1.571 -0.394 HBC1 CI9 70
CI9 HBC2 HBC2 H 0 0 N N N N N N 24.283 44.647 41.601 4.369 1.280 1.207 HBC2 CI9 71
CI9 HAO HAO H 0 1 N N N N N N 24.737 48.554 41.566 1.380 2.714 -0.113 HAO CI9 72
CI9 HBD1 HBD1 H 0 0 N N N N N N 26.573 49.192 38.432 -0.439 4.621 2.424 HBD1 CI9 73
CI9 HBD2 HBD2 H 0 0 N N N N N N 24.760 49.661 38.410 0.111 5.855 1.266 HBD2 CI9 74
CI9 HAY1 HAY1 H 0 0 N N N N N N 24.977 51.713 38.574 -2.585 4.483 1.258 HAY1 CI9 75
CI9 HAY2 HAY2 H 0 0 N N N N N N 23.950 51.190 39.935 -2.035 5.718 0.100 HAY2 CI9 76
CI9 HAX1 HAX1 H 0 0 N N N N N N 26.458 52.937 40.187 -3.769 4.347 -0.954 HAX1 CI9 77
CI9 HAX2 HAX2 H 0 0 N N N N N N 24.784 53.550 40.211 -2.205 4.006 -1.731 HAX2 CI9 78
CI9 HAW1 HAW1 H 0 0 N N N N N N 24.691 54.335 41.867 -4.582 2.138 -1.619 HAW1 CI9 79
CI9 HAW2 HAW2 H 0 0 N N N N N N 23.843 53.271 42.997 -3.018 1.796 -2.397 HAW2 CI9 80
CI9 HAV1 HAV1 H 0 0 N N N N N N 25.332 54.101 44.524 -4.087 -0.319 -1.787 HAV1 CI9 81
CI9 HAV2 HAV2 H 0 0 N N N N N N 26.464 52.912 43.783 -2.662 -0.068 -0.751 HAV2 CI9 82
CI9 HAU1 HAU1 H 0 0 N N N N N N 28.470 54.161 43.969 -5.083 -1.750 -0.069 HAU1 CI9 83
CI9 HAU2 HAU2 H 0 0 N N N N N N 28.339 55.968 43.820 -3.657 -1.498 0.966 HAU2 CI9 84
CI9 HAT1 HAT1 H 0 0 N N N N N N 27.333 56.191 45.844 -5.579 -2.063 2.374 HAT1 CI9 85
CI9 HAT2 HAT2 H 0 0 N N N N N N 26.337 54.687 45.613 -5.139 -0.361 2.647 HAT2 CI9 86
CI9 HAS1 HAS1 H 0 0 N N N N N N 26.917 54.250 48.093 -7.870 -1.586 3.089 HAS1 CI9 87
CI9 HAS2 HAS2 H 0 0 N N N N N N 26.686 53.006 46.905 -7.429 0.117 3.362 HAS2 CI9 88
CI9 HAR1 HAR1 H 0 0 N N N N N N 28.115 52.215 48.874 -9.836 -0.029 2.938 HAR1 CI9 89
CI9 HAR2 HAR2 H 0 0 N N N N N N 29.019 52.133 47.312 -9.049 0.775 1.558 HAR2 CI9 90
CI9 HBG HBG H 0 1 N N N N N N 29.292 54.602 48.371 -9.167 -1.996 1.024 HBG CI9 91
CI9 HAM HAM H 0 1 N N N N N N 30.632 55.216 46.802 -11.278 0.891 1.503 HAM CI9 92
CI9 HAL HAL H 0 1 N N N N N N 33.032 55.377 46.227 -13.473 1.206 0.436 HAL CI9 93
CI9 HAN HAN H 0 1 N N N N N N 33.932 52.420 49.190 -13.067 -2.568 -1.532 HAN CI9 94
CI9 HAE HAE H 0 1 N N N N N N 36.793 54.179 48.053 -16.039 -1.255 -2.460 HAE CI9 95
CI9 HAJ HAJ H 0 1 N N N N N N 34.702 53.746 45.430 -16.252 0.731 -1.423 HAJ CI9 96
CI9 HAK HAK H 0 1 N N N N N N 30.077 51.558 51.168 -10.524 -5.024 0.289 HAK CI9 97
CI9 HAF HAF H 0 1 N N N N N N 33.299 51.250 50.207 -10.400 -4.404 -2.130 HAF CI9 98
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CI9 OAA CBN SING N N 1
CI9 CBN OAG DOUB N N 2
CI9 CBN CAZ SING N N 3
CI9 CAZ CBB SING N N 4
CI9 CBB CBW SING N N 5
CI9 CBW CBP SING N N 6
CI9 CBW NBI SING N N 7
CI9 CBP OAI SING N N 8
CI9 CBP OAC DOUB N N 9
CI9 NBI CBQ SING N N 10
CI9 CBQ OAD DOUB N N 11
CI9 CBQ N SING N N 12
CI9 N CA SING N N 13
CI9 CA C SING N N 14
CI9 CA CB SING N N 15
CI9 C O DOUB N N 16
CI9 C OXT SING N N 17
CI9 CB CAP SING N N 18
CI9 CAP CAQ SING N N 19
CI9 CAQ CBC SING N N 20
CI9 CBC NBX SING N N 21
CI9 NBX CAO SING Y N 22
CI9 NBX NBF SING Y N 23
CI9 CAO CBR DOUB Y N 24
CI9 NBF NBE DOUB Y N 25
CI9 NBE CBR SING Y N 26
CI9 CBR CBD SING N N 27
CI9 CBD OBM SING N N 28
CI9 OBM CAY SING N N 29
CI9 CAY CAX SING N N 30
CI9 CAX OBL SING N N 31
CI9 OBL CAW SING N N 32
CI9 CAW CAV SING N N 33
CI9 CAV OBK SING N N 34
CI9 OBK CAU SING N N 35
CI9 CAU CAT SING N N 36
CI9 CAT OBJ SING N N 37
CI9 OBJ CAS SING N N 38
CI9 CAS CAR SING N N 39
CI9 CAR NBG SING N N 40
CI9 NBG CBT SING N N 41
CI9 CBT CAM SING Y N 42
CI9 CBT CBU DOUB Y N 43
CI9 CAM CAL DOUB Y N 44
CI9 CAL CBS SING Y N 45
CI9 CBS NBY SING N N 46
CI9 CBS CAN DOUB Y N 47
CI9 NBY OAJ SING N N 48
CI9 NBY OAE SING N N 49
CI9 CAN CBU SING Y N 50
CI9 CBU NBZ SING N N 51
CI9 NBZ OAK SING N N 52
CI9 NBZ OAF SING N N 53
CI9 OAA HAA SING N N 54
CI9 CAZ HAZ1 SING N N 55
CI9 CAZ HAZ2 SING N N 56
CI9 CBB HBB1 SING N N 57
CI9 CBB HBB2 SING N N 58
CI9 CBW HBW SING N N 59
CI9 NBI HBI SING N N 60
CI9 OAI HAI SING N N 61
CI9 N H SING N N 62
CI9 CA HA SING N N 63
CI9 CB HB1C SING N N 64
CI9 CB HB2C SING N N 65
CI9 OXT HXT SING N N 66
CI9 CAP HAP1 SING N N 67
CI9 CAP HAP2 SING N N 68
CI9 CAQ HAQ1 SING N N 69
CI9 CAQ HAQ2 SING N N 70
CI9 CBC HBC1 SING N N 71
CI9 CBC HBC2 SING N N 72
CI9 CAO HAO SING N N 73
CI9 CBD HBD1 SING N N 74
CI9 CBD HBD2 SING N N 75
CI9 CAY HAY1 SING N N 76
CI9 CAY HAY2 SING N N 77
CI9 CAX HAX1 SING N N 78
CI9 CAX HAX2 SING N N 79
CI9 CAW HAW1 SING N N 80
CI9 CAW HAW2 SING N N 81
CI9 CAV HAV1 SING N N 82
CI9 CAV HAV2 SING N N 83
CI9 CAU HAU1 SING N N 84
CI9 CAU HAU2 SING N N 85
CI9 CAT HAT1 SING N N 86
CI9 CAT HAT2 SING N N 87
CI9 CAS HAS1 SING N N 88
CI9 CAS HAS2 SING N N 89
CI9 CAR HAR1 SING N N 90
CI9 CAR HAR2 SING N N 91
CI9 NBG HBG SING N N 92
CI9 CAM HAM SING N N 93
CI9 CAL HAL SING N N 94
CI9 CAN HAN SING N N 95
CI9 OAE HAE SING N N 96
CI9 OAJ HAJ SING N N 97
CI9 OAK HAK SING N N 98
CI9 OAF HAF SING N N 99
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CI9 SMILES ACDLabs 10.04 O=C(O)C(NC(=O)NC(C(=O)O)CCCCn1nnc(c1)COCCOCCOCCOCCNc2ccc(N(O)O)cc2N(O)O)CCC(=O)O
CI9 SMILES_CANONICAL CACTVS 3.352 ON(O)c1ccc(NCCOCCOCCOCCOCc2cn(CCCC[C@H](NC(=O)N[C@@H](CCC(O)=O)C(O)=O)C(O)=O)nn2)c(c1)N(O)O
CI9 SMILES CACTVS 3.352 ON(O)c1ccc(NCCOCCOCCOCCOCc2cn(CCCC[CH](NC(=O)N[CH](CCC(O)=O)C(O)=O)C(O)=O)nn2)c(c1)N(O)O
CI9 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 c1cc(c(cc1N(O)O)N(O)O)NCCOCCOCCOCCOCc2cn(nn2)CCCC[C@@H](C(=O)O)NC(=O)N[C@@H](CCC(=O)O)C(=O)O
CI9 SMILES "OpenEye OEToolkits" 1.6.1 c1cc(c(cc1N(O)O)N(O)O)NCCOCCOCCOCCOCc2cn(nn2)CCCCC(C(=O)O)NC(=O)NC(CCC(=O)O)C(=O)O
CI9 InChI InChI 1.03 InChI=1S/C29H46N8O15/c38-26(39)7-6-24(28(42)43)32-29(44)31-23(27(40)41)3-1-2-9-35-18-20(33-34-35)19-52-16-15-51-14-13-50-12-11-49-10-8-30-22-5-4-21(36(45)46)17-25(22)37(47)48/h4-5,17-18,23-24,30,45-48H,1-3,6-16,19H2,(H,38,39)(H,40,41)(H,42,43)(H2,31,32,44)/t23-,24-/m0/s1
CI9 InChIKey InChI 1.03 OGVHLQGCHPCUQO-ZEQRLZLVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CI9 "SYSTEMATIC NAME" ACDLabs 10.04 "N-({(1S)-5-[4-(13-{[2,4-bis(dihydroxyamino)phenyl]amino}-2,5,8,11-tetraoxatridec-1-yl)-1H-1,2,3-triazol-1-yl]-1-carboxypentyl}carbamoyl)-L-glutamic acid"
CI9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-2-[[(2S)-6-[4-[2-[2-[2-[2-[[2,4-bis(dihydroxyamino)phenyl]amino]ethoxy]ethoxy]ethoxy]ethoxymethyl]-1,2,3-triazol-1-yl]-1-hydroxy-1-oxo-hexan-2-yl]carbamoylamino]pentanedioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CI9 'Create component' 2010-05-14 EBI
CI9 'Modify aromatic_flag' 2011-06-04 RCSB
CI9 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CI9 OAA O 6.570 9.331 1
CI9 CBN C 7.180 7.961 2
CI9 OAG O 8.672 7.804 3
CI9 CAZ C 6.298 6.747 4
CI9 CBB C 6.908 5.377 5
CI9 CBW C 6.027 4.164 6
CI9 CBP C 4.535 4.321 7
CI9 OAI O 3.925 5.691 8
CI9 OAC O 3.653 3.107 9
CI9 NBI N 6.637 2.793 10
CI9 CBQ C 8.129 2.637 11
CI9 OAD O 9.010 3.850 12
CI9 N N 8.739 1.266 13
CI9 CA C 10.231 1.109 14
CI9 C C 11.112 2.323 15
CI9 OXT O 10.502 3.693 16
CI9 O O 12.604 2.166 17
CI9 CB C 10.841 -0.261 18
CI9 CAP C 12.332 -0.418 19
CI9 CAQ C 12.943 -1.788 20
CI9 CBC C 14.434 -1.945 21
CI9 NBX N 15.044 -3.315 22
CI9 CAO C 16.512 -3.627 23
CI9 NBF N 14.294 -4.614 24
CI9 NBE N 15.298 -5.729 25
CI9 CBR C 16.668 -5.119 26
CI9 CBD C 17.967 -5.869 27
CI9 OBM O 19.267 -5.119 28
CI9 CAY C 20.566 -5.869 29
CI9 CAX C 21.865 -5.119 30
CI9 OBL O 23.164 -5.869 31
CI9 CAW C 24.463 -5.119 32
CI9 CAV C 25.762 -5.869 33
CI9 OBK O 27.061 -5.119 34
CI9 CAU C 28.360 -5.869 35
CI9 CAT C 29.659 -5.119 36
CI9 OBJ O 30.958 -5.869 37
CI9 CAS C 32.257 -5.119 38
CI9 CAR C 33.556 -5.869 39
CI9 NBG N 34.855 -5.119 40
CI9 CBT C 36.154 -5.869 41
CI9 CAM C 36.154 -7.369 42
CI9 CAL C 37.453 -8.119 43
CI9 CBS C 38.752 -7.369 44
CI9 NBY N 40.051 -8.119 45
CI9 OAJ O 40.051 -9.619 46
CI9 OAE O 41.350 -7.369 47
CI9 CAN C 38.752 -5.869 48
CI9 CBU C 37.453 -5.119 49
CI9 NBZ N 37.453 -3.619 50
CI9 OAK O 38.752 -2.869 51
CI9 OAF O 36.154 -2.869 52
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CI9 OAA CBN SINGLE NONE 1
CI9 CBN OAG DOUBLE NONE 2
CI9 CBN CAZ SINGLE NONE 3
CI9 CAZ CBB SINGLE NONE 4
CI9 CBW CBB SINGLE BEGINDASH 5
CI9 CBW CBP SINGLE NONE 6
CI9 CBW NBI SINGLE NONE 7
CI9 CBP OAI SINGLE NONE 8
CI9 CBP OAC DOUBLE NONE 9
CI9 NBI CBQ SINGLE NONE 10
CI9 CBQ OAD DOUBLE NONE 11
CI9 CBQ N SINGLE NONE 12
CI9 N CA SINGLE NONE 13
CI9 CA C SINGLE NONE 14
CI9 CA CB SINGLE BEGINDASH 15
CI9 C O DOUBLE NONE 16
CI9 C OXT SINGLE NONE 17
CI9 CB CAP SINGLE NONE 18
CI9 CAP CAQ SINGLE NONE 19
CI9 CAQ CBC SINGLE NONE 20
CI9 CBC NBX SINGLE NONE 21
CI9 NBX CAO SINGLE NONE 22
CI9 NBX NBF SINGLE NONE 23
CI9 CAO CBR DOUBLE NONE 24
CI9 NBF NBE DOUBLE NONE 25
CI9 NBE CBR SINGLE NONE 26
CI9 CBR CBD SINGLE NONE 27
CI9 CBD OBM SINGLE NONE 28
CI9 OBM CAY SINGLE NONE 29
CI9 CAY CAX SINGLE NONE 30
CI9 CAX OBL SINGLE NONE 31
CI9 OBL CAW SINGLE NONE 32
CI9 CAW CAV SINGLE NONE 33
CI9 CAV OBK SINGLE NONE 34
CI9 OBK CAU SINGLE NONE 35
CI9 CAU CAT SINGLE NONE 36
CI9 CAT OBJ SINGLE NONE 37
CI9 OBJ CAS SINGLE NONE 38
CI9 CAS CAR SINGLE NONE 39
CI9 CAR NBG SINGLE NONE 40
CI9 NBG CBT SINGLE NONE 41
CI9 CBT CAM DOUBLE NONE 42
CI9 CBT CBU SINGLE NONE 43
CI9 CAM CAL SINGLE NONE 44
CI9 CAL CBS DOUBLE NONE 45
CI9 CBS NBY SINGLE NONE 46
CI9 CBS CAN SINGLE NONE 47
CI9 NBY OAJ SINGLE NONE 48
CI9 NBY OAE SINGLE NONE 49
CI9 CAN CBU DOUBLE NONE 50
CI9 CBU NBZ SINGLE NONE 51
CI9 NBZ OAK SINGLE NONE 52
CI9 NBZ OAF SINGLE NONE 53
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CI9 MurckoScaffold S1 scaffold 'c1ccc(NCCOCCOCCOCCOCc2c[nH]nn2)cc1' InChI=1S/C17H26N4O4/c1-2-4-16(5-3-1)18-6-7-22-8-9-23-10-11-24-12-13-25-15-17-14-19-21-20-17/h1-5,14,18H,6-13,15H2,(H,19,20,21) AOVAGTLVRWAJRJ-UHFFFAOYSA-N
CI9 peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
CI9 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CI9 NBX S1 1
CI9 CAO S1 1
CI9 NBF S1 1
CI9 NBE S1 1
CI9 CBR S1 1
CI9 CBD S1 1
CI9 OBM S1 1
CI9 CAY S1 1
CI9 CAX S1 1
CI9 OBL S1 1
CI9 CAW S1 1
CI9 CAV S1 1
CI9 OBK S1 1
CI9 CAU S1 1
CI9 CAT S1 1
CI9 OBJ S1 1
CI9 CAS S1 1
CI9 CAR S1 1
CI9 NBG S1 1
CI9 CBT S1 1
CI9 CAM S1 1
CI9 CAL S1 1
CI9 CBS S1 1
CI9 CAN S1 1
CI9 CBU S1 1
CI9 OAC F1 1
CI9 CBP F1 1
CI9 CBW F1 1
CI9 NBI F1 1
CI9 O F1 2
CI9 C F1 2
CI9 CA F1 2
CI9 N F1 2
CI9 CBT F2 1
CI9 CAM F2 1
CI9 CAL F2 1
CI9 CBS F2 1
CI9 CAN F2 1
CI9 CBU F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CI9
_pdbe_chem_comp_rdkit_properties.exactmw 746.308
_pdbe_chem_comp_rdkit_properties.amw 746.728
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 23
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 10
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 33
_pdbe_chem_comp_rdkit_properties.NumHBD 10
_pdbe_chem_comp_rdkit_properties.NumHBA 21
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 52
_pdbe_chem_comp_rdkit_properties.NumAtoms 98
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 23
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.586
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 362.002
_pdbe_chem_comp_rdkit_properties.tpsa 320.090
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.830
_pdbe_chem_comp_rdkit_properties.CrippenMR 171.668
_pdbe_chem_comp_rdkit_properties.chi0v 24.201
_pdbe_chem_comp_rdkit_properties.chi1v 11.902
_pdbe_chem_comp_rdkit_properties.chi2v 3.905
_pdbe_chem_comp_rdkit_properties.chi3v 3.905
_pdbe_chem_comp_rdkit_properties.chi4v 2.137
_pdbe_chem_comp_rdkit_properties.chi0n 70.201
_pdbe_chem_comp_rdkit_properties.chi1n 34.101
_pdbe_chem_comp_rdkit_properties.chi2n 3.905
_pdbe_chem_comp_rdkit_properties.chi3n 3.905
_pdbe_chem_comp_rdkit_properties.chi4n 2.137
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.880
_pdbe_chem_comp_rdkit_properties.kappa1 11.314
_pdbe_chem_comp_rdkit_properties.kappa2 24.331
_pdbe_chem_comp_rdkit_properties.kappa3 17.863
_pdbe_chem_comp_rdkit_properties.Phi 5.294
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CI9 UniChem PDBe CI9
CI9 UniChem PubChem 49866793
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CI9 OAA -15.625 -2.324 3.712 ETKDGv3 1
CI9 CBN -14.860 -3.432 4.063 ETKDGv3 2
CI9 OAG -15.024 -3.980 5.185 ETKDGv3 3
CI9 CAZ -13.836 -3.966 3.109 ETKDGv3 4
CI9 CBB -12.397 -3.718 3.593 ETKDGv3 5
CI9 CBW -11.932 -2.256 3.426 ETKDGv3 6
CI9 CBP -12.598 -1.340 4.416 ETKDGv3 7
CI9 OAI -12.541 -1.621 5.778 ETKDGv3 8
CI9 OAC -13.188 -0.301 4.015 ETKDGv3 9
CI9 NBI -10.479 -2.180 3.601 ETKDGv3 10
CI9 CBQ -9.560 -2.403 2.523 ETKDGv3 11
CI9 OAD -9.991 -2.618 1.356 ETKDGv3 12
CI9 N -8.148 -2.382 2.776 ETKDGv3 13
CI9 CA -7.156 -2.536 1.708 ETKDGv3 14
CI9 C -5.884 -3.102 2.281 ETKDGv3 15
CI9 OXT -5.146 -2.368 3.205 ETKDGv3 16
CI9 O -5.488 -4.246 1.930 ETKDGv3 17
CI9 CB -6.909 -1.177 1.029 ETKDGv3 18
CI9 CAP -6.010 -1.302 -0.210 ETKDGv3 19
CI9 CAQ -5.805 0.063 -0.881 ETKDGv3 20
CI9 CBC -4.969 -0.040 -2.163 ETKDGv3 21
CI9 NBX -3.611 -0.488 -1.875 ETKDGv3 22
CI9 CAO -2.606 0.229 -1.179 ETKDGv3 23
CI9 NBF -3.181 -1.817 -1.926 ETKDGv3 24
CI9 NBE -2.045 -1.938 -1.367 ETKDGv3 25
CI9 CBR -1.663 -0.650 -0.882 ETKDGv3 26
CI9 CBD -0.385 -0.361 -0.157 ETKDGv3 27
CI9 OBM 0.449 0.473 -0.940 ETKDGv3 28
CI9 CAY 1.240 -0.287 -1.836 ETKDGv3 29
CI9 CAX 2.616 -0.577 -1.228 ETKDGv3 30
CI9 OBL 3.242 0.621 -0.807 ETKDGv3 31
CI9 CAW 4.008 1.204 -1.847 ETKDGv3 32
CI9 CAV 5.501 0.987 -1.589 ETKDGv3 33
CI9 OBK 5.827 -0.391 -1.588 ETKDGv3 34
CI9 CAU 6.083 -0.868 -2.898 ETKDGv3 35
CI9 CAT 7.572 -1.150 -3.076 ETKDGv3 36
CI9 OBJ 8.297 0.060 -3.007 ETKDGv3 37
CI9 CAS 9.651 -0.186 -3.327 ETKDGv3 38
CI9 CAR 10.453 1.106 -3.182 ETKDGv3 39
CI9 NBG 10.482 1.559 -1.789 ETKDGv3 40
CI9 CBT 10.957 2.861 -1.401 ETKDGv3 41
CI9 CAM 11.943 3.461 -2.095 ETKDGv3 42
CI9 CAL 12.546 4.719 -1.618 ETKDGv3 43
CI9 CBS 12.132 5.283 -0.472 ETKDGv3 44
CI9 NBY 12.732 6.499 0.011 ETKDGv3 45
CI9 OAJ 12.284 7.079 1.151 ETKDGv3 46
CI9 OAE 13.756 7.084 -0.659 ETKDGv3 47
CI9 CAN 11.024 4.647 0.282 ETKDGv3 48
CI9 CBU 10.439 3.516 -0.159 ETKDGv3 49
CI9 NBZ 9.276 3.013 0.526 ETKDGv3 50
CI9 OAK 8.240 2.490 -0.175 ETKDGv3 51
CI9 OAF 9.109 3.252 1.850 ETKDGv3 52
CI9 HAA -16.315 -1.946 4.350 ETKDGv3 53
CI9 HAZ1 -13.995 -5.062 3.007 ETKDGv3 54
CI9 HAZ2 -13.985 -3.518 2.103 ETKDGv3 55
CI9 HBB1 -11.731 -4.365 2.982 ETKDGv3 56
CI9 HBB2 -12.280 -4.049 4.649 ETKDGv3 57
CI9 HBW -12.193 -1.909 2.400 ETKDGv3 58
CI9 HBI -10.090 -2.087 4.567 ETKDGv3 59
CI9 HAI -12.982 -1.009 6.454 ETKDGv3 60
CI9 H -7.824 -2.140 3.740 ETKDGv3 61
CI9 HA -7.546 -3.252 0.950 ETKDGv3 62
CI9 HB1C -7.888 -0.752 0.715 ETKDGv3 63
CI9 HB2C -6.452 -0.469 1.756 ETKDGv3 64
CI9 HXT -4.288 -2.739 3.597 ETKDGv3 65
CI9 HAP1 -6.477 -2.004 -0.936 ETKDGv3 66
CI9 HAP2 -5.023 -1.711 0.094 ETKDGv3 67
CI9 HAQ1 -6.796 0.493 -1.146 ETKDGv3 68
CI9 HAQ2 -5.309 0.761 -0.172 ETKDGv3 69
CI9 HBC1 -4.924 0.960 -2.646 ETKDGv3 70
CI9 HBC2 -5.451 -0.741 -2.879 ETKDGv3 71
CI9 HAO -2.626 1.283 -0.931 ETKDGv3 72
CI9 HBD1 -0.629 0.177 0.782 ETKDGv3 73
CI9 HBD2 0.113 -1.310 0.146 ETKDGv3 74
CI9 HAY1 1.376 0.310 -2.762 ETKDGv3 75
CI9 HAY2 0.757 -1.241 -2.155 ETKDGv3 76
CI9 HAX1 2.481 -1.223 -0.336 ETKDGv3 77
CI9 HAX2 3.235 -1.167 -1.941 ETKDGv3 78
CI9 HAW1 3.733 0.859 -2.871 ETKDGv3 79
CI9 HAW2 3.816 2.298 -1.835 ETKDGv3 80
CI9 HAV1 6.114 1.572 -2.314 ETKDGv3 81
CI9 HAV2 5.739 1.394 -0.584 ETKDGv3 82
CI9 HAU1 5.730 -0.195 -3.715 ETKDGv3 83
CI9 HAU2 5.534 -1.825 -3.025 ETKDGv3 84
CI9 HAT1 7.902 -1.847 -2.272 ETKDGv3 85
CI9 HAT2 7.707 -1.644 -4.066 ETKDGv3 86
CI9 HAS1 10.091 -0.959 -2.656 ETKDGv3 87
CI9 HAS2 9.742 -0.528 -4.383 ETKDGv3 88
CI9 HAR1 9.995 1.892 -3.821 ETKDGv3 89
CI9 HAR2 11.491 0.920 -3.531 ETKDGv3 90
CI9 HBG 10.161 0.907 -1.040 ETKDGv3 91
CI9 HAM 12.358 3.008 -2.984 ETKDGv3 92
CI9 HAL 13.344 5.161 -2.200 ETKDGv3 93
CI9 HAN 10.647 5.137 1.170 ETKDGv3 94
CI9 HAE 14.576 6.692 -0.264 ETKDGv3 95
CI9 HAJ 11.581 7.713 0.855 ETKDGv3 96
CI9 HAK 8.289 1.513 -0.021 ETKDGv3 97
CI9 HAF 9.467 2.445 2.300 ETKDGv3 98
#