data_CIB
#
_chem_comp.id CIB
_chem_comp.name "2-ACETYLAMINO-4-METHYL-PENTANOIC ACID [1-(1-FORMYL-PENTYLCARBAMOYL)-3-METHYL-BUTYL]-AMIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H37 N3 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "CALPAIN IHIBITOR I"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-01-22
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 383.525
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CIB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1J2Q
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CIB N1 N1 N 0 1 N N N N N N 120.079 22.498 92.551 -0.240 0.752 -4.048 N1 CIB 1
CIB CA1 CA1 C 0 1 N N S N N N 121.279 23.097 91.958 -0.158 -0.344 -3.081 CA1 CIB 2
CIB C1 C1 C 0 1 N N N N N N 122.482 22.645 92.769 -0.283 0.206 -1.684 C1 CIB 3
CIB O1 O1 O 0 1 N N N N N N 122.486 22.814 93.999 0.107 1.328 -1.437 O1 CIB 4
CIB CB1 CB1 C 0 1 N N N N N N 121.280 24.649 92.017 1.188 -1.056 -3.230 CB1 CIB 5
CIB CG1 CG1 C 0 1 N N N N N N 120.203 25.396 91.215 1.315 -1.615 -4.648 CG1 CIB 6
CIB CD1 CD1 C 0 1 N N N N N N 120.438 26.917 91.497 2.661 -2.326 -4.797 CD1 CIB 7
CIB CD2 CD2 C 0 1 N N N N N N 120.399 25.161 89.681 0.181 -2.609 -4.908 CD2 CIB 8
CIB C10 C10 C 0 1 N N N N N N 119.848 21.127 92.535 0.662 1.753 -4.010 C10 CIB 9
CIB C25 C25 C 0 1 N N N N N N 118.579 20.599 93.181 0.578 2.881 -5.005 C25 CIB 10
CIB O28 O28 O 0 1 N N N N N N 120.616 20.319 92.029 1.542 1.744 -3.176 O28 CIB 11
CIB N2 N2 N 0 1 N N N N N N 123.504 22.091 92.059 -0.828 -0.546 -0.708 N2 CIB 12
CIB CA2 CA2 C 0 1 N N S N N N 124.718 21.644 92.703 -0.995 0.006 0.637 CA2 CIB 13
CIB C2 C2 C 0 1 N N N N N N 125.907 22.404 92.118 -0.193 -0.808 1.618 C2 CIB 14
CIB O2 O2 O 0 1 N N N N N N 125.891 22.818 90.937 0.454 -1.758 1.231 O2 CIB 15
CIB CB2 CB2 C 0 1 N N N N N N 124.972 20.076 92.531 -2.474 -0.037 1.027 CB2 CIB 16
CIB CG2 CG2 C 0 1 N N N N N N 123.907 19.067 93.116 -3.270 0.895 0.112 CG2 CIB 17
CIB CD3 CD3 C 0 1 N N N N N N 124.371 17.593 92.835 -4.760 0.787 0.446 CD3 CIB 18
CIB CD4 CD4 C 0 1 N N N N N N 123.741 19.229 94.678 -2.804 2.336 0.324 CD4 CIB 19
CIB N3 N3 N 0 1 N N N N N N 126.942 22.543 93.003 -0.195 -0.482 2.926 N3 CIB 20
CIB CA3 CA3 C 0 1 N N S N N N 128.248 23.172 92.805 0.585 -1.274 3.880 CA3 CIB 21
CIB C3 C3 C 0 1 N N N N N N 129.209 22.017 92.838 -0.266 -2.395 4.417 C3 CIB 22
CIB O3 O3 O 0 1 N N N N N N 128.852 20.819 92.999 -1.407 -2.519 4.042 O3 CIB 23
CIB CB3 CB3 C 0 1 N N N N N N 128.639 24.051 94.004 1.038 -0.380 5.035 CB3 CIB 24
CIB CG3 CG3 C 0 1 N N N N N N 127.831 25.330 94.189 1.903 0.758 4.490 CG3 CIB 25
CIB CE3 CE3 C 0 1 N N N N N N 127.494 27.599 93.097 3.222 2.790 5.099 CE3 CIB 26
CIB C19 C19 C 0 1 N N N N N N 128.513 26.568 93.583 2.357 1.652 5.645 C19 CIB 27
CIB HN1 HN1 H 0 1 N N N N N N 119.363 23.068 93.001 -0.944 0.759 -4.715 HN1 CIB 28
CIB HA1 HA1 H 0 1 N N N N N N 121.307 22.776 90.890 -0.965 -1.052 -3.266 HA1 CIB 29
CIB HB11 1HB1 H 0 0 N N N N N N 121.237 24.975 93.082 1.995 -0.347 -3.045 HB11 CIB 30
CIB HB12 2HB1 H 0 0 N N N N N N 122.286 25.027 91.721 1.249 -1.872 -2.510 HB12 CIB 31
CIB HG1 HG1 H 0 1 N N N N N N 119.185 25.046 91.505 1.254 -0.798 -5.368 HG1 CIB 32
CIB HD11 1HD1 H 0 0 N N N N N N 119.656 27.459 90.915 2.751 -2.725 -5.808 HD11 CIB 33
CIB HD12 2HD1 H 0 0 N N N N N N 120.443 27.173 92.582 3.469 -1.618 -4.612 HD12 CIB 34
CIB HD13 3HD1 H 0 0 N N N N N N 121.476 27.256 91.273 2.722 -3.143 -4.078 HD13 CIB 35
CIB HD21 1HD2 H 0 0 N N N N N N 119.617 25.703 89.099 0.242 -3.426 -4.188 HD21 CIB 36
CIB HD22 2HD2 H 0 0 N N N N N N 121.427 25.434 89.348 -0.777 -2.102 -4.801 HD22 CIB 37
CIB HD23 3HD2 H 0 0 N N N N N N 120.425 24.075 89.428 0.271 -3.008 -5.918 HD23 CIB 38
CIB H251 1H25 H 0 0 N N N N N N 118.393 19.499 93.168 1.385 3.590 -4.820 H251 CIB 39
CIB H252 2H25 H 0 0 N N N N N N 118.530 20.962 94.234 0.668 2.483 -6.015 H252 CIB 40
CIB H253 3H25 H 0 0 N N N N N N 117.700 21.119 92.733 -0.381 3.388 -4.899 H253 CIB 41
CIB HN2 HN2 H 0 1 N N N N N N 123.361 22.011 91.052 -1.110 -1.455 -0.898 HN2 CIB 42
CIB HA2 HA2 H 0 1 N N N N N N 124.604 21.847 93.793 -0.646 1.039 0.651 HA2 CIB 43
CIB HB21 1HB2 H 0 0 N N N N N N 125.126 19.851 91.449 -2.847 -1.056 0.921 HB21 CIB 44
CIB HB22 2HB2 H 0 0 N N N N N N 125.974 19.824 92.948 -2.587 0.284 2.062 HB22 CIB 45
CIB HG2 HG2 H 0 1 N N N N N N 122.933 19.288 92.620 -3.109 0.609 -0.926 HG2 CIB 46
CIB HD31 1HD3 H 0 0 N N N N N N 123.619 16.880 93.248 -5.327 1.451 -0.205 HD31 CIB 47
CIB HD32 2HD3 H 0 0 N N N N N N 124.571 17.413 91.752 -5.092 -0.240 0.295 HD32 CIB 48
CIB HD33 3HD3 H 0 0 N N N N N N 125.397 17.393 93.222 -4.921 1.072 1.485 HD33 CIB 49
CIB HD41 1HD4 H 0 0 N N N N N N 122.989 18.516 95.091 -2.859 2.584 1.384 HD41 CIB 50
CIB HD42 2HD4 H 0 0 N N N N N N 124.720 19.134 95.202 -1.775 2.440 -0.020 HD42 CIB 51
CIB HD43 3HD4 H 0 0 N N N N N N 123.496 20.281 94.953 -3.446 3.013 -0.241 HD43 CIB 52
CIB HN3 HN3 H 0 1 N N N N N N 126.715 22.133 93.909 -0.713 0.277 3.235 HN3 CIB 53
CIB HA3 HA3 H 0 1 N N N N N N 128.246 23.791 91.878 1.458 -1.690 3.378 HA3 CIB 54
CIB H3 H3 H 0 1 N N N N N N 130.306 22.052 92.731 0.143 -3.087 5.137 H3 CIB 55
CIB HB31 1HB3 H 0 0 N N N N N N 128.610 23.446 94.940 1.619 -0.969 5.745 HB31 CIB 56
CIB HB32 2HB3 H 0 0 N N N N N N 129.726 24.294 93.955 0.165 0.036 5.537 HB32 CIB 57
CIB HG31 1HG3 H 0 0 N N N N N N 126.798 25.208 93.787 1.323 1.347 3.780 HG31 CIB 58
CIB HG32 2HG3 H 0 0 N N N N N N 127.590 25.495 95.265 2.777 0.342 3.987 HG32 CIB 59
CIB HE31 1HE3 H 0 0 N N N N N N 127.988 28.496 92.657 3.545 3.428 5.922 HE31 CIB 60
CIB HE32 2HE3 H 0 0 N N N N N N 126.767 27.145 92.382 4.095 2.374 4.597 HE32 CIB 61
CIB HE33 3HE3 H 0 0 N N N N N N 126.785 27.883 93.909 2.641 3.380 4.390 HE33 CIB 62
CIB H191 1H19 H 0 0 N N N N N N 129.239 27.021 94.297 2.937 1.063 6.355 H191 CIB 63
CIB H192 2H19 H 0 0 N N N N N N 129.221 26.283 92.770 1.483 2.068 6.147 H192 CIB 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CIB N1 CA1 SING N N 1
CIB N1 C10 SING N N 2
CIB N1 HN1 SING N N 3
CIB CA1 C1 SING N N 4
CIB CA1 CB1 SING N N 5
CIB CA1 HA1 SING N N 6
CIB C1 O1 DOUB N N 7
CIB C1 N2 SING N N 8
CIB CB1 CG1 SING N N 9
CIB CB1 HB11 SING N N 10
CIB CB1 HB12 SING N N 11
CIB CG1 CD1 SING N N 12
CIB CG1 CD2 SING N N 13
CIB CG1 HG1 SING N N 14
CIB CD1 HD11 SING N N 15
CIB CD1 HD12 SING N N 16
CIB CD1 HD13 SING N N 17
CIB CD2 HD21 SING N N 18
CIB CD2 HD22 SING N N 19
CIB CD2 HD23 SING N N 20
CIB C10 C25 SING N N 21
CIB C10 O28 DOUB N N 22
CIB C25 H251 SING N N 23
CIB C25 H252 SING N N 24
CIB C25 H253 SING N N 25
CIB N2 CA2 SING N N 26
CIB N2 HN2 SING N N 27
CIB CA2 C2 SING N N 28
CIB CA2 CB2 SING N N 29
CIB CA2 HA2 SING N N 30
CIB C2 O2 DOUB N N 31
CIB C2 N3 SING N N 32
CIB CB2 CG2 SING N N 33
CIB CB2 HB21 SING N N 34
CIB CB2 HB22 SING N N 35
CIB CG2 CD3 SING N N 36
CIB CG2 CD4 SING N N 37
CIB CG2 HG2 SING N N 38
CIB CD3 HD31 SING N N 39
CIB CD3 HD32 SING N N 40
CIB CD3 HD33 SING N N 41
CIB CD4 HD41 SING N N 42
CIB CD4 HD42 SING N N 43
CIB CD4 HD43 SING N N 44
CIB N3 CA3 SING N N 45
CIB N3 HN3 SING N N 46
CIB CA3 C3 SING N N 47
CIB CA3 CB3 SING N N 48
CIB CA3 HA3 SING N N 49
CIB C3 O3 DOUB N N 50
CIB C3 H3 SING N N 51
CIB CB3 CG3 SING N N 52
CIB CB3 HB31 SING N N 53
CIB CB3 HB32 SING N N 54
CIB CG3 C19 SING N N 55
CIB CG3 HG31 SING N N 56
CIB CG3 HG32 SING N N 57
CIB CE3 C19 SING N N 58
CIB CE3 HE31 SING N N 59
CIB CE3 HE32 SING N N 60
CIB CE3 HE33 SING N N 61
CIB C19 H191 SING N N 62
CIB C19 H192 SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CIB SMILES ACDLabs 10.04 O=C(NC(C(=O)NC(C(=O)NC(C=O)CCCC)CC(C)C)CC(C)C)C
CIB SMILES_CANONICAL CACTVS 3.341 CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(C)=O)C=O
CIB SMILES CACTVS 3.341 CCCC[CH](NC(=O)[CH](CC(C)C)NC(=O)[CH](CC(C)C)NC(C)=O)C=O
CIB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCC[C@@H](C=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)C
CIB SMILES "OpenEye OEToolkits" 1.5.0 CCCCC(C=O)NC(=O)C(CC(C)C)NC(=O)C(CC(C)C)NC(=O)C
CIB InChI InChI 1.03 InChI=1S/C20H37N3O4/c1-7-8-9-16(12-24)22-19(26)18(11-14(4)5)23-20(27)17(10-13(2)3)21-15(6)25/h12-14,16-18H,7-11H2,1-6H3,(H,21,25)(H,22,26)(H,23,27)/t16-,17-,18-/m0/s1
CIB InChIKey InChI 1.03 FMYKJLXRRQTBOR-BZSNNMDCSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CIB "SYSTEMATIC NAME" ACDLabs 10.04 N-acetyl-L-leucyl-N-[(1S)-1-formylpentyl]-L-leucinamide
CIB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-acetamido-4-methyl-N-[(2S)-4-methyl-1-oxo-1-[[(2S)-1-oxohexan-2-yl]amino]pentan-2-yl]pentanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CIB 'Create component' 2003-01-22 RCSB
CIB 'Modify descriptor' 2011-06-04 RCSB
CIB 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id CIB
_pdbx_chem_comp_synonyms.name "CALPAIN IHIBITOR I"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id CIB
_pdbe_chem_comp_drugbank_details.drugbank_id DB07558
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name acetylleucyl-leucyl-norleucinal
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 110044-82-1
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
CIB 'CALPAIN IHIBITOR I' wwPDB ?
CIB Ac-Leu-leu-nle-al DrugBank ?
CIB Acetyl-leucyl-leucyl-norleucine-aldehyde DrugBank ?
CIB Acetylleucyl-leucyl-norleucinal DrugBank ?
CIB N-Ac-Leu-leu-norleucinal DrugBank ?
CIB N-acetylleucylleucylnorleucinal DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CIB
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07558
_pdbe_chem_comp_drugbank_classification.parent Dipeptides
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.'
#
_pdbe_chem_comp_drugbank_targets.comp_id CIB
_pdbe_chem_comp_drugbank_targets.drugbank_id DB07558
_pdbe_chem_comp_drugbank_targets.name 'Proteasome subunit alpha type-7'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id O14818
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CIB N1 N 6.897 3.000 1
CIB CA1 C 6.897 1.500 2
CIB C1 C 8.196 0.750 3
CIB O1 O 9.495 1.500 4
CIB CB1 C 5.598 0.750 5
CIB CG1 C 4.299 1.500 6
CIB CD1 C 3.000 0.750 7
CIB CD2 C 4.299 3.000 8
CIB C10 C 8.196 3.750 9
CIB C25 C 9.495 3.000 10
CIB O28 O 8.196 5.250 11
CIB N2 N 8.196 -0.750 12
CIB CA2 C 9.495 -1.500 13
CIB C2 C 10.794 -0.750 14
CIB O2 O 10.794 0.750 15
CIB CB2 C 9.495 -3.000 16
CIB CG2 C 8.196 -3.750 17
CIB CD3 C 8.196 -5.250 18
CIB CD4 C 6.897 -3.000 19
CIB N3 N 12.093 -1.500 20
CIB CA3 C 13.392 -0.750 21
CIB C3 C 14.691 -1.500 22
CIB O3 O 15.990 -0.750 23
CIB CB3 C 13.392 0.750 24
CIB CG3 C 14.691 1.500 25
CIB CE3 C 15.990 3.750 26
CIB C19 C 14.691 3.000 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CIB N1 CA1 SINGLE NONE 1
CIB N1 C10 SINGLE NONE 2
CIB CA1 C1 SINGLE NONE 3
CIB CA1 CB1 SINGLE BEGINDASH 4
CIB C1 O1 DOUBLE NONE 5
CIB C1 N2 SINGLE NONE 6
CIB CB1 CG1 SINGLE NONE 7
CIB CG1 CD1 SINGLE NONE 8
CIB CG1 CD2 SINGLE NONE 9
CIB C10 C25 SINGLE NONE 10
CIB C10 O28 DOUBLE NONE 11
CIB N2 CA2 SINGLE NONE 12
CIB CA2 C2 SINGLE NONE 13
CIB CA2 CB2 SINGLE BEGINDASH 14
CIB C2 O2 DOUBLE NONE 15
CIB C2 N3 SINGLE NONE 16
CIB CB2 CG2 SINGLE NONE 17
CIB CG2 CD3 SINGLE NONE 18
CIB CG2 CD4 SINGLE NONE 19
CIB N3 CA3 SINGLE NONE 20
CIB CA3 C3 SINGLE NONE 21
CIB CA3 CB3 SINGLE BEGINWEDGE 22
CIB C3 O3 DOUBLE NONE 23
CIB CB3 CG3 SINGLE NONE 24
CIB CG3 C19 SINGLE NONE 25
CIB CE3 C19 SINGLE NONE 26
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CIB amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
CIB peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CIB N1 F1 1
CIB C10 F1 1
CIB O28 F1 1
CIB C25 F1 1
CIB N2 F1 2
CIB C1 F1 2
CIB O1 F1 2
CIB CA1 F1 2
CIB N3 F1 3
CIB C2 F1 3
CIB O2 F1 3
CIB CA2 F1 3
CIB O1 F2 1
CIB C1 F2 1
CIB CA1 F2 1
CIB N1 F2 1
CIB O2 F2 2
CIB C2 F2 2
CIB CA2 F2 2
CIB N2 F2 2
CIB O3 F2 3
CIB C3 F2 3
CIB CA3 F2 3
CIB N3 F2 3
#
_pdbe_chem_comp_rdkit_properties.comp_id CIB
_pdbe_chem_comp_rdkit_properties.exactmw 383.278
_pdbe_chem_comp_rdkit_properties.amw 383.533
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 19
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 64
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.800
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 215.127
_pdbe_chem_comp_rdkit_properties.tpsa 104.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.942
_pdbe_chem_comp_rdkit_properties.CrippenMR 105.965
_pdbe_chem_comp_rdkit_properties.chi0v 12.975
_pdbe_chem_comp_rdkit_properties.chi1v 6.158
_pdbe_chem_comp_rdkit_properties.chi2v 1.872
_pdbe_chem_comp_rdkit_properties.chi3v 1.872
_pdbe_chem_comp_rdkit_properties.chi4v 1.073
_pdbe_chem_comp_rdkit_properties.chi0n 49.975
_pdbe_chem_comp_rdkit_properties.chi1n 24.500
_pdbe_chem_comp_rdkit_properties.chi2n 1.872
_pdbe_chem_comp_rdkit_properties.chi3n 1.872
_pdbe_chem_comp_rdkit_properties.chi4n 1.073
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.920
_pdbe_chem_comp_rdkit_properties.kappa1 3.898
_pdbe_chem_comp_rdkit_properties.kappa2 13.279
_pdbe_chem_comp_rdkit_properties.kappa3 11.407
_pdbe_chem_comp_rdkit_properties.Phi 1.917
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CIB UniChem ChEMBL CHEMBL304784
CIB UniChem DrugBank DB07558
CIB UniChem PDBe CIB
CIB UniChem 'KEGG LIGAND' C11306
CIB UniChem ChEBI 2423
CIB UniChem ZINC ZINC000003826241
CIB UniChem eMolecules 715635
CIB UniChem 'PubChem TPHARMA' 14756076
CIB UniChem LINCS LSM-37060
CIB UniChem ACTor 110044-82-1
CIB UniChem BindingDb 50069792
CIB UniChem BRENDA 10273
CIB UniChem BRENDA 12965
CIB UniChem BRENDA 132578
CIB UniChem BRENDA 132650
CIB UniChem BRENDA 144175
CIB UniChem BRENDA 160142
CIB UniChem BRENDA 160144
CIB UniChem BRENDA 160145
CIB UniChem BRENDA 167878
CIB UniChem BRENDA 21177
CIB UniChem BRENDA 25515
CIB UniChem BRENDA 66556
CIB UniChem BRENDA 69203
CIB UniChem MedChemExpress HY-18964
CIB UniChem 'Probes And Drugs' PD005075
CIB UniChem Nikkaji J675.054K
CIB UniChem SureChEMBL SCHEMBL231491
CIB UniChem 'PubChem TPHARMA' 14780306
CIB UniChem PubChem 443118
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CIB N1 -4.151 -0.021 -1.274 ETKDGv3 1
CIB CA1 -3.260 0.413 -0.191 ETKDGv3 2
CIB C1 -1.989 1.042 -0.715 ETKDGv3 3
CIB O1 -1.584 0.794 -1.884 ETKDGv3 4
CIB CB1 -2.955 -0.742 0.792 ETKDGv3 5
CIB CG1 -2.183 -1.944 0.179 ETKDGv3 6
CIB CD1 -3.131 -2.965 -0.469 ETKDGv3 7
CIB CD2 -1.346 -2.641 1.260 ETKDGv3 8
CIB C10 -5.560 -0.209 -1.076 ETKDGv3 9
CIB C25 -6.403 -0.741 -2.188 ETKDGv3 10
CIB O28 -6.089 0.048 0.039 ETKDGv3 11
CIB N2 -1.208 1.881 0.149 ETKDGv3 12
CIB CA2 0.113 2.390 -0.238 ETKDGv3 13
CIB C2 1.082 1.237 -0.295 ETKDGv3 14
CIB O2 1.673 0.984 -1.379 ETKDGv3 15
CIB CB2 0.574 3.483 0.759 ETKDGv3 16
CIB CG2 1.683 4.422 0.218 ETKDGv3 17
CIB CD3 3.054 3.734 0.153 ETKDGv3 18
CIB CD4 1.780 5.675 1.102 ETKDGv3 19
CIB N3 1.291 0.408 0.862 ETKDGv3 20
CIB CA3 2.273 -0.682 0.941 ETKDGv3 21
CIB C3 3.671 -0.120 0.948 ETKDGv3 22
CIB O3 4.137 0.427 -0.039 ETKDGv3 23
CIB CB3 2.053 -1.727 -0.180 ETKDGv3 24
CIB CG3 2.415 -3.168 0.232 ETKDGv3 25
CIB CE3 4.780 -3.234 -0.736 ETKDGv3 26
CIB C19 3.908 -3.406 0.508 ETKDGv3 27
CIB HN1 -3.758 -0.257 -2.213 ETKDGv3 28
CIB HA1 -3.784 1.210 0.384 ETKDGv3 29
CIB HB11 -2.363 -0.308 1.628 ETKDGv3 30
CIB HB12 -3.903 -1.097 1.252 ETKDGv3 31
CIB HG1 -1.478 -1.585 -0.600 ETKDGv3 32
CIB HD11 -2.554 -3.837 -0.845 ETKDGv3 33
CIB HD12 -3.660 -2.527 -1.336 ETKDGv3 34
CIB HD13 -3.881 -3.329 0.266 ETKDGv3 35
CIB HD21 -0.607 -1.933 1.691 ETKDGv3 36
CIB HD22 -0.784 -3.495 0.824 ETKDGv3 37
CIB HD23 -1.998 -3.020 2.076 ETKDGv3 38
CIB H251 -7.481 -0.671 -1.929 ETKDGv3 39
CIB H252 -6.218 -0.154 -3.112 ETKDGv3 40
CIB H253 -6.143 -1.804 -2.373 ETKDGv3 41
CIB HN2 -1.574 2.079 1.108 ETKDGv3 42
CIB HA2 0.024 2.855 -1.246 ETKDGv3 43
CIB HB21 -0.315 4.113 0.987 ETKDGv3 44
CIB HB22 0.891 3.029 1.723 ETKDGv3 45
CIB HG2 1.409 4.760 -0.806 ETKDGv3 46
CIB HD31 3.287 3.223 1.112 ETKDGv3 47
CIB HD32 3.853 4.476 -0.056 ETKDGv3 48
CIB HD33 3.082 2.999 -0.674 ETKDGv3 49
CIB HD41 2.052 5.398 2.143 ETKDGv3 50
CIB HD42 0.810 6.216 1.115 ETKDGv3 51
CIB HD43 2.549 6.371 0.703 ETKDGv3 52
CIB HN3 0.708 0.590 1.710 ETKDGv3 53
CIB HA3 2.122 -1.186 1.922 ETKDGv3 54
CIB H3 4.277 -0.199 1.845 ETKDGv3 55
CIB HB31 0.975 -1.735 -0.448 ETKDGv3 56
CIB HB32 2.594 -1.446 -1.108 ETKDGv3 57
CIB HG31 1.838 -3.440 1.142 ETKDGv3 58
CIB HG32 2.084 -3.860 -0.573 ETKDGv3 59
CIB HE31 4.810 -2.171 -1.052 ETKDGv3 60
CIB HE32 5.818 -3.554 -0.506 ETKDGv3 61
CIB HE33 4.394 -3.857 -1.571 ETKDGv3 62
CIB H191 4.029 -4.450 0.870 ETKDGv3 63
CIB H192 4.269 -2.740 1.318 ETKDGv3 64
#