data_CKM
#
_chem_comp.id CKM
_chem_comp.name
N-(3-fluoro-2-{2-[(2S,6R)-6-methyl-1-(phenylsulfonyl)piperazin-2-yl]ethyl}phenyl)-3,3-bis(4-fluorophenyl)propanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H34 F3 N3 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-09-27
_chem_comp.pdbx_modified_date 2017-12-29
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 621.712
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CKM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6B38
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CKM C2 C1 C 0 1 N N S N N N -15.348 20.487 -5.529 3.612 0.514 -1.360 C2 CKM 1
CKM C7 C2 C 0 1 Y N N N N N -19.970 19.251 -6.709 1.870 -2.125 0.868 C7 CKM 2
CKM C9 C3 C 0 1 Y N N N N N -19.758 17.574 -8.382 1.387 -4.470 0.846 C9 CKM 3
CKM C10 C4 C 0 1 Y N N N N N -18.452 17.961 -8.626 2.737 -4.747 0.744 C10 CKM 4
CKM C11 C5 C 0 1 Y N N N N N -17.882 19.000 -7.917 3.654 -3.714 0.697 C11 CKM 5
CKM C12 C6 C 0 1 N N N N N N -14.772 22.805 -4.635 1.953 2.260 -0.696 C12 CKM 6
CKM C13 C7 C 0 1 Y N N N N N -13.895 23.583 -3.686 1.323 2.975 0.472 C13 CKM 7
CKM C15 C8 C 0 1 Y N N N N N -11.991 24.990 -3.193 -0.409 3.133 2.131 C15 CKM 8
CKM C18 C9 C 0 1 Y N N N N N -14.208 23.598 -2.336 1.892 4.138 0.961 C18 CKM 9
CKM N19 N1 N 0 1 N N N N N N -12.384 24.330 -5.467 -0.413 1.300 0.559 N19 CKM 10
CKM C20 C10 C 0 1 N N N N N N -11.152 23.869 -5.875 -1.721 1.054 0.772 C20 CKM 11
CKM C22 C11 C 0 1 N N N N N N -10.838 24.199 -7.313 -2.320 -0.261 0.344 C22 CKM 12
CKM C8 C12 C 0 1 Y N N N N N -20.528 18.215 -7.433 0.953 -3.159 0.908 C8 CKM 13
CKM C16 C13 C 0 1 Y N N N N N -12.308 24.982 -1.848 0.167 4.290 2.619 C16 CKM 14
CKM C26 C14 C 0 1 Y N N N N N -12.510 21.130 -8.302 -4.202 0.969 -1.431 C26 CKM 15
CKM C30 C15 C 0 1 Y N N N N N -13.080 23.271 -9.192 -5.527 1.524 0.486 C30 CKM 16
CKM C31 C16 C 0 1 Y N N N N N -10.134 23.984 -10.340 -5.040 -2.358 1.366 C31 CKM 17
CKM C35 C17 C 0 1 Y N N N N N -9.099 21.934 -9.677 -4.244 -2.170 -0.886 C35 CKM 18
CKM C17 C18 C 0 1 Y N N N N N -13.420 24.281 -1.432 1.314 4.794 2.034 C17 CKM 19
CKM C27 C19 C 0 1 Y N N N N N -13.747 20.646 -8.684 -4.870 1.927 -2.171 C27 CKM 20
CKM C29 C20 C 0 1 Y N N N N N -14.312 22.793 -9.580 -6.192 2.486 -0.250 C29 CKM 21
CKM C32 C21 C 0 1 Y N N N N N -9.393 24.004 -11.507 -5.570 -3.601 1.076 C32 CKM 22
CKM C34 C22 C 0 1 Y N N N N N -8.355 21.941 -10.846 -4.778 -3.410 -1.179 C34 CKM 23
CKM C25 C23 C 0 1 Y N N N N N -12.176 22.443 -8.551 -4.532 0.766 -0.104 C25 CKM 24
CKM C24 C24 C 0 1 Y N N N N N -9.988 22.963 -9.415 -4.380 -1.641 0.385 C24 CKM 25
CKM C14 C25 C 0 1 Y N N N N N -12.771 24.291 -4.102 0.169 2.471 1.055 C14 CKM 26
CKM C28 C26 C 0 1 Y N N N N N -14.641 21.477 -9.323 -5.865 2.687 -1.581 C28 CKM 27
CKM C33 C27 C 0 1 Y N N N N N -8.514 22.972 -11.750 -5.439 -4.129 -0.197 C33 CKM 28
CKM C6 C28 C 0 1 Y N N N N N -18.663 19.619 -6.962 3.220 -2.402 0.760 C6 CKM 29
CKM C C29 C 0 1 N N N N N N -16.476 17.957 -4.489 6.220 -0.089 -2.502 C CKM 30
CKM C1 C30 C 0 1 N N N N N N -14.726 19.122 -5.754 4.492 1.554 -2.061 C1 CKM 31
CKM C38 C31 C 0 1 N N R N N N -17.215 19.248 -4.201 5.410 -1.197 -1.819 C38 CKM 32
CKM C39 C32 C 0 1 N N N N N N -17.142 19.587 -2.731 6.356 -2.134 -1.065 C39 CKM 33
CKM C4 C33 C 0 1 N N N N N N -14.418 21.320 -4.655 2.888 1.165 -0.180 C4 CKM 34
CKM C23 C34 C 0 1 N N N N N N -10.813 22.921 -8.152 -3.808 -0.283 0.700 C23 CKM 35
CKM N3 N2 N 0 1 N N N N N N -16.729 20.435 -4.953 4.472 -0.574 -0.873 N3 CKM 36
CKM N N3 N 0 1 N N N N N N -15.027 18.265 -4.587 5.300 0.891 -3.093 N CKM 37
CKM O21 O1 O 0 1 N N N N N N -10.360 23.281 -5.157 -2.415 1.891 1.309 O21 CKM 38
CKM O O2 O 0 1 N N N N N N -17.389 21.883 -6.988 3.821 -0.012 1.441 O CKM 39
CKM O5 O3 O 0 1 N N N N N N -19.024 21.454 -5.148 5.653 -1.656 1.005 O5 CKM 40
CKM F37 F1 F 0 1 N N N N N N -15.842 20.996 -9.703 -6.514 3.627 -2.301 F37 CKM 41
CKM F36 F2 F 0 1 N N N N N N -7.807 22.991 -12.895 -5.957 -5.344 -0.481 F36 CKM 42
CKM F F3 F 0 1 N N N N N N -15.286 22.917 -1.902 3.013 4.632 0.391 F CKM 43
CKM S S1 S 0 1 N N N N N N -17.982 20.967 -6.027 4.388 -1.085 0.701 S CKM 44
CKM H1 H1 H 0 1 N N N N N N -15.413 20.985 -6.508 2.880 0.116 -2.063 H1 CKM 45
CKM H2 H2 H 0 1 N N N N N N -20.548 19.766 -5.956 1.531 -1.101 0.916 H2 CKM 46
CKM H3 H3 H 0 1 N N N N N N -20.182 16.755 -8.944 0.670 -5.278 0.877 H3 CKM 47
CKM H4 H4 H 0 1 N N N N N N -17.873 17.446 -9.378 3.076 -5.772 0.695 H4 CKM 48
CKM H5 H5 H 0 1 N N N N N N -16.866 19.316 -8.102 4.708 -3.930 0.617 H5 CKM 49
CKM H6 H6 H 0 1 N N N N N N -14.648 23.213 -5.649 1.172 1.812 -1.311 H6 CKM 50
CKM H7 H7 H 0 1 N N N N N N -15.820 22.916 -4.321 2.522 2.972 -1.294 H7 CKM 51
CKM H8 H8 H 0 1 N N N N N N -11.131 25.544 -3.538 -1.304 2.741 2.589 H8 CKM 52
CKM H9 H9 H 0 1 N N N N N N -13.018 24.700 -6.146 0.125 0.664 0.061 H9 CKM 53
CKM H10 H10 H 0 1 N N N N N N -9.855 24.689 -7.367 -2.202 -0.381 -0.733 H10 CKM 54
CKM H11 H11 H 0 1 N N N N N N -11.609 24.878 -7.707 -1.811 -1.077 0.858 H11 CKM 55
CKM H12 H12 H 0 1 N N N N N N -21.550 17.912 -7.259 -0.102 -2.942 0.987 H12 CKM 56
CKM H13 H13 H 0 1 N N N N N N -11.696 25.515 -1.136 -0.280 4.802 3.459 H13 CKM 57
CKM H14 H14 H 0 1 N N N N N N -11.805 20.478 -7.808 -3.425 0.376 -1.891 H14 CKM 58
CKM H15 H15 H 0 1 N N N N N N -12.818 24.300 -9.390 -5.784 1.364 1.523 H15 CKM 59
CKM H16 H16 H 0 1 N N N N N N -10.839 24.779 -10.146 -5.145 -1.944 2.358 H16 CKM 60
CKM H17 H17 H 0 1 N N N N N N -8.986 21.126 -8.970 -3.728 -1.610 -1.651 H17 CKM 61
CKM H18 H18 H 0 1 N N N N N N -13.678 24.266 -0.383 1.759 5.701 2.415 H18 CKM 62
CKM H19 H19 H 0 1 N N N N N N -14.012 19.619 -8.482 -4.614 2.082 -3.208 H19 CKM 63
CKM H20 H20 H 0 1 N N N N N N -15.015 23.442 -10.081 -6.968 3.078 0.211 H20 CKM 64
CKM H21 H21 H 0 1 N N N N N N -9.501 24.813 -12.214 -6.085 -4.160 1.843 H21 CKM 65
CKM H22 H22 H 0 1 N N N N N N -7.655 21.144 -11.049 -4.673 -3.823 -2.171 H22 CKM 66
CKM H23 H23 H 0 1 N N N N N N -16.831 17.528 -5.438 6.854 0.404 -1.765 H23 CKM 67
CKM H24 H24 H 0 1 N N N N N N -16.650 17.239 -3.674 6.842 -0.523 -3.285 H24 CKM 68
CKM H25 H25 H 0 1 N N N N N N -15.147 18.669 -6.664 3.861 2.312 -2.524 H25 CKM 69
CKM H26 H26 H 0 1 N N N N N N -13.637 19.226 -5.866 5.150 2.025 -1.331 H26 CKM 70
CKM H27 H27 H 0 1 N N N N N N -18.273 19.092 -4.457 4.857 -1.762 -2.569 H27 CKM 71
CKM H28 H28 H 0 1 N N N N N N -17.495 18.730 -2.139 6.984 -1.551 -0.391 H28 CKM 72
CKM H29 H29 H 0 1 N N N N N N -16.101 19.817 -2.459 5.772 -2.851 -0.487 H29 CKM 73
CKM H30 H30 H 0 1 N N N N N N -17.777 20.461 -2.525 6.984 -2.667 -1.778 H30 CKM 74
CKM H31 H31 H 0 1 N N N N N N -14.470 20.935 -3.626 2.306 0.411 0.350 H31 CKM 75
CKM H32 H32 H 0 1 N N N N N N -13.392 21.211 -5.036 3.620 1.602 0.499 H32 CKM 76
CKM H33 H33 H 0 1 N N N N N N -10.375 22.138 -7.515 -3.931 -0.075 1.763 H33 CKM 77
CKM H34 H34 H 0 1 N N N N N N -14.519 17.408 -4.675 4.712 0.461 -3.791 H34 CKM 78
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CKM F36 C33 SING N N 1
CKM C33 C32 DOUB Y N 2
CKM C33 C34 SING Y N 3
CKM C32 C31 SING Y N 4
CKM C34 C35 DOUB Y N 5
CKM C31 C24 DOUB Y N 6
CKM F37 C28 SING N N 7
CKM C35 C24 SING Y N 8
CKM C29 C28 DOUB Y N 9
CKM C29 C30 SING Y N 10
CKM C24 C23 SING N N 11
CKM C28 C27 SING Y N 12
CKM C30 C25 DOUB Y N 13
CKM C27 C26 DOUB Y N 14
CKM C10 C9 DOUB Y N 15
CKM C10 C11 SING Y N 16
CKM C25 C26 SING Y N 17
CKM C25 C23 SING N N 18
CKM C9 C8 SING Y N 19
CKM C23 C22 SING N N 20
CKM C11 C6 DOUB Y N 21
CKM C8 C7 DOUB Y N 22
CKM C22 C20 SING N N 23
CKM O S DOUB N N 24
CKM C6 C7 SING Y N 25
CKM C6 S SING N N 26
CKM S O5 DOUB N N 27
CKM S N3 SING N N 28
CKM C20 N19 SING N N 29
CKM C20 O21 DOUB N N 30
CKM C1 C2 SING N N 31
CKM C1 N SING N N 32
CKM C2 N3 SING N N 33
CKM C2 C4 SING N N 34
CKM N19 C14 SING N N 35
CKM N3 C38 SING N N 36
CKM C4 C12 SING N N 37
CKM C12 C13 SING N N 38
CKM N C SING N N 39
CKM C C38 SING N N 40
CKM C38 C39 SING N N 41
CKM C14 C13 DOUB Y N 42
CKM C14 C15 SING Y N 43
CKM C13 C18 SING Y N 44
CKM C15 C16 DOUB Y N 45
CKM C18 F SING N N 46
CKM C18 C17 DOUB Y N 47
CKM C16 C17 SING Y N 48
CKM C2 H1 SING N N 49
CKM C7 H2 SING N N 50
CKM C9 H3 SING N N 51
CKM C10 H4 SING N N 52
CKM C11 H5 SING N N 53
CKM C12 H6 SING N N 54
CKM C12 H7 SING N N 55
CKM C15 H8 SING N N 56
CKM N19 H9 SING N N 57
CKM C22 H10 SING N N 58
CKM C22 H11 SING N N 59
CKM C8 H12 SING N N 60
CKM C16 H13 SING N N 61
CKM C26 H14 SING N N 62
CKM C30 H15 SING N N 63
CKM C31 H16 SING N N 64
CKM C35 H17 SING N N 65
CKM C17 H18 SING N N 66
CKM C27 H19 SING N N 67
CKM C29 H20 SING N N 68
CKM C32 H21 SING N N 69
CKM C34 H22 SING N N 70
CKM C H23 SING N N 71
CKM C H24 SING N N 72
CKM C1 H25 SING N N 73
CKM C1 H26 SING N N 74
CKM C38 H27 SING N N 75
CKM C39 H28 SING N N 76
CKM C39 H29 SING N N 77
CKM C39 H30 SING N N 78
CKM C4 H31 SING N N 79
CKM C4 H32 SING N N 80
CKM C23 H33 SING N N 81
CKM N H34 SING N N 82
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CKM SMILES ACDLabs 12.01 C1(N(C(CNC1)C)S(c2ccccc2)(=O)=O)CCc3c(F)cccc3NC(=O)CC(c4ccc(cc4)F)c5ccc(cc5)F
CKM InChI InChI 1.03 InChI=1S/C34H34F3N3O3S/c1-23-21-38-22-28(40(23)44(42,43)29-6-3-2-4-7-29)18-19-30-32(37)8-5-9-33(30)39-34(41)20-31(24-10-14-26(35)15-11-24)25-12-16-27(36)17-13-25/h2-17,23,28,31,38H,18-22H2,1H3,(H,39,41)/t23-,28+/m1/s1
CKM InChIKey InChI 1.03 PKXSVHQEPFONSZ-LXFBAYGMSA-N
CKM SMILES_CANONICAL CACTVS 3.385 C[C@@H]1CNC[C@H](CCc2c(F)cccc2NC(=O)CC(c3ccc(F)cc3)c4ccc(F)cc4)N1[S](=O)(=O)c5ccccc5
CKM SMILES CACTVS 3.385 C[CH]1CNC[CH](CCc2c(F)cccc2NC(=O)CC(c3ccc(F)cc3)c4ccc(F)cc4)N1[S](=O)(=O)c5ccccc5
CKM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[C@@H]1CNC[C@@H](N1S(=O)(=O)c2ccccc2)CCc3c(cccc3F)NC(=O)CC(c4ccc(cc4)F)c5ccc(cc5)F
CKM SMILES "OpenEye OEToolkits" 2.0.6 CC1CNCC(N1S(=O)(=O)c2ccccc2)CCc3c(cccc3F)NC(=O)CC(c4ccc(cc4)F)c5ccc(cc5)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CKM "SYSTEMATIC NAME" ACDLabs 12.01 N-(3-fluoro-2-{2-[(2S,6R)-6-methyl-1-(phenylsulfonyl)piperazin-2-yl]ethyl}phenyl)-3,3-bis(4-fluorophenyl)propanamide
CKM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 ~{N}-[3-fluoranyl-2-[2-[(2~{S},6~{R})-6-methyl-1-(phenylsulfonyl)piperazin-2-yl]ethyl]phenyl]-3,3-bis(4-fluorophenyl)propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CKM 'Create component' 2017-09-27 RCSB
CKM 'Initial release' 2018-01-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CKM C2 C 15.990 -1.875 1
CKM C7 C 18.588 -6.375 2
CKM C9 C 17.290 -8.625 3
CKM C10 C 15.990 -7.875 4
CKM C11 C 15.990 -6.375 5
CKM C12 C 13.392 -1.875 6
CKM C13 C 12.093 -2.625 7
CKM C15 C 9.495 -2.625 8
CKM C18 C 12.093 -4.125 9
CKM N19 N 10.794 -0.375 10
CKM C20 C 9.495 0.375 11
CKM C22 C 9.495 1.875 12
CKM C8 C 18.588 -7.875 13
CKM C16 C 9.495 -4.125 14
CKM C26 C 6.897 0.375 15
CKM C30 C 5.598 2.625 16
CKM C31 C 9.495 4.875 17
CKM C35 C 6.897 4.875 18
CKM C17 C 10.794 -4.875 19
CKM C27 C 5.598 -0.375 20
CKM C29 C 4.299 1.875 21
CKM C32 C 9.495 6.375 22
CKM C34 C 6.897 6.375 23
CKM C25 C 6.897 1.875 24
CKM C24 C 8.196 4.125 25
CKM C14 C 10.794 -1.875 26
CKM C28 C 4.299 0.375 27
CKM C33 C 8.196 7.125 28
CKM C6 C 17.290 -5.625 29
CKM C C 18.588 -0.375 30
CKM C1 C 15.990 -0.375 31
CKM C38 C 18.588 -1.875 32
CKM C39 C 19.887 -2.625 33
CKM C4 C 14.691 -2.625 34
CKM C23 C 8.196 2.625 35
CKM N3 N 17.290 -2.625 36
CKM N N 17.290 0.375 37
CKM O21 O 8.196 -0.375 38
CKM O O 15.790 -4.125 39
CKM O5 O 18.790 -4.125 40
CKM F37 F 3.000 -0.375 41
CKM F36 F 8.196 8.625 42
CKM F F 13.392 -4.875 43
CKM S S 17.290 -4.125 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CKM F36 C33 SINGLE NONE 1
CKM C33 C32 SINGLE NONE 2
CKM C33 C34 DOUBLE NONE 3
CKM C32 C31 DOUBLE NONE 4
CKM C34 C35 SINGLE NONE 5
CKM C31 C24 SINGLE NONE 6
CKM F37 C28 SINGLE NONE 7
CKM C35 C24 DOUBLE NONE 8
CKM C29 C28 DOUBLE NONE 9
CKM C29 C30 SINGLE NONE 10
CKM C24 C23 SINGLE NONE 11
CKM C28 C27 SINGLE NONE 12
CKM C30 C25 DOUBLE NONE 13
CKM C27 C26 DOUBLE NONE 14
CKM C10 C9 DOUBLE NONE 15
CKM C10 C11 SINGLE NONE 16
CKM C25 C26 SINGLE NONE 17
CKM C25 C23 SINGLE NONE 18
CKM C9 C8 SINGLE NONE 19
CKM C23 C22 SINGLE NONE 20
CKM C11 C6 DOUBLE NONE 21
CKM C8 C7 DOUBLE NONE 22
CKM C22 C20 SINGLE NONE 23
CKM O S DOUBLE NONE 24
CKM C6 C7 SINGLE NONE 25
CKM C6 S SINGLE NONE 26
CKM S O5 DOUBLE NONE 27
CKM S N3 SINGLE NONE 28
CKM C20 N19 SINGLE NONE 29
CKM C20 O21 DOUBLE NONE 30
CKM C1 C2 SINGLE NONE 31
CKM C1 N SINGLE NONE 32
CKM C2 N3 SINGLE NONE 33
CKM C2 C4 SINGLE BEGINWEDGE 34
CKM N19 C14 SINGLE NONE 35
CKM N3 C38 SINGLE NONE 36
CKM C4 C12 SINGLE NONE 37
CKM C12 C13 SINGLE NONE 38
CKM N C SINGLE NONE 39
CKM C C38 SINGLE NONE 40
CKM C38 C39 SINGLE BEGINWEDGE 41
CKM C14 C13 SINGLE NONE 42
CKM C14 C15 DOUBLE NONE 43
CKM C13 C18 DOUBLE NONE 44
CKM C15 C16 SINGLE NONE 45
CKM C18 F SINGLE NONE 46
CKM C18 C17 SINGLE NONE 47
CKM C16 C17 DOUBLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CKM MurckoScaffold S1 scaffold 'O=C(CC(c1ccccc1)c1ccccc1)Nc1ccccc1CC[C@H]1CNCCN1S(=O)(=O)c1ccccc1' InChI=1S/C33H35N3O3S/c37-33(24-31(26-12-4-1-5-13-26)27-14-6-2-7-15-27)35-32-19-11-10-16-28(32)20-21-29-25-34-22-23-36(29)40(38,39)30-17-8-3-9-18-30/h1-19,29,31,34H,20-25H2,(H,35,37)/t29-/m0/s1 VVKNMIBWRGAPIP-LJAQVGFWSA-N
CKM amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
CKM phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
CKM piperazine F3 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CKM C2 S1 1
CKM C7 S1 1
CKM C9 S1 1
CKM C10 S1 1
CKM C11 S1 1
CKM C12 S1 1
CKM C13 S1 1
CKM C15 S1 1
CKM C18 S1 1
CKM N19 S1 1
CKM C20 S1 1
CKM C22 S1 1
CKM C8 S1 1
CKM C16 S1 1
CKM C26 S1 1
CKM C30 S1 1
CKM C31 S1 1
CKM C35 S1 1
CKM C17 S1 1
CKM C27 S1 1
CKM C29 S1 1
CKM C32 S1 1
CKM C34 S1 1
CKM C25 S1 1
CKM C24 S1 1
CKM C14 S1 1
CKM C28 S1 1
CKM C33 S1 1
CKM C6 S1 1
CKM C S1 1
CKM C1 S1 1
CKM C38 S1 1
CKM C4 S1 1
CKM C23 S1 1
CKM N3 S1 1
CKM N S1 1
CKM O21 S1 1
CKM O S1 1
CKM O5 S1 1
CKM S S1 1
CKM N19 F1 1
CKM C20 F1 1
CKM O21 F1 1
CKM C22 F1 1
CKM C7 F2 1
CKM C8 F2 1
CKM C9 F2 1
CKM C10 F2 1
CKM C11 F2 1
CKM C6 F2 1
CKM C13 F2 2
CKM C14 F2 2
CKM C15 F2 2
CKM C16 F2 2
CKM C17 F2 2
CKM C18 F2 2
CKM C26 F2 3
CKM C27 F2 3
CKM C28 F2 3
CKM C29 F2 3
CKM C30 F2 3
CKM C25 F2 3
CKM C31 F2 4
CKM C32 F2 4
CKM C33 F2 4
CKM C34 F2 4
CKM C35 F2 4
CKM C24 F2 4
CKM N3 F3 1
CKM C2 F3 1
CKM C1 F3 1
CKM N F3 1
CKM C F3 1
CKM C38 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CKM
_pdbe_chem_comp_rdkit_properties.exactmw 621.227
_pdbe_chem_comp_rdkit_properties.amw 621.725
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 78
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.265
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 303.410
_pdbe_chem_comp_rdkit_properties.tpsa 78.510
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.596
_pdbe_chem_comp_rdkit_properties.CrippenMR 163.145
_pdbe_chem_comp_rdkit_properties.chi0v 21.925
_pdbe_chem_comp_rdkit_properties.chi1v 12.773
_pdbe_chem_comp_rdkit_properties.chi2v 6.521
_pdbe_chem_comp_rdkit_properties.chi3v 6.521
_pdbe_chem_comp_rdkit_properties.chi4v 4.290
_pdbe_chem_comp_rdkit_properties.chi0n 55.109
_pdbe_chem_comp_rdkit_properties.chi1n 28.227
_pdbe_chem_comp_rdkit_properties.chi2n 4.955
_pdbe_chem_comp_rdkit_properties.chi3n 4.955
_pdbe_chem_comp_rdkit_properties.chi4n 3.139
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.990
_pdbe_chem_comp_rdkit_properties.kappa1 10.005
_pdbe_chem_comp_rdkit_properties.kappa2 13.755
_pdbe_chem_comp_rdkit_properties.kappa3 7.204
_pdbe_chem_comp_rdkit_properties.Phi 3.128
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CKM UniChem ChEMBL CHEMBL4162627
CKM UniChem PDBe CKM
CKM UniChem SureChEMBL SCHEMBL16439537
CKM UniChem PubChem 117852958
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CKM C2 3.241 -0.820 0.339 ETKDGv3 1
CKM C7 1.836 2.841 -0.248 ETKDGv3 2
CKM C9 -0.121 4.250 -0.625 ETKDGv3 3
CKM C10 -0.516 3.492 -1.655 ETKDGv3 4
CKM C11 0.278 2.312 -2.052 ETKDGv3 5
CKM C12 1.798 -1.442 2.363 ETKDGv3 6
CKM C13 0.605 -1.026 3.198 ETKDGv3 7
CKM C15 -1.804 -1.114 3.669 ETKDGv3 8
CKM C18 0.779 -0.135 4.199 ETKDGv3 9
CKM N19 -1.017 -2.375 1.743 ETKDGv3 10
CKM C20 -2.316 -2.832 1.344 ETKDGv3 11
CKM C22 -2.833 -2.551 -0.042 ETKDGv3 12
CKM C8 1.115 3.911 0.110 ETKDGv3 13
CKM C16 -1.584 -0.171 4.778 ETKDGv3 14
CKM C26 -1.747 1.007 0.731 ETKDGv3 15
CKM C30 -3.977 0.067 1.050 ETKDGv3 16
CKM C31 -4.512 -0.882 -2.142 ETKDGv3 17
CKM C35 -2.236 -0.510 -2.944 ETKDGv3 18
CKM C17 -0.362 0.300 5.023 ETKDGv3 19
CKM C27 -1.991 1.984 1.612 ETKDGv3 20
CKM C29 -4.245 1.153 2.016 ETKDGv3 21
CKM C32 -5.021 -0.589 -3.345 ETKDGv3 22
CKM C34 -2.803 -0.188 -4.269 ETKDGv3 23
CKM C25 -2.780 -0.020 0.433 ETKDGv3 24
CKM C24 -3.040 -0.843 -1.914 ETKDGv3 25
CKM C14 -0.779 -1.532 2.894 ETKDGv3 26
CKM C28 -3.301 2.061 2.286 ETKDGv3 27
CKM C33 -4.126 -0.224 -4.460 ETKDGv3 28
CKM C6 1.392 1.987 -1.375 ETKDGv3 29
CKM C 4.951 -1.391 -1.936 ETKDGv3 30
CKM C1 3.294 -2.228 -0.326 ETKDGv3 31
CKM C38 4.915 -0.031 -1.190 ETKDGv3 32
CKM C39 5.508 1.144 -1.988 ETKDGv3 33
CKM C4 1.942 -0.534 1.130 ETKDGv3 34
CKM C23 -2.448 -1.137 -0.546 ETKDGv3 35
CKM N3 3.574 0.259 -0.625 ETKDGv3 36
CKM N 3.716 -2.166 -1.735 ETKDGv3 37
CKM O21 -3.014 -3.515 2.141 ETKDGv3 38
CKM O 1.363 -0.609 -1.921 ETKDGv3 39
CKM O5 2.885 0.793 -3.197 ETKDGv3 40
CKM F37 -3.543 3.051 3.180 ETKDGv3 41
CKM F36 -4.647 0.073 -5.676 ETKDGv3 42
CKM F 2.004 0.383 4.470 ETKDGv3 43
CKM S 2.310 0.556 -1.831 ETKDGv3 44
CKM H1 4.040 -0.812 1.116 ETKDGv3 45
CKM H2 2.745 2.609 0.291 ETKDGv3 46
CKM H3 -0.705 5.112 -0.328 ETKDGv3 47
CKM H4 -1.422 3.738 -2.195 ETKDGv3 48
CKM H5 -0.054 1.711 -2.888 ETKDGv3 49
CKM H6 2.726 -1.392 2.974 ETKDGv3 50
CKM H7 1.703 -2.505 2.063 ETKDGv3 51
CKM H8 -2.822 -1.419 3.478 ETKDGv3 52
CKM H9 -0.261 -2.507 1.039 ETKDGv3 53
CKM H10 -3.936 -2.682 -0.048 ETKDGv3 54
CKM H11 -2.408 -3.310 -0.733 ETKDGv3 55
CKM H12 1.436 4.531 0.936 ETKDGv3 56
CKM H13 -2.422 0.155 5.381 ETKDGv3 57
CKM H14 -0.780 0.958 0.251 ETKDGv3 58
CKM H15 -4.752 -0.665 0.876 ETKDGv3 59
CKM H16 -5.188 -1.150 -1.343 ETKDGv3 60
CKM H17 -1.163 -0.471 -2.821 ETKDGv3 61
CKM H18 -0.205 1.005 5.830 ETKDGv3 62
CKM H19 -1.226 2.717 1.834 ETKDGv3 63
CKM H20 -5.206 1.204 2.510 ETKDGv3 64
CKM H21 -6.091 -0.620 -3.503 ETKDGv3 65
CKM H22 -2.142 0.079 -5.084 ETKDGv3 66
CKM H23 5.827 -1.984 -1.590 ETKDGv3 67
CKM H24 5.079 -1.228 -3.027 ETKDGv3 68
CKM H25 2.292 -2.707 -0.290 ETKDGv3 69
CKM H26 3.989 -2.885 0.244 ETKDGv3 70
CKM H27 5.617 -0.132 -0.329 ETKDGv3 71
CKM H28 5.196 2.110 -1.537 ETKDGv3 72
CKM H29 6.617 1.092 -1.958 ETKDGv3 73
CKM H30 5.221 1.127 -3.056 ETKDGv3 74
CKM H31 1.049 -0.655 0.487 ETKDGv3 75
CKM H32 1.967 0.523 1.474 ETKDGv3 76
CKM H33 -1.340 -1.161 -0.650 ETKDGv3 77
CKM H34 3.880 -3.143 -2.073 ETKDGv3 78
#