data_CLR
#
_chem_comp.id CLR
_chem_comp.name CHOLESTEROL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C27 H46 O'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-05-16
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 386.654
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CLR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1LRI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CLR C1 C1 C 0 1 N N N N N N 7.375 11.573 2.719 1.300 -1.004 -4.518 C1 CLR 1
CLR C2 C2 C 0 1 N N N N N N 7.708 12.020 1.294 1.651 -0.336 -5.850 C2 CLR 2
CLR C3 C3 C 0 1 N N S N N N 6.704 11.477 0.256 0.368 0.011 -6.606 C3 CLR 3
CLR C4 C4 C 0 1 N N N N N N 5.290 11.925 0.686 -0.434 1.041 -5.806 C4 CLR 4
CLR C5 C5 C 0 1 N N N N N N 4.910 11.585 2.121 -0.671 0.485 -4.412 C5 CLR 5
CLR C6 C6 C 0 1 N N N N N N 3.730 10.985 2.364 -1.887 0.476 -3.951 C6 CLR 6
CLR C7 C7 C 0 1 N N N N N N 3.282 10.583 3.776 -2.243 -0.054 -2.593 C7 CLR 7
CLR C8 C8 C 0 1 N N S N N N 4.135 11.297 4.864 -1.026 0.068 -1.670 C8 CLR 8
CLR C9 C9 C 0 1 N N S N N N 5.646 11.220 4.495 0.164 -0.655 -2.313 C9 CLR 9
CLR C10 C10 C 0 1 N N R N N N 5.956 11.983 3.184 0.516 -0.018 -3.647 C10 CLR 10
CLR C11 C11 C 0 1 N N N N N N 6.562 11.606 5.668 1.395 -0.674 -1.410 C11 CLR 11
CLR C12 C12 C 0 1 N N N N N N 6.230 10.865 6.976 1.072 -1.238 -0.018 C12 CLR 12
CLR C13 C13 C 0 1 N N R N N N 4.747 11.133 7.362 -0.084 -0.430 0.572 C13 CLR 13
CLR C14 C14 C 0 1 N N S N N N 3.901 10.577 6.172 -1.320 -0.619 -0.349 C14 CLR 14
CLR C15 C15 C 0 1 N N N N N N 2.423 10.515 6.686 -2.437 0.005 0.494 C15 CLR 15
CLR C16 C16 C 0 1 N N N N N N 2.603 10.254 8.244 -2.120 -0.507 1.925 C16 CLR 16
CLR C17 C17 C 0 1 N N R N N N 4.184 10.213 8.492 -0.607 -0.839 1.946 C17 CLR 17
CLR C18 C18 C 0 1 N N N N N N 4.427 12.609 7.643 0.266 1.058 0.566 C18 CLR 18
CLR C19 C19 C 0 1 N N N N N N 5.904 13.519 3.455 1.426 1.172 -3.340 C19 CLR 19
CLR C20 C20 C 0 1 N N R N N N 4.485 10.635 9.927 0.095 -0.036 3.041 C20 CLR 20
CLR C21 C21 C 0 1 N N N N N N 5.984 10.768 10.284 1.597 -0.326 3.002 C21 CLR 21
CLR C22 C22 C 0 1 N N N N N N 3.880 9.480 10.796 -0.465 -0.436 4.407 C22 CLR 22
CLR C23 C23 C 0 1 N N N N N N 3.871 9.810 12.292 0.238 0.366 5.503 C23 CLR 23
CLR C24 C24 C 0 1 N N N N N N 2.942 8.704 12.917 -0.323 -0.034 6.869 C24 CLR 24
CLR C25 C25 C 0 1 N N N N N N 2.687 9.037 14.404 0.380 0.768 7.965 C25 CLR 25
CLR C26 C26 C 0 1 N N N N N N 4.072 9.088 15.104 -0.180 0.368 9.331 C26 CLR 26
CLR C27 C27 C 0 1 N N N N N N 1.649 8.119 15.096 1.882 0.478 7.926 C27 CLR 27
CLR O1 O1 O 0 1 N N N N N N 7.001 11.833 -1.087 0.702 0.556 -7.885 O1 CLR 28
CLR H11 1H1 H 0 1 N N N N N N 8.146 11.940 3.437 0.692 -1.889 -4.705 H11 CLR 29
CLR H12 2H1 H 0 1 N N N N N N 7.524 10.474 2.831 2.217 -1.294 -4.005 H12 CLR 30
CLR H21 1H2 H 0 1 N N N N N N 8.754 11.747 1.022 2.253 -1.017 -6.450 H21 CLR 31
CLR H22 2H2 H 0 1 N N N N N N 7.791 13.130 1.230 2.218 0.575 -5.660 H22 CLR 32
CLR H3 H3 H 0 1 N N N N N N 6.774 10.364 0.249 -0.229 -0.890 -6.741 H3 CLR 33
CLR H41 1H4 H 0 1 N N N N N N 4.528 11.518 -0.019 -1.390 1.223 -6.296 H41 CLR 34
CLR H42 2H4 H 0 1 N N N N N N 5.162 13.018 0.504 0.128 1.972 -5.739 H42 CLR 35
CLR H6 H6 H 0 1 N N N N N N 3.151 10.828 1.439 -2.677 0.868 -4.574 H6 CLR 36
CLR H71 1H7 H 0 1 N N N N N N 3.292 9.476 3.909 -2.533 -1.102 -2.676 H71 CLR 37
CLR H72 2H7 H 0 1 N N N N N N 2.192 10.764 3.927 -3.071 0.522 -2.182 H72 CLR 38
CLR H8 H8 H 0 1 N N N N N N 3.844 12.371 4.941 -0.784 1.117 -1.503 H8 CLR 39
CLR H9 H9 H 0 1 N N N N N N 5.881 10.150 4.289 -0.144 -1.684 -2.495 H9 CLR 40
CLR H111 1H11 H 0 0 N N N N N N 6.556 12.710 5.827 2.165 -1.291 -1.873 H111 CLR 41
CLR H112 2H11 H 0 0 N N N N N N 7.634 11.464 5.395 1.772 0.342 -1.303 H112 CLR 42
CLR H121 1H12 H 0 0 N N N N N N 6.934 11.128 7.800 0.736 -2.271 -0.105 H121 CLR 43
CLR H122 2H12 H 0 0 N N N N N N 6.459 9.776 6.913 1.955 -1.186 0.617 H122 CLR 44
CLR H14 H14 H 0 1 N N N N N N 4.222 9.550 5.881 -1.515 -1.679 -0.509 H14 CLR 45
CLR H151 1H15 H 0 0 N N N N N N 1.777 9.774 6.160 -3.413 -0.348 0.164 H151 CLR 46
CLR H152 2H15 H 0 0 N N N N N N 1.802 11.405 6.431 -2.386 1.094 0.454 H152 CLR 47
CLR H161 1H16 H 0 0 N N N N N N 2.068 9.347 8.611 -2.703 -1.404 2.138 H161 CLR 48
CLR H162 2H16 H 0 0 N N N N N N 2.068 10.991 8.887 -2.344 0.266 2.658 H162 CLR 49
CLR H17 H17 H 0 1 N N N N N N 4.668 9.211 8.422 -0.457 -1.907 2.105 H17 CLR 50
CLR H181 1H18 H 0 0 N N N N N N 4.726 13.245 6.777 0.546 1.361 -0.442 H181 CLR 51
CLR H182 2H18 H 0 0 N N N N N N 3.364 12.801 7.920 -0.598 1.636 0.893 H182 CLR 52
CLR H183 3H18 H 0 0 N N N N N N 5.113 13.016 8.423 1.100 1.238 1.245 H183 CLR 53
CLR H191 1H19 H 0 0 N N N N N N 6.241 14.110 2.572 1.618 1.728 -4.258 H191 CLR 54
CLR H192 2H19 H 0 0 N N N N N N 4.882 13.814 3.790 0.938 1.824 -2.616 H192 CLR 55
CLR H193 3H19 H 0 0 N N N N N N 6.690 13.842 4.177 2.369 0.812 -2.928 H193 CLR 56
CLR H20 H20 H 0 1 N N N N N N 4.062 11.653 10.097 -0.073 1.028 2.877 H20 CLR 57
CLR H211 1H21 H 0 0 N N N N N N 6.486 11.462 9.570 1.766 -1.390 3.166 H211 CLR 58
CLR H212 2H21 H 0 0 N N N N N N 6.204 11.076 11.333 1.997 -0.040 2.029 H212 CLR 59
CLR H213 3H21 H 0 0 N N N N N N 6.518 9.819 10.046 2.098 0.245 3.783 H213 CLR 60
CLR H221 1H22 H 0 0 N N N N N N 4.405 8.516 10.602 -0.296 -1.501 4.572 H221 CLR 61
CLR H222 2H22 H 0 0 N N N N N N 2.860 9.204 10.441 -1.535 -0.230 4.435 H222 CLR 62
CLR H231 1H23 H 0 0 N N N N N N 3.565 10.855 12.530 0.069 1.430 5.339 H231 CLR 63
CLR H232 2H23 H 0 0 N N N N N N 4.884 9.874 12.754 1.307 0.159 5.475 H232 CLR 64
CLR H241 1H24 H 0 0 N N N N N N 3.353 7.677 12.777 -0.154 -1.098 7.033 H241 CLR 65
CLR H242 2H24 H 0 0 N N N N N N 1.995 8.573 12.344 -1.393 0.172 6.897 H242 CLR 66
CLR H25 H25 H 0 1 N N N N N N 2.191 10.032 14.487 0.211 1.833 7.801 H25 CLR 67
CLR H261 1H26 H 0 0 N N N N N N 4.784 9.792 14.614 0.320 0.940 10.112 H261 CLR 68
CLR H262 2H26 H 0 0 N N N N N N 3.888 9.328 16.177 -1.250 0.575 9.359 H262 CLR 69
CLR H263 3H26 H 0 0 N N N N N N 4.669 8.158 14.960 -0.012 -0.696 9.495 H263 CLR 70
CLR H271 1H27 H 0 0 N N N N N N 1.939 7.049 14.981 2.050 -0.585 8.090 H271 CLR 71
CLR H272 2H27 H 0 0 N N N N N N 1.465 8.359 16.169 2.281 0.764 6.953 H272 CLR 72
CLR H273 3H27 H 0 0 N N N N N N 0.690 8.119 14.528 2.383 1.050 8.706 H273 CLR 73
CLR H1 H1 H 0 1 N N N N N N 6.383 11.499 -1.726 -0.132 0.760 -8.328 H1 CLR 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CLR C1 C2 SING N N 1
CLR C1 C10 SING N N 2
CLR C1 H11 SING N N 3
CLR C1 H12 SING N N 4
CLR C2 C3 SING N N 5
CLR C2 H21 SING N N 6
CLR C2 H22 SING N N 7
CLR C3 C4 SING N N 8
CLR C3 O1 SING N N 9
CLR C3 H3 SING N N 10
CLR C4 C5 SING N N 11
CLR C4 H41 SING N N 12
CLR C4 H42 SING N N 13
CLR C5 C6 DOUB N N 14
CLR C5 C10 SING N N 15
CLR C6 C7 SING N N 16
CLR C6 H6 SING N N 17
CLR C7 C8 SING N N 18
CLR C7 H71 SING N N 19
CLR C7 H72 SING N N 20
CLR C8 C9 SING N N 21
CLR C8 C14 SING N N 22
CLR C8 H8 SING N N 23
CLR C9 C10 SING N N 24
CLR C9 C11 SING N N 25
CLR C9 H9 SING N N 26
CLR C10 C19 SING N N 27
CLR C11 C12 SING N N 28
CLR C11 H111 SING N N 29
CLR C11 H112 SING N N 30
CLR C12 C13 SING N N 31
CLR C12 H121 SING N N 32
CLR C12 H122 SING N N 33
CLR C13 C14 SING N N 34
CLR C13 C17 SING N N 35
CLR C13 C18 SING N N 36
CLR C14 C15 SING N N 37
CLR C14 H14 SING N N 38
CLR C15 C16 SING N N 39
CLR C15 H151 SING N N 40
CLR C15 H152 SING N N 41
CLR C16 C17 SING N N 42
CLR C16 H161 SING N N 43
CLR C16 H162 SING N N 44
CLR C17 C20 SING N N 45
CLR C17 H17 SING N N 46
CLR C18 H181 SING N N 47
CLR C18 H182 SING N N 48
CLR C18 H183 SING N N 49
CLR C19 H191 SING N N 50
CLR C19 H192 SING N N 51
CLR C19 H193 SING N N 52
CLR C20 C21 SING N N 53
CLR C20 C22 SING N N 54
CLR C20 H20 SING N N 55
CLR C21 H211 SING N N 56
CLR C21 H212 SING N N 57
CLR C21 H213 SING N N 58
CLR C22 C23 SING N N 59
CLR C22 H221 SING N N 60
CLR C22 H222 SING N N 61
CLR C23 C24 SING N N 62
CLR C23 H231 SING N N 63
CLR C23 H232 SING N N 64
CLR C24 C25 SING N N 65
CLR C24 H241 SING N N 66
CLR C24 H242 SING N N 67
CLR C25 C26 SING N N 68
CLR C25 C27 SING N N 69
CLR C25 H25 SING N N 70
CLR C26 H261 SING N N 71
CLR C26 H262 SING N N 72
CLR C26 H263 SING N N 73
CLR C27 H271 SING N N 74
CLR C27 H272 SING N N 75
CLR C27 H273 SING N N 76
CLR O1 H1 SING N N 77
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CLR SMILES ACDLabs 10.04 'OC4CCC3(C(=CCC2C1C(C(C(C)CCCC(C)C)CC1)(C)CCC23)C4)C'
CLR SMILES_CANONICAL CACTVS 3.341 'CC(C)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4C[C@@H](O)CC[C@]4(C)[C@H]3CC[C@]12C'
CLR SMILES CACTVS 3.341 'CC(C)CCC[CH](C)[CH]1CC[CH]2[CH]3CC=C4C[CH](O)CC[C]4(C)[CH]3CC[C]12C'
CLR SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'CC(C)CCC[C@@H](C)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CC=C4[C@@]3(CC[C@@H](C4)O)C)C'
CLR SMILES 'OpenEye OEToolkits' 1.5.0 'CC(C)CCCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C'
CLR InChI InChI 1.03 'InChI=1S/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h9,18-19,21-25,28H,6-8,10-17H2,1-5H3/t19-,21+,22+,23-,24+,25+,26+,27-/m1/s1'
CLR InChIKey InChI 1.03 HVYWMOMLDIMFJA-DPAQBDIFSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CLR 'SYSTEMATIC NAME' ACDLabs 10.04 '(3beta,14beta,17alpha)-cholest-5-en-3-ol'
CLR 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '(3S,8S,9S,10R,13R,14S,17R)-10,13-dimethyl-17-[(2R)-6-methylheptan-2-yl]-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-3-ol'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CLR 'Create component' 2002-05-16 RCSB
CLR 'Modify descriptor' 2011-06-04 RCSB
CLR 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id CLR
_pdbx_chem_comp_pcm.modified_residue_id GLY
_pdbx_chem_comp_pcm.type Cholesterylation
_pdbx_chem_comp_pcm.category Lipid/lipid-like
_pdbx_chem_comp_pcm.position 'Amino-acid backbone'
_pdbx_chem_comp_pcm.polypeptide_position C-terminal
_pdbx_chem_comp_pcm.comp_id_linking_atom O1
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom C
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0090
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id CLR
_pdbe_chem_comp_drugbank_details.drugbank_id DB04540
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Cholesterol
_pdbe_chem_comp_drugbank_details.description
'The principal sterol of all higher animals, distributed in body tissues, especially the brain and spinal cord, and in animal fats and oils.'
_pdbe_chem_comp_drugbank_details.cas_number 57-88-5
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
CLR '(3β,14β,17α)-cholest-5-en-3-ol' DrugBank ?
CLR Cholest-5-en-3beta-ol DrugBank ?
CLR Cholesterin DrugBank ?
CLR Cholesterol DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CLR
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04540
_pdbe_chem_comp_drugbank_classification.parent 'Cholesterols and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Steroids and steroid derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Lipids and lipid-like molecules'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as cholesterols and derivatives. These are compounds containing a 3-hydroxylated cholestane core.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
CLR DB04540 'Choline-phosphate cytidylyltransferase B' Humans Q9Y5K3 yes 1
CLR DB04540 'Nuclear receptor subfamily 1 group I member 3' Humans Q14994 unknown 2
CLR DB04540 'Vitamin D3 receptor' Humans P11473 unknown 3
CLR DB04540 'C-type lectin domain family 4 member E' Humans Q9ULY5 unknown 4
CLR DB04540 'Nuclear receptor ROR-alpha' Humans P35398 unknown 5
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CLR C1 C 6.540 -2.325 1
CLR C2 C 5.118 -3.117 2
CLR C3 C 5.106 -4.745 3
CLR C4 C 6.515 -5.558 4
CLR C5 C 7.918 -4.734 5
CLR C6 C 9.271 -5.515 6
CLR C7 C 10.618 -4.723 7
CLR C8 C 10.594 -3.161 8
CLR C9 C 9.295 -2.411 9
CLR C10 C 7.930 -3.171 10
CLR C11 C 9.295 -0.911 11
CLR C12 C 10.594 -0.161 12
CLR C13 C 11.893 -0.911 13
CLR C14 C 11.893 -2.411 14
CLR C15 C 13.312 -2.868 15
CLR C16 C 14.188 -1.661 16
CLR C17 C 13.312 -0.454 17
CLR C18 C 11.893 0.589 18
CLR C19 C 7.942 -1.671 19
CLR C20 C 13.779 0.972 20
CLR C21 C 12.777 2.088 21
CLR C22 C 15.246 1.281 22
CLR C23 C 15.712 2.707 23
CLR C24 C 17.180 3.016 24
CLR C25 C 17.646 4.442 25
CLR C26 C 19.114 4.751 26
CLR C27 C 16.644 5.558 27
CLR O1 O 3.804 -5.490 28
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CLR C1 C2 SINGLE NONE 1
CLR C1 C10 SINGLE NONE 2
CLR C2 C3 SINGLE NONE 3
CLR C3 C4 SINGLE NONE 4
CLR C3 O1 SINGLE BEGINWEDGE 5
CLR C4 C5 SINGLE NONE 6
CLR C5 C6 DOUBLE NONE 7
CLR C5 C10 SINGLE NONE 8
CLR C6 C7 SINGLE NONE 9
CLR C7 C8 SINGLE NONE 10
CLR C8 C9 SINGLE NONE 11
CLR C8 C14 SINGLE NONE 12
CLR C9 C10 SINGLE NONE 13
CLR C9 C11 SINGLE NONE 14
CLR C10 C19 SINGLE BEGINWEDGE 15
CLR C11 C12 SINGLE NONE 16
CLR C12 C13 SINGLE NONE 17
CLR C13 C14 SINGLE NONE 18
CLR C13 C17 SINGLE NONE 19
CLR C13 C18 SINGLE BEGINWEDGE 20
CLR C14 C15 SINGLE NONE 21
CLR C15 C16 SINGLE NONE 22
CLR C17 C16 SINGLE BEGINWEDGE 23
CLR C17 C20 SINGLE NONE 24
CLR C20 C21 SINGLE BEGINDASH 25
CLR C20 C22 SINGLE NONE 26
CLR C22 C23 SINGLE NONE 27
CLR C23 C24 SINGLE NONE 28
CLR C24 C25 SINGLE NONE 29
CLR C25 C26 SINGLE NONE 30
CLR C25 C27 SINGLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CLR MurckoScaffold S1 scaffold 'C1=C2CCCCC2[C@H]2CCC3CCC[C@H]3[C@@H]2C1' InChI=1S/C17H26/c1-2-6-14-12(4-1)8-10-17-15-7-3-5-13(15)9-11-16(14)17/h8,13-17H,1-7,9-11H2/t13-,14-,15+,16+,17-/m0/s1 CBKAHYBYIWZZPP-SIRPWMCASA-N
CLR cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
CLR cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
CLR steroid-like F3 fragment C1~C~C~C2~C(~C~1)~C~C~C1~C3~C~C~C~C~3~C~C~C~2~1 ? ?
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CLR C1 S1 1
CLR C2 S1 1
CLR C3 S1 1
CLR C4 S1 1
CLR C5 S1 1
CLR C6 S1 1
CLR C7 S1 1
CLR C8 S1 1
CLR C9 S1 1
CLR C10 S1 1
CLR C11 S1 1
CLR C12 S1 1
CLR C13 S1 1
CLR C14 S1 1
CLR C15 S1 1
CLR C16 S1 1
CLR C17 S1 1
CLR C1 F1 1
CLR C2 F1 1
CLR C3 F1 1
CLR C4 F1 1
CLR C5 F1 1
CLR C10 F1 1
CLR C8 F1 2
CLR C9 F1 2
CLR C11 F1 2
CLR C12 F1 2
CLR C13 F1 2
CLR C14 F1 2
CLR C13 F2 1
CLR C14 F2 1
CLR C15 F2 1
CLR C16 F2 1
CLR C17 F2 1
CLR C2 F3 1
CLR C3 F3 1
CLR C4 F3 1
CLR C5 F3 1
CLR C10 F3 1
CLR C1 F3 1
CLR C9 F3 1
CLR C8 F3 1
CLR C7 F3 1
CLR C6 F3 1
CLR C14 F3 1
CLR C13 F3 1
CLR C12 F3 1
CLR C11 F3 1
CLR C17 F3 1
CLR C16 F3 1
CLR C15 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CLR
_pdbe_chem_comp_rdkit_properties.exactmw 386.355
_pdbe_chem_comp_rdkit_properties.amw 386.664
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 28
_pdbe_chem_comp_rdkit_properties.NumAtoms 74
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.926
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 8
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 239.024
_pdbe_chem_comp_rdkit_properties.tpsa 20.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 7.389
_pdbe_chem_comp_rdkit_properties.CrippenMR 119.053
_pdbe_chem_comp_rdkit_properties.chi0v 13.908
_pdbe_chem_comp_rdkit_properties.chi1v 7.704
_pdbe_chem_comp_rdkit_properties.chi2v 4.227
_pdbe_chem_comp_rdkit_properties.chi3v 4.227
_pdbe_chem_comp_rdkit_properties.chi4v 2.920
_pdbe_chem_comp_rdkit_properties.chi0n 59.908
_pdbe_chem_comp_rdkit_properties.chi1n 30.612
_pdbe_chem_comp_rdkit_properties.chi2n 4.227
_pdbe_chem_comp_rdkit_properties.chi3n 4.227
_pdbe_chem_comp_rdkit_properties.chi4n 2.920
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.300
_pdbe_chem_comp_rdkit_properties.kappa1 3.357
_pdbe_chem_comp_rdkit_properties.kappa2 7.751
_pdbe_chem_comp_rdkit_properties.kappa3 3.421
_pdbe_chem_comp_rdkit_properties.Phi 0.929
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CLR UniChem ChEMBL CHEMBL112570
CLR UniChem DrugBank DB04540
CLR UniChem 'Guide to Pharmacology' 2718
CLR UniChem 'KEGG LIGAND' C00187
CLR UniChem ChEBI 16113
CLR UniChem ZINC ZINC000003875383
CLR UniChem eMolecules 29535203
CLR UniChem eMolecules 29536225
CLR UniChem eMolecules 482145
CLR UniChem atlas cholesterol
CLR UniChem fdasrs 97C5T2UQ7J
CLR UniChem SureChEMBL SCHEMBL2156
CLR UniChem HMDB HMDB0000067
CLR UniChem Selleck cholesterol
CLR UniChem 'PubChem TPHARMA' 14927473
CLR UniChem 'PubChem TPHARMA' 15054036
CLR UniChem NMRShiftDB 60018435
CLR UniChem Recon chsterol
CLR UniChem BindingDb 20192
CLR UniChem 'EPA CompTox Dashboard' DTXSID3022401
CLR UniChem MetaboLights MTBLC16113
CLR UniChem BRENDA 10614
CLR UniChem BRENDA 108772
CLR UniChem BRENDA 189
CLR UniChem BRENDA 224798
CLR UniChem BRENDA 229269
CLR UniChem BRENDA 229270
CLR UniChem Rhea 16113
CLR UniChem ChemicalBook CB7383339
CLR UniChem DailyMed CHOLESTEROL
CLR UniChem ClinicalTrials CHOLESTEROL
CLR UniChem rxnorm CHOLESTEROL
CLR UniChem MedChemExpress HY-N0322
CLR UniChem 'Probes And Drugs' PD011961
CLR UniChem CCDC CHOEST
CLR UniChem Nikkaji J2.804E
CLR UniChem PubChem 5997
CLR UniChem Mcule MCULE-6413140986
CLR UniChem ACTor 209124-38-9
CLR UniChem ACTor 22243-67-0
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CLR C1 -3.573 2.339 -0.328 ETKDGv3 1
CLR C2 -4.727 2.772 -1.246 ETKDGv3 2
CLR C3 -6.055 2.133 -0.831 ETKDGv3 3
CLR C4 -5.985 0.602 -0.969 ETKDGv3 4
CLR C5 -4.587 0.031 -0.785 ETKDGv3 5
CLR C6 -4.360 -1.212 -1.265 ETKDGv3 6
CLR C7 -3.004 -1.854 -1.315 ETKDGv3 7
CLR C8 -2.053 -1.317 -0.236 ETKDGv3 8
CLR C9 -2.086 0.241 -0.249 ETKDGv3 9
CLR C10 -3.534 0.804 0.033 ETKDGv3 10
CLR C11 -0.978 0.863 0.663 ETKDGv3 11
CLR C12 0.428 0.273 0.404 ETKDGv3 12
CLR C13 0.423 -1.274 0.520 ETKDGv3 13
CLR C14 -0.604 -1.780 -0.512 ETKDGv3 14
CLR C15 -0.328 -3.267 -0.646 ETKDGv3 15
CLR C16 1.201 -3.363 -0.553 ETKDGv3 16
CLR C17 1.707 -1.999 -0.000 ETKDGv3 17
CLR C18 0.085 -1.701 1.978 ETKDGv3 18
CLR C19 -3.915 0.621 1.529 ETKDGv3 19
CLR C20 3.012 -2.119 0.876 ETKDGv3 20
CLR C21 2.922 -3.005 2.140 ETKDGv3 21
CLR C22 3.655 -0.764 1.258 ETKDGv3 22
CLR C23 4.075 0.090 0.050 ETKDGv3 23
CLR C24 4.878 1.321 0.500 ETKDGv3 24
CLR C25 5.160 2.308 -0.656 ETKDGv3 25
CLR C26 5.745 3.613 -0.101 ETKDGv3 26
CLR C27 6.115 1.711 -1.700 ETKDGv3 27
CLR O1 -6.389 2.491 0.485 ETKDGv3 28
CLR H11 -2.643 2.657 -0.845 ETKDGv3 29
CLR H12 -3.615 2.959 0.594 ETKDGv3 30
CLR H21 -4.821 3.880 -1.224 ETKDGv3 31
CLR H22 -4.494 2.481 -2.295 ETKDGv3 32
CLR H3 -6.854 2.502 -1.517 ETKDGv3 33
CLR H41 -6.682 0.117 -0.251 ETKDGv3 34
CLR H42 -6.339 0.346 -1.993 ETKDGv3 35
CLR H6 -5.158 -1.733 -1.787 ETKDGv3 36
CLR H71 -2.581 -1.673 -2.327 ETKDGv3 37
CLR H72 -3.128 -2.951 -1.188 ETKDGv3 38
CLR H8 -2.399 -1.722 0.734 ETKDGv3 39
CLR H9 -1.824 0.546 -1.290 ETKDGv3 40
CLR H111 -1.220 0.727 1.734 ETKDGv3 41
CLR H112 -0.920 1.958 0.494 ETKDGv3 42
CLR H121 0.760 0.585 -0.611 ETKDGv3 43
CLR H122 1.130 0.723 1.132 ETKDGv3 44
CLR H14 -0.334 -1.348 -1.508 ETKDGv3 45
CLR H151 -0.809 -3.831 0.183 ETKDGv3 46
CLR H152 -0.694 -3.663 -1.619 ETKDGv3 47
CLR H161 1.629 -3.541 -1.564 ETKDGv3 48
CLR H162 1.474 -4.234 0.070 ETKDGv3 49
CLR H17 2.023 -1.443 -0.911 ETKDGv3 50
CLR H181 -0.935 -1.419 2.292 ETKDGv3 51
CLR H182 0.763 -1.188 2.688 ETKDGv3 52
CLR H183 0.166 -2.799 2.114 ETKDGv3 53
CLR H191 -3.311 1.273 2.193 ETKDGv3 54
CLR H192 -3.792 -0.429 1.861 ETKDGv3 55
CLR H193 -4.974 0.885 1.712 ETKDGv3 56
CLR H20 3.750 -2.635 0.220 ETKDGv3 57
CLR H211 2.545 -2.442 3.016 ETKDGv3 58
CLR H212 3.941 -3.356 2.412 ETKDGv3 59
CLR H213 2.301 -3.908 2.006 ETKDGv3 60
CLR H221 4.572 -0.973 1.854 ETKDGv3 61
CLR H222 2.978 -0.190 1.921 ETKDGv3 62
CLR H231 3.178 0.437 -0.500 ETKDGv3 63
CLR H232 4.695 -0.531 -0.631 ETKDGv3 64
CLR H241 4.291 1.850 1.284 ETKDGv3 65
CLR H242 5.837 0.994 0.959 ETKDGv3 66
CLR H25 4.200 2.558 -1.160 ETKDGv3 67
CLR H261 6.710 3.420 0.416 ETKDGv3 68
CLR H262 5.038 4.076 0.620 ETKDGv3 69
CLR H263 5.918 4.339 -0.924 ETKDGv3 70
CLR H271 7.058 1.371 -1.221 ETKDGv3 71
CLR H272 6.361 2.469 -2.474 ETKDGv3 72
CLR H273 5.641 0.853 -2.220 ETKDGv3 73
CLR H1 -6.656 3.447 0.465 ETKDGv3 74
#