data_CM5
#
_chem_comp.id CM5
_chem_comp.name 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H42 O11"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE; CYMAL-5"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-10-27
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 494.573
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CM5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2BDM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CM5 C7 C7 C 0 1 N N N N N N 95.194 36.050 15.024 9.533 0.953 -1.391 C7 CM5 1
CM5 C8 C8 C 0 1 N N N N N N 95.165 35.396 16.408 10.966 0.759 -0.891 C8 CM5 2
CM5 C9 C9 C 0 1 N N N N N N 96.584 35.215 16.953 11.086 1.301 0.535 C9 CM5 3
CM5 C10 C10 C 0 1 N N N N N N 97.319 36.557 16.994 10.120 0.547 1.450 C10 CM5 4
CM5 C11 C11 C 0 1 N N N N N N 97.346 37.199 15.604 8.687 0.741 0.950 C11 CM5 5
CM5 C6 C6 C 0 1 N N N N N N 95.922 37.395 15.074 8.567 0.199 -0.476 C6 CM5 6
CM5 C5 C5 C 0 1 N N N N N N 95.953 38.042 13.688 7.134 0.393 -0.976 C5 CM5 7
CM5 C4 C4 C 0 1 N N N N N N 94.551 38.520 13.302 6.180 -0.460 -0.137 C4 CM5 8
CM5 C3 C3 C 0 1 N N N N N N 94.469 39.110 11.893 4.748 -0.265 -0.637 C3 CM5 9
CM5 C2 C2 C 0 1 N N N N N N 95.357 40.341 11.698 3.794 -1.118 0.202 C2 CM5 10
CM5 C1 C1 C 0 1 N N N N N N 94.758 41.235 10.610 2.362 -0.924 -0.299 C1 CM5 11
CM5 O12 O12 O 0 1 N N N N N N 93.541 41.770 11.152 1.471 -1.721 0.485 O12 CM5 12
CM5 C13 C13 C 0 1 N N R N N N 92.651 42.279 10.148 0.156 -1.497 -0.028 C13 CM5 13
CM5 C18 C18 C 0 1 N N R N N N 91.363 42.723 10.848 -0.833 -2.418 0.689 C18 CM5 14
CM5 O22 O22 O 0 1 N N N N N N 90.728 41.578 11.423 -0.448 -3.781 0.494 O22 CM5 15
CM5 C17 C17 C 0 1 N N R N N N 90.406 43.380 9.851 -2.234 -2.194 0.109 C17 CM5 16
CM5 O21 O21 O 0 1 N N N N N N 89.314 43.964 10.564 -3.194 -2.934 0.866 O21 CM5 17
CM5 O14 O14 O 0 1 N N N N N N 93.234 43.381 9.431 -0.209 -0.135 0.186 O14 CM5 18
CM5 C15 C15 C 0 1 N N R N N N 92.353 43.867 8.404 -1.443 0.095 -0.493 C15 CM5 19
CM5 C19 C19 C 0 1 N N N N N N 93.072 44.890 7.520 -1.777 1.587 -0.450 C19 CM5 20
CM5 O20 O20 O 0 1 N N N N N N 93.504 46.000 8.312 -0.776 2.320 -1.159 O20 CM5 21
CM5 C16 C16 C 0 1 N N S N N N 91.113 44.474 9.046 -2.563 -0.699 0.184 C16 CM5 22
CM5 O23 O23 O 0 1 N N N N N N 90.209 44.992 8.058 -3.800 -0.446 -0.485 O23 CM5 23
CM5 C24 C24 C 0 1 N N R N N N 89.449 46.089 8.590 -4.840 -0.687 0.464 C24 CM5 24
CM5 O25 O25 O 0 1 N N N N N N 90.123 47.323 8.293 -4.893 0.394 1.394 O25 CM5 25
CM5 C26 C26 C 0 1 N N R N N N 90.354 47.527 6.887 -4.981 1.604 0.644 C26 CM5 26
CM5 C30 C30 C 0 1 N N N N N N 91.042 48.887 6.745 -4.847 2.799 1.590 C30 CM5 27
CM5 O31 O31 O 0 1 N N N N N N 91.317 49.163 5.369 -3.541 2.804 2.170 O31 CM5 28
CM5 C27 C27 C 0 1 N N S N N N 89.031 47.538 6.115 -6.331 1.671 -0.073 C27 CM5 29
CM5 O32 O32 O 0 1 N N N N N N 89.293 47.557 4.709 -6.426 2.898 -0.800 O32 CM5 30
CM5 C28 C28 C 0 1 N N S N N N 88.208 46.287 6.432 -6.440 0.490 -1.044 C28 CM5 31
CM5 O33 O33 O 0 1 N N N N N N 86.916 46.408 5.831 -7.751 0.452 -1.612 O33 CM5 32
CM5 C29 C29 C 0 1 N N R N N N 88.061 46.125 7.946 -6.178 -0.806 -0.269 C29 CM5 33
CM5 O34 O34 O 0 1 N N N N N N 87.349 44.922 8.244 -6.129 -1.908 -1.178 O34 CM5 34
CM5 H71 1H7 H 0 1 N N N N N N 94.170 36.151 14.594 9.448 0.567 -2.407 H71 CM5 35
CM5 H72 2H7 H 0 1 N N N N N N 95.633 35.371 14.256 9.287 2.015 -1.384 H72 CM5 36
CM5 H81 1H8 H 0 1 N N N N N N 94.601 34.434 16.398 11.212 -0.303 -0.898 H81 CM5 37
CM5 H82 2H8 H 0 1 N N N N N N 94.519 35.963 17.119 11.655 1.296 -1.543 H82 CM5 38
CM5 H91 1H9 H 0 1 N N N N N N 97.154 34.448 16.378 12.107 1.162 0.891 H91 CM5 39
CM5 H92 2H9 H 0 1 N N N N N N 96.585 34.712 17.948 10.840 2.362 0.542 H92 CM5 40
CM5 H101 1H10 H 0 0 N N N N N N 98.343 36.455 17.423 10.366 -0.515 1.443 H101 CM5 41
CM5 H102 2H10 H 0 0 N N N N N N 96.886 37.243 17.759 10.205 0.933 2.466 H102 CM5 42
CM5 H111 1H11 H 0 0 N N N N N N 97.977 36.618 14.892 8.441 1.803 0.957 H111 CM5 43
CM5 H112 2H11 H 0 0 N N N N N N 97.925 38.152 15.599 7.998 0.204 1.602 H112 CM5 44
CM5 H6 H6 H 0 1 N N N N N N 95.370 38.075 15.764 8.813 -0.863 -0.483 H6 CM5 45
CM5 H51 1H5 H 0 1 N N N N N N 96.389 37.362 12.919 7.070 0.089 -2.021 H51 CM5 46
CM5 H52 2H5 H 0 1 N N N N N N 96.706 38.862 13.626 6.857 1.444 -0.886 H52 CM5 47
CM5 H41 1H4 H 0 1 N N N N N N 94.161 39.244 14.055 6.245 -0.156 0.908 H41 CM5 48
CM5 H42 2H4 H 0 1 N N N N N N 93.807 37.700 13.429 6.458 -1.510 -0.228 H42 CM5 49
CM5 H31A 1H3 H 0 0 N N N N N N 93.412 39.337 11.620 4.683 -0.569 -1.682 H31A CM5 50
CM5 H32A 2H3 H 0 0 N N N N N N 94.695 38.334 11.125 4.471 0.785 -0.547 H32A CM5 51
CM5 H21A 1H2 H 0 0 N N N N N N 96.416 40.067 11.482 3.859 -0.814 1.246 H21A CM5 52
CM5 H22A 2H2 H 0 0 N N N N N N 95.527 40.894 12.652 4.071 -2.169 0.111 H22A CM5 53
CM5 H11 1H1 H 0 1 N N N N N N 94.616 40.712 9.636 2.297 -1.228 -1.343 H11 CM5 54
CM5 H12 2H1 H 0 1 N N N N N N 95.462 42.019 10.244 2.084 0.126 -0.208 H12 CM5 55
CM5 H13 H13 H 0 1 N N N N N N 92.441 41.481 9.399 0.143 -1.712 -1.097 H13 CM5 56
CM5 H18 H18 H 0 1 N N N N N N 91.619 43.465 11.640 -0.839 -2.189 1.754 H18 CM5 57
CM5 H22 H22 H 0 1 N N N N N N 89.929 41.853 11.857 0.437 -3.878 0.872 H22 CM5 58
CM5 H17 H17 H 0 1 N N N N N N 90.042 42.597 9.146 -2.257 -2.521 -0.931 H17 CM5 59
CM5 H21 H21 H 0 1 N N N N N N 88.720 44.372 9.945 -2.950 -3.867 0.791 H21 CM5 60
CM5 H15 H15 H 0 1 N N N N N N 92.041 43.018 7.753 -1.350 -0.226 -1.530 H15 CM5 61
CM5 H191 1H19 H 0 0 N N N N N N 92.444 45.211 6.656 -2.748 1.756 -0.914 H191 CM5 62
CM5 H192 2H19 H 0 0 N N N N N N 93.912 44.432 6.948 -1.807 1.923 0.587 H192 CM5 63
CM5 H20 H20 H 0 1 N N N N N N 93.950 46.635 7.764 -1.024 3.253 -1.108 H20 CM5 64
CM5 H16 H16 H 0 1 N N N N N N 91.424 45.320 9.703 -2.645 -0.395 1.228 H16 CM5 65
CM5 H24 H24 H 0 1 N N N N N N 89.348 45.958 9.693 -4.635 -1.614 0.999 H24 CM5 66
CM5 H26 H26 H 0 1 N N N N N N 90.981 46.704 6.472 -4.178 1.633 -0.093 H26 CM5 67
CM5 H301 1H30 H 0 0 N N N N N N 91.960 48.957 7.375 -5.595 2.724 2.379 H301 CM5 68
CM5 H302 2H30 H 0 0 N N N N N N 90.452 49.703 7.223 -5.000 3.723 1.032 H302 CM5 69
CM5 H31 H31 H 0 1 N N N N N N 91.744 50.007 5.281 -3.499 3.571 2.757 H31 CM5 70
CM5 H27 H27 H 0 1 N N N N N N 88.461 48.447 6.420 -7.137 1.618 0.659 H27 CM5 71
CM5 H32 H32 H 0 1 N N N N N N 88.473 47.564 4.230 -7.286 2.895 -1.242 H32 CM5 72
CM5 H28 H28 H 0 1 N N N N N N 88.729 45.390 6.024 -5.701 0.597 -1.837 H28 CM5 73
CM5 H33 H33 H 0 1 N N N N N N 86.405 45.632 6.028 -7.777 -0.312 -2.204 H33 CM5 74
CM5 H29 H29 H 0 1 N N N N N N 87.487 46.989 8.356 -6.977 -0.966 0.455 H29 CM5 75
CM5 H34 H34 H 0 1 N N N N N N 86.488 44.944 7.844 -5.956 -2.699 -0.649 H34 CM5 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CM5 C7 C8 SING N N 1
CM5 C7 C6 SING N N 2
CM5 C7 H71 SING N N 3
CM5 C7 H72 SING N N 4
CM5 C8 C9 SING N N 5
CM5 C8 H81 SING N N 6
CM5 C8 H82 SING N N 7
CM5 C9 C10 SING N N 8
CM5 C9 H91 SING N N 9
CM5 C9 H92 SING N N 10
CM5 C10 C11 SING N N 11
CM5 C10 H101 SING N N 12
CM5 C10 H102 SING N N 13
CM5 C11 C6 SING N N 14
CM5 C11 H111 SING N N 15
CM5 C11 H112 SING N N 16
CM5 C6 C5 SING N N 17
CM5 C6 H6 SING N N 18
CM5 C5 C4 SING N N 19
CM5 C5 H51 SING N N 20
CM5 C5 H52 SING N N 21
CM5 C4 C3 SING N N 22
CM5 C4 H41 SING N N 23
CM5 C4 H42 SING N N 24
CM5 C3 C2 SING N N 25
CM5 C3 H31A SING N N 26
CM5 C3 H32A SING N N 27
CM5 C2 C1 SING N N 28
CM5 C2 H21A SING N N 29
CM5 C2 H22A SING N N 30
CM5 C1 O12 SING N N 31
CM5 C1 H11 SING N N 32
CM5 C1 H12 SING N N 33
CM5 O12 C13 SING N N 34
CM5 C13 C18 SING N N 35
CM5 C13 O14 SING N N 36
CM5 C13 H13 SING N N 37
CM5 C18 O22 SING N N 38
CM5 C18 C17 SING N N 39
CM5 C18 H18 SING N N 40
CM5 O22 H22 SING N N 41
CM5 C17 O21 SING N N 42
CM5 C17 C16 SING N N 43
CM5 C17 H17 SING N N 44
CM5 O21 H21 SING N N 45
CM5 O14 C15 SING N N 46
CM5 C15 C19 SING N N 47
CM5 C15 C16 SING N N 48
CM5 C15 H15 SING N N 49
CM5 C19 O20 SING N N 50
CM5 C19 H191 SING N N 51
CM5 C19 H192 SING N N 52
CM5 O20 H20 SING N N 53
CM5 C16 O23 SING N N 54
CM5 C16 H16 SING N N 55
CM5 O23 C24 SING N N 56
CM5 C24 O25 SING N N 57
CM5 C24 C29 SING N N 58
CM5 C24 H24 SING N N 59
CM5 O25 C26 SING N N 60
CM5 C26 C30 SING N N 61
CM5 C26 C27 SING N N 62
CM5 C26 H26 SING N N 63
CM5 C30 O31 SING N N 64
CM5 C30 H301 SING N N 65
CM5 C30 H302 SING N N 66
CM5 O31 H31 SING N N 67
CM5 C27 O32 SING N N 68
CM5 C27 C28 SING N N 69
CM5 C27 H27 SING N N 70
CM5 O32 H32 SING N N 71
CM5 C28 O33 SING N N 72
CM5 C28 C29 SING N N 73
CM5 C28 H28 SING N N 74
CM5 O33 H33 SING N N 75
CM5 C29 O34 SING N N 76
CM5 C29 H29 SING N N 77
CM5 O34 H34 SING N N 78
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CM5 SMILES ACDLabs 10.04 O(CCCCCC1CCCCC1)C3OC(C(OC2OC(CO)C(O)C(O)C2O)C(O)C3O)CO
CM5 SMILES_CANONICAL CACTVS 3.341 OC[C@H]1O[C@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](OCCCCCC3CCCCC3)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O
CM5 SMILES CACTVS 3.341 OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](OCCCCCC3CCCCC3)O[CH]2CO)[CH](O)[CH](O)[CH]1O
CM5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1CCC(CC1)CCCCCO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O
CM5 SMILES "OpenEye OEToolkits" 1.5.0 C1CCC(CC1)CCCCCOC2C(C(C(C(O2)CO)OC3C(C(C(C(O3)CO)O)O)O)O)O
CM5 InChI InChI 1.03 InChI=1S/C23H42O11/c24-11-14-16(26)17(27)19(29)23(32-14)34-21-15(12-25)33-22(20(30)18(21)28)31-10-6-2-5-9-13-7-3-1-4-8-13/h13-30H,1-12H2/t14-,15-,16-,17+,18-,19-,20-,21-,22-,23-/m1/s1
CM5 InChIKey InChI 1.03 RVTGFZGNOSKUDA-ZNGNCRBCSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CM5 "SYSTEMATIC NAME" ACDLabs 10.04 "5-cyclohexylpentyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside"
CM5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6R)-6-(5-cyclohexylpentoxy)-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CM5 'Create component' 2005-10-27 RCSB
CM5 'Modify descriptor' 2011-06-04 RCSB
CM5 'Modify synonyms' 2020-06-05 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 CM5 "5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE" ? ?
2 CM5 CYMAL-5 ? ?
#
_pdbe_chem_comp_drugbank_details.comp_id CM5
_pdbe_chem_comp_drugbank_details.drugbank_id DB04664
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Cyclohexyl-pentyl-maltoside
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 250692-65-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
CM5 '5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE' wwPDB ?
CM5 CYMAL-5 wwPDB ?
CM5 5-cyclohexyl-1-pentyl-beta-D-maltoside DrugBank ?
CM5 CYMAL-5 DrugBank ?
CM5 CYMAL(R)-5 DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CM5
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04664
_pdbe_chem_comp_drugbank_classification.parent 'Fatty acyl glycosides of mono- and disaccharides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Fatty Acyls'
_pdbe_chem_comp_drugbank_classification.superclass 'Lipids and lipid-like molecules'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as fatty acyl glycosides of mono- and disaccharides. These are compounds composed of a mono- or disaccharide moiety linked to one hydroxyl group of a fatty alcohol or of a phosphorylated alcohol (phosphoprenols), a hydroxy fatty acid or to one carboxyl group of a fatty acid (ester linkage) or to an amino alcohol.'
#
_pdbe_chem_comp_drugbank_targets.comp_id CM5
_pdbe_chem_comp_drugbank_targets.drugbank_id DB04664
_pdbe_chem_comp_drugbank_targets.name 'Cytochrome P450 2B6'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P20813
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CM5 C7 C 7.702 8.107 1
CM5 C8 C 7.702 9.607 2
CM5 C9 C 6.404 10.357 3
CM5 C10 C 5.104 9.607 4
CM5 C11 C 5.104 8.107 5
CM5 C6 C 6.404 7.357 6
CM5 C5 C 6.404 5.857 7
CM5 C4 C 7.702 5.107 8
CM5 C3 C 7.702 3.607 9
CM5 C2 C 9.002 2.857 10
CM5 C1 C 9.002 1.357 11
CM5 O12 O 10.301 0.608 12
CM5 C13 C 10.301 -0.892 13
CM5 C18 C 11.600 -1.643 14
CM5 O22 O 12.899 -0.892 15
CM5 C17 C 11.600 -3.143 16
CM5 O21 O 12.899 -3.893 17
CM5 O14 O 9.002 -1.643 18
CM5 C15 C 9.002 -3.143 19
CM5 C19 C 7.702 -3.893 20
CM5 O20 O 6.404 -3.143 21
CM5 C16 C 10.301 -3.893 22
CM5 O23 O 10.301 -5.393 23
CM5 C24 C 9.002 -6.143 24
CM5 O25 O 7.702 -5.393 25
CM5 C26 C 6.404 -6.143 26
CM5 C30 C 5.104 -5.393 27
CM5 O31 O 3.805 -6.143 28
CM5 C27 C 6.404 -7.643 29
CM5 O32 O 5.104 -8.393 30
CM5 C28 C 7.702 -8.393 31
CM5 O33 O 7.702 -9.893 32
CM5 C29 C 9.002 -7.643 33
CM5 O34 O 10.301 -8.393 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CM5 C7 C8 SINGLE NONE 1
CM5 C7 C6 SINGLE NONE 2
CM5 C8 C9 SINGLE NONE 3
CM5 C9 C10 SINGLE NONE 4
CM5 C10 C11 SINGLE NONE 5
CM5 C11 C6 SINGLE NONE 6
CM5 C6 C5 SINGLE NONE 7
CM5 C5 C4 SINGLE NONE 8
CM5 C4 C3 SINGLE NONE 9
CM5 C3 C2 SINGLE NONE 10
CM5 C2 C1 SINGLE NONE 11
CM5 C1 O12 SINGLE NONE 12
CM5 C13 O12 SINGLE BEGINWEDGE 13
CM5 C13 C18 SINGLE NONE 14
CM5 C13 O14 SINGLE NONE 15
CM5 C18 O22 SINGLE BEGINDASH 16
CM5 C18 C17 SINGLE NONE 17
CM5 C17 O21 SINGLE BEGINWEDGE 18
CM5 C17 C16 SINGLE NONE 19
CM5 O14 C15 SINGLE NONE 20
CM5 C15 C19 SINGLE BEGINWEDGE 21
CM5 C15 C16 SINGLE NONE 22
CM5 C19 O20 SINGLE NONE 23
CM5 C16 O23 SINGLE BEGINDASH 24
CM5 C24 O23 SINGLE BEGINDASH 25
CM5 C24 O25 SINGLE NONE 26
CM5 C24 C29 SINGLE NONE 27
CM5 O25 C26 SINGLE NONE 28
CM5 C26 C30 SINGLE BEGINWEDGE 29
CM5 C26 C27 SINGLE NONE 30
CM5 C30 O31 SINGLE NONE 31
CM5 C27 O32 SINGLE BEGINDASH 32
CM5 C27 C28 SINGLE NONE 33
CM5 C28 O33 SINGLE BEGINWEDGE 34
CM5 C28 C29 SINGLE NONE 35
CM5 C29 O34 SINGLE BEGINDASH 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CM5 MurckoScaffold S1 scaffold 'C(CCO[C@H]1CC[C@H](O[C@@H]2CCCCO2)CO1)CCC1CCCCC1' InChI=1S/C21H38O4/c1-3-9-18(10-4-1)11-5-2-7-15-22-20-14-13-19(17-24-20)25-21-12-6-8-16-23-21/h18-21H,1-17H2/t19-,20+,21+/m0/s1 VBTIPLZWIHPGKQ-PWRODBHTSA-N
CM5 cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
CM5 pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CM5 C7 S1 1
CM5 C8 S1 1
CM5 C9 S1 1
CM5 C10 S1 1
CM5 C11 S1 1
CM5 C6 S1 1
CM5 C5 S1 1
CM5 C4 S1 1
CM5 C3 S1 1
CM5 C2 S1 1
CM5 C1 S1 1
CM5 O12 S1 1
CM5 C13 S1 1
CM5 C18 S1 1
CM5 C17 S1 1
CM5 O14 S1 1
CM5 C15 S1 1
CM5 C16 S1 1
CM5 O23 S1 1
CM5 C24 S1 1
CM5 O25 S1 1
CM5 C26 S1 1
CM5 C27 S1 1
CM5 C28 S1 1
CM5 C29 S1 1
CM5 C7 F1 1
CM5 C8 F1 1
CM5 C9 F1 1
CM5 C10 F1 1
CM5 C11 F1 1
CM5 C6 F1 1
CM5 C16 F2 1
CM5 C15 F2 1
CM5 O14 F2 1
CM5 C13 F2 1
CM5 C18 F2 1
CM5 C17 F2 1
CM5 O12 F2 1
CM5 C27 F2 2
CM5 C26 F2 2
CM5 O25 F2 2
CM5 C24 F2 2
CM5 C29 F2 2
CM5 C28 F2 2
CM5 O23 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id CM5
_pdbe_chem_comp_rdkit_properties.exactmw 494.273
_pdbe_chem_comp_rdkit_properties.amw 494.578
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 76
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 259.380
_pdbe_chem_comp_rdkit_properties.tpsa 178.530
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.232
_pdbe_chem_comp_rdkit_properties.CrippenMR 117.396
_pdbe_chem_comp_rdkit_properties.chi0v 15.991
_pdbe_chem_comp_rdkit_properties.chi1v 8.312
_pdbe_chem_comp_rdkit_properties.chi2v 3.385
_pdbe_chem_comp_rdkit_properties.chi3v 3.385
_pdbe_chem_comp_rdkit_properties.chi4v 1.958
_pdbe_chem_comp_rdkit_properties.chi0n 57.991
_pdbe_chem_comp_rdkit_properties.chi1n 28.670
_pdbe_chem_comp_rdkit_properties.chi2n 3.385
_pdbe_chem_comp_rdkit_properties.chi3n 3.385
_pdbe_chem_comp_rdkit_properties.chi4n 1.958
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.440
_pdbe_chem_comp_rdkit_properties.kappa1 5.914
_pdbe_chem_comp_rdkit_properties.kappa2 13.753
_pdbe_chem_comp_rdkit_properties.kappa3 7.072
_pdbe_chem_comp_rdkit_properties.Phi 2.392
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CM5 UniChem DrugBank DB04664
CM5 UniChem PDBe CM5
CM5 UniChem ZINC ZINC000014881288
CM5 UniChem eMolecules 31259980
CM5 UniChem 'PubChem TPHARMA' 16774281
CM5 UniChem 'EPA CompTox Dashboard' DTXSID60416123
CM5 UniChem BRENDA 135759
CM5 UniChem BRENDA 209715
CM5 UniChem BRENDA 209814
CM5 UniChem 'Probes And Drugs' PD005918
CM5 UniChem Nikkaji J1.204.150K
CM5 UniChem PubChem 5327073
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CM5 C7 -8.028 1.067 0.762 ETKDGv3 1
CM5 C8 -8.294 0.607 2.210 ETKDGv3 2
CM5 C9 -7.446 -0.608 2.635 ETKDGv3 3
CM5 C10 -7.126 -1.514 1.443 ETKDGv3 4
CM5 C11 -6.317 -0.772 0.360 ETKDGv3 5
CM5 C6 -6.585 0.758 0.320 ETKDGv3 6
CM5 C5 -6.313 1.358 -1.080 ETKDGv3 7
CM5 C4 -4.874 1.159 -1.590 ETKDGv3 8
CM5 C3 -3.829 1.884 -0.724 ETKDGv3 9
CM5 C2 -2.442 1.926 -1.385 ETKDGv3 10
CM5 C1 -1.781 0.548 -1.465 ETKDGv3 11
CM5 O12 -0.461 0.704 -1.944 ETKDGv3 12
CM5 C13 0.230 -0.533 -1.913 ETKDGv3 13
CM5 C18 1.486 -0.445 -2.819 ETKDGv3 14
CM5 O22 1.197 -0.928 -4.106 ETKDGv3 15
CM5 C17 2.623 -1.267 -2.207 ETKDGv3 16
CM5 O21 3.756 -1.276 -3.042 ETKDGv3 17
CM5 O14 0.512 -0.923 -0.568 ETKDGv3 18
CM5 C15 1.686 -0.336 -0.020 ETKDGv3 19
CM5 C19 1.526 1.186 0.198 ETKDGv3 20
CM5 O20 2.540 1.677 1.032 ETKDGv3 21
CM5 C16 2.974 -0.717 -0.812 ETKDGv3 22
CM5 O23 3.679 -1.726 -0.101 ETKDGv3 23
CM5 C24 4.981 -1.302 0.254 ETKDGv3 24
CM5 O25 4.901 -0.265 1.219 ETKDGv3 25
CM5 C26 6.160 0.374 1.420 ETKDGv3 26
CM5 C30 6.308 1.557 0.449 ETKDGv3 27
CM5 O31 7.385 2.366 0.833 ETKDGv3 28
CM5 C27 7.378 -0.602 1.366 ETKDGv3 29
CM5 O32 8.383 -0.175 2.251 ETKDGv3 30
CM5 C28 6.926 -2.015 1.761 ETKDGv3 31
CM5 O33 8.015 -2.897 1.676 ETKDGv3 32
CM5 C29 5.774 -2.495 0.841 ETKDGv3 33
CM5 O34 4.933 -3.381 1.539 ETKDGv3 34
CM5 H71 -8.226 2.159 0.690 ETKDGv3 35
CM5 H72 -8.738 0.552 0.077 ETKDGv3 36
CM5 H81 -8.083 1.447 2.908 ETKDGv3 37
CM5 H82 -9.372 0.358 2.312 ETKDGv3 38
CM5 H91 -7.992 -1.189 3.409 ETKDGv3 39
CM5 H92 -6.492 -0.257 3.088 ETKDGv3 40
CM5 H101 -8.081 -1.883 1.006 ETKDGv3 41
CM5 H102 -6.554 -2.401 1.793 ETKDGv3 42
CM5 H111 -5.233 -0.936 0.546 ETKDGv3 43
CM5 H112 -6.557 -1.234 -0.623 ETKDGv3 44
CM5 H6 -5.911 1.256 1.051 ETKDGv3 45
CM5 H51 -6.535 2.448 -1.063 ETKDGv3 46
CM5 H52 -7.010 0.898 -1.815 ETKDGv3 47
CM5 H41 -4.641 0.076 -1.645 ETKDGv3 48
CM5 H42 -4.825 1.560 -2.626 ETKDGv3 49
CM5 H31A -3.744 1.391 0.268 ETKDGv3 50
CM5 H32A -4.160 2.932 -0.556 ETKDGv3 51
CM5 H21A -2.518 2.365 -2.404 ETKDGv3 52
CM5 H22A -1.790 2.595 -0.780 ETKDGv3 53
CM5 H11 -2.362 -0.093 -2.164 ETKDGv3 54
CM5 H12 -1.786 0.093 -0.449 ETKDGv3 55
CM5 H13 -0.409 -1.340 -2.345 ETKDGv3 56
CM5 H18 1.825 0.616 -2.895 ETKDGv3 57
CM5 H22 0.622 -0.246 -4.542 ETKDGv3 58
CM5 H17 2.273 -2.319 -2.102 ETKDGv3 59
CM5 H21 4.038 -0.334 -3.184 ETKDGv3 60
CM5 H15 1.785 -0.768 1.001 ETKDGv3 61
CM5 H191 0.528 1.401 0.645 ETKDGv3 62
CM5 H192 1.583 1.726 -0.769 ETKDGv3 63
CM5 H20 2.304 1.410 1.958 ETKDGv3 64
CM5 H16 3.574 0.215 -0.965 ETKDGv3 65
CM5 H24 5.516 -0.958 -0.665 ETKDGv3 66
CM5 H26 6.121 0.801 2.447 ETKDGv3 67
CM5 H301 6.463 1.189 -0.589 ETKDGv3 68
CM5 H302 5.372 2.159 0.470 ETKDGv3 69
CM5 H31 7.426 3.102 0.169 ETKDGv3 70
CM5 H27 7.783 -0.656 0.326 ETKDGv3 71
CM5 H32 8.948 0.474 1.757 ETKDGv3 72
CM5 H28 6.571 -1.967 2.819 ETKDGv3 73
CM5 H33 7.751 -3.722 2.161 ETKDGv3 74
CM5 H29 6.208 -3.055 -0.018 ETKDGv3 75
CM5 H34 4.474 -2.861 2.250 ETKDGv3 76
#