data_CPX
#
_chem_comp.id CPX
_chem_comp.name
N-[(2R,3S)-1-((2S)-2-{[(CYCLOPENTYLAMINO)CARBONYL]AMINO}-3-METHYLBUTANOYL)-2-(1-FORMYL-1-CYCLOBUTYL)PYRROLIDINYL]CYCLOPROPANECARBOXAMIDE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H38 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-12-11
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 446.583
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CPX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1RTL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CPX O27 O27 O 0 1 N N N N N N 4.826 30.830 12.265 -3.927 0.862 1.214 O27 CPX 1
CPX C17 C17 C 0 1 N N N N N N 6.625 23.469 16.746 7.721 2.674 0.120 C17 CPX 2
CPX C16 C16 C 0 1 N N N N N N 5.302 22.885 16.304 7.658 1.610 -0.978 C16 CPX 3
CPX C12 C12 C 0 1 N N N N N N 6.537 22.611 15.488 6.390 2.360 -0.566 C12 CPX 4
CPX C26 C26 C 0 1 N N N N N N 5.802 31.463 11.792 -3.877 0.492 0.057 C26 CPX 5
CPX N4 N4 N 0 1 N N N N N N 6.245 32.749 11.929 -4.935 0.680 -0.757 N4 CPX 6
CPX C29 C29 C 0 1 N N N N N N 6.040 34.104 12.464 -6.145 1.329 -0.247 C29 CPX 7
CPX C30 C30 C 0 1 N N N N N N 7.202 34.678 13.424 -6.920 1.983 -1.404 C30 CPX 8
CPX C32 C32 C 0 1 N N N N N N 8.122 35.618 12.615 -8.306 1.306 -1.445 C32 CPX 9
CPX C31 C31 C 0 1 N N N N N N 7.497 35.750 11.219 -8.506 0.765 -0.008 C31 CPX 10
CPX C28 C28 C 0 1 N N N N N N 6.061 35.168 11.302 -7.087 0.277 0.375 C28 CPX 11
CPX N3 N3 N 0 1 N N N N N N 6.675 30.783 10.939 -2.764 -0.105 -0.412 N3 CPX 12
CPX C13 C13 C 0 1 N N S N N N 6.819 29.448 10.432 -1.614 -0.309 0.473 C13 CPX 13
CPX C19 C19 C 0 1 N N N N N N 7.607 29.719 9.135 -1.801 -1.607 1.261 C19 CPX 14
CPX C22 C22 C 0 1 N N N N N N 8.557 28.573 8.783 -0.669 -1.753 2.279 C22 CPX 15
CPX C18 C18 C 0 1 N N N N N N 6.586 30.085 8.069 -3.144 -1.570 1.993 C18 CPX 16
CPX C14 C14 C 0 1 N N N N N N 7.514 28.543 11.482 -0.356 -0.399 -0.352 C14 CPX 17
CPX O15 O15 O 0 1 N N N N N N 8.296 29.129 12.285 -0.396 -0.861 -1.472 O15 CPX 18
CPX N2 N2 N 0 1 N N N N N N 7.252 27.194 11.560 0.815 0.035 0.156 N2 CPX 19
CPX C6 C6 C 0 1 N N R N N N 7.858 26.397 12.596 2.132 -0.107 -0.483 C6 CPX 20
CPX C8 C8 C 0 1 N N S N N N 6.746 25.194 12.691 3.167 0.560 0.447 C8 CPX 21
CPX C9 C9 C 0 1 N N N N N N 5.758 25.787 12.026 2.302 1.531 1.293 C9 CPX 22
CPX C7 C7 C 0 1 N N N N N N 6.409 26.328 10.719 0.989 0.724 1.448 C7 CPX 23
CPX N1 N1 N 0 1 N N N N N N 6.267 24.676 14.057 4.169 1.298 -0.326 N1 CPX 24
CPX C10 C10 C 0 1 N N N N N N 6.834 23.407 14.234 5.359 1.601 0.229 C10 CPX 25
CPX O11 O11 O 0 1 N N N N N N 7.639 22.818 13.442 5.600 1.263 1.368 O11 CPX 26
CPX C25 C25 C 0 1 N N N N N N 9.243 26.084 12.889 2.475 -1.586 -0.668 C25 CPX 27
CPX C24 C24 C 0 1 N N N N N N 9.566 25.284 14.179 2.584 -2.330 0.638 C24 CPX 28
CPX O5 O5 O 0 1 N N N N N N 9.821 24.093 13.690 1.857 -3.267 0.862 O5 CPX 29
CPX C23 C23 C 0 1 N N N N N N 10.438 27.001 12.914 1.595 -2.298 -1.710 C23 CPX 30
CPX C21 C21 C 0 1 N N N N N N 10.907 26.614 11.536 2.868 -3.026 -2.172 C21 CPX 31
CPX C20 C20 C 0 1 N N N N N N 10.052 25.367 11.744 3.659 -1.830 -1.619 C20 CPX 32
CPX H171 1H17 H 0 0 N N N N N N 7.230 23.444 17.682 8.202 3.621 -0.125 H171 CPX 33
CPX H172 2H17 H 0 0 N N N N N N 7.001 24.492 16.984 7.851 2.331 1.146 H172 CPX 34
CPX H161 1H16 H 0 0 N N N N N N 4.295 23.309 16.081 7.747 0.567 -0.673 H161 CPX 35
CPX H162 2H16 H 0 0 N N N N N N 4.527 22.247 16.789 8.098 1.857 -1.944 H162 CPX 36
CPX H12 H12 H 0 1 N N N N N N 6.961 21.662 15.085 5.995 3.101 -1.262 H12 CPX 37
CPX HN4 HN4 H 0 1 N N N N N N 6.370 32.982 10.944 -4.895 0.386 -1.680 HN4 CPX 38
CPX H29 H29 H 0 1 N N N N N N 5.081 33.983 13.020 -5.881 2.081 0.497 H29 CPX 39
CPX H301 1H30 H 0 0 N N N N N N 7.772 33.863 13.929 -7.032 3.052 -1.222 H301 CPX 40
CPX H302 2H30 H 0 0 N N N N N N 6.790 35.173 14.334 -6.396 1.818 -2.345 H302 CPX 41
CPX H321 1H32 H 0 0 N N N N N N 9.185 35.282 12.592 -9.079 2.034 -1.690 H321 CPX 42
CPX H322 2H32 H 0 0 N N N N N N 8.297 36.600 13.114 -8.309 0.488 -2.165 H322 CPX 43
CPX H311 1H31 H 0 0 N N N N N N 8.114 35.279 10.418 -8.836 1.559 0.662 H311 CPX 44
CPX H312 2H31 H 0 0 N N N N N N 7.523 36.793 10.826 -9.214 -0.065 -0.003 H312 CPX 45
CPX H281 1H28 H 0 0 N N N N N N 5.281 35.956 11.422 -6.893 -0.707 -0.051 H281 CPX 46
CPX H282 2H28 H 0 0 N N N N N N 5.705 34.754 10.330 -6.971 0.255 1.459 H282 CPX 47
CPX HN3 HN3 H 0 1 N N N N N N 7.390 31.426 10.599 -2.724 -0.399 -1.335 HN3 CPX 48
CPX H13 H13 H 0 1 N N N N N N 5.883 28.879 10.226 -1.535 0.529 1.165 H13 CPX 49
CPX H19 H19 H 0 1 N N N N N N 8.311 30.577 9.248 -1.784 -2.454 0.575 H19 CPX 50
CPX H221 1H22 H 0 0 N N N N N N 8.013 27.601 8.728 -0.847 -2.632 2.898 H221 CPX 51
CPX H222 2H22 H 0 0 N N N N N N 9.127 28.769 7.845 0.280 -1.865 1.754 H222 CPX 52
CPX H223 3H22 H 0 0 N N N N N N 9.244 28.344 9.631 -0.632 -0.865 2.911 H223 CPX 53
CPX H181 1H18 H 0 0 N N N N N N 5.925 30.932 8.366 -3.161 -0.723 2.679 H181 CPX 54
CPX H182 2H18 H 0 0 N N N N N N 7.156 30.281 7.131 -3.951 -1.466 1.267 H182 CPX 55
CPX H183 3H18 H 0 0 N N N N N N 5.786 29.318 7.945 -3.277 -2.495 2.554 H183 CPX 56
CPX H6 H6 H 0 1 N N N N N N 8.114 27.106 13.418 2.124 0.396 -1.450 H6 CPX 57
CPX H8 H8 H 0 1 N N N N N N 7.175 24.236 12.315 3.645 -0.185 1.083 H8 CPX 58
CPX H91 1H9 H 0 1 N N N N N N 5.222 26.566 12.617 2.126 2.465 0.759 H91 CPX 59
CPX H92 2H9 H 0 1 N N N N N N 4.876 25.128 11.850 2.762 1.719 2.264 H92 CPX 60
CPX H71 1H7 H 0 1 N N N N N N 6.865 25.633 9.976 0.151 1.395 1.635 H71 CPX 61
CPX H72 2H7 H 0 1 N N N N N N 5.783 26.757 9.903 1.083 -0.002 2.255 H72 CPX 62
CPX HN1 HN1 H 0 1 N N N N N N 5.658 25.113 14.749 3.976 1.568 -1.237 HN1 CPX 63
CPX H24 H24 H 0 1 N N N N N N 9.607 25.521 15.256 3.313 -2.024 1.374 H24 CPX 64
CPX H231 1H23 H 0 0 N N N N N N 11.157 26.905 13.761 0.848 -2.959 -1.271 H231 CPX 65
CPX H232 2H23 H 0 0 N N N N N N 10.267 28.082 13.128 1.179 -1.626 -2.461 H232 CPX 66
CPX H211 1H21 H 0 0 N N N N N N 11.988 26.557 11.269 3.055 -3.958 -1.639 H211 CPX 67
CPX H212 2H21 H 0 0 N N N N N N 10.779 27.283 10.654 2.940 -3.135 -3.254 H212 CPX 68
CPX H201 1H20 H 0 0 N N N N N N 9.507 24.922 10.879 3.807 -1.031 -2.345 H201 CPX 69
CPX H202 2H20 H 0 0 N N N N N N 10.545 24.388 11.947 4.579 -2.114 -1.107 H202 CPX 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CPX O27 C26 DOUB N N 1
CPX C17 C16 SING N N 2
CPX C17 C12 SING N N 3
CPX C17 H171 SING N N 4
CPX C17 H172 SING N N 5
CPX C16 C12 SING N N 6
CPX C16 H161 SING N N 7
CPX C16 H162 SING N N 8
CPX C12 C10 SING N N 9
CPX C12 H12 SING N N 10
CPX C26 N4 SING N N 11
CPX C26 N3 SING N N 12
CPX N4 C29 SING N N 13
CPX N4 HN4 SING N N 14
CPX C29 C30 SING N N 15
CPX C29 C28 SING N N 16
CPX C29 H29 SING N N 17
CPX C30 C32 SING N N 18
CPX C30 H301 SING N N 19
CPX C30 H302 SING N N 20
CPX C32 C31 SING N N 21
CPX C32 H321 SING N N 22
CPX C32 H322 SING N N 23
CPX C31 C28 SING N N 24
CPX C31 H311 SING N N 25
CPX C31 H312 SING N N 26
CPX C28 H281 SING N N 27
CPX C28 H282 SING N N 28
CPX N3 C13 SING N N 29
CPX N3 HN3 SING N N 30
CPX C13 C19 SING N N 31
CPX C13 C14 SING N N 32
CPX C13 H13 SING N N 33
CPX C19 C22 SING N N 34
CPX C19 C18 SING N N 35
CPX C19 H19 SING N N 36
CPX C22 H221 SING N N 37
CPX C22 H222 SING N N 38
CPX C22 H223 SING N N 39
CPX C18 H181 SING N N 40
CPX C18 H182 SING N N 41
CPX C18 H183 SING N N 42
CPX C14 O15 DOUB N N 43
CPX C14 N2 SING N N 44
CPX N2 C6 SING N N 45
CPX N2 C7 SING N N 46
CPX C6 C8 SING N N 47
CPX C6 C25 SING N N 48
CPX C6 H6 SING N N 49
CPX C8 C9 SING N N 50
CPX C8 N1 SING N N 51
CPX C8 H8 SING N N 52
CPX C9 C7 SING N N 53
CPX C9 H91 SING N N 54
CPX C9 H92 SING N N 55
CPX C7 H71 SING N N 56
CPX C7 H72 SING N N 57
CPX N1 C10 SING N N 58
CPX N1 HN1 SING N N 59
CPX C10 O11 DOUB N N 60
CPX C25 C24 SING N N 61
CPX C25 C23 SING N N 62
CPX C25 C20 SING N N 63
CPX C24 O5 DOUB N N 64
CPX C24 H24 SING N N 65
CPX C23 C21 SING N N 66
CPX C23 H231 SING N N 67
CPX C23 H232 SING N N 68
CPX C21 C20 SING N N 69
CPX C21 H211 SING N N 70
CPX C21 H212 SING N N 71
CPX C20 H201 SING N N 72
CPX C20 H202 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CPX SMILES ACDLabs 10.04 O=C(N2C(C(NC(=O)C1CC1)CC2)C3(C=O)CCC3)C(NC(=O)NC4CCCC4)C(C)C
CPX SMILES_CANONICAL CACTVS 3.341 CC(C)[C@H](NC(=O)NC1CCCC1)C(=O)N2CC[C@H](NC(=O)C3CC3)[C@H]2C4(CCC4)C=O
CPX SMILES CACTVS 3.341 CC(C)[CH](NC(=O)NC1CCCC1)C(=O)N2CC[CH](NC(=O)C3CC3)[CH]2C4(CCC4)C=O
CPX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(C)[C@@H](C(=O)N1CC[C@@H]([C@H]1C2(CCC2)C=O)NC(=O)C3CC3)NC(=O)NC4CCCC4
CPX SMILES "OpenEye OEToolkits" 1.5.0 CC(C)C(C(=O)N1CCC(C1C2(CCC2)C=O)NC(=O)C3CC3)NC(=O)NC4CCCC4
CPX InChI InChI 1.03 InChI=1S/C24H38N4O4/c1-15(2)19(27-23(32)25-17-6-3-4-7-17)22(31)28-13-10-18(26-21(30)16-8-9-16)20(28)24(14-29)11-5-12-24/h14-20H,3-13H2,1-2H3,(H,26,30)(H2,25,27,32)/t18-,19-,20-/m0/s1
CPX InChIKey InChI 1.03 GCDRFILPPBOJLM-UFYCRDLUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CPX "SYSTEMATIC NAME" ACDLabs 10.04 N-[(2R,3S)-1-[N-(cyclopentylcarbamoyl)-L-valyl]-2-(1-formylcyclobutyl)pyrrolidin-3-yl]cyclopropanecarboxamide
CPX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 N-[(2R,3S)-1-[(2S)-2-(cyclopentylcarbamoylamino)-3-methyl-butanoyl]-2-(1-methanoylcyclobutyl)pyrrolidin-3-yl]cyclopropanecarboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CPX 'Create component' 2003-12-11 RCSB
CPX 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id CPX
_pdbe_chem_comp_drugbank_details.drugbank_id DB07582
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'N-[(2R,3S)-1-((2S)-2-{[(CYCLOPENTYLAMINO)CARBONYL]AMINO}-3-METHYLBUTANOYL)-2-(1-FORMYL-1-CYCLOBUTYL)PYRROLIDINYL]CYCLOPROPANECARBOXAMIDE'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CPX
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07582
_pdbe_chem_comp_drugbank_classification.parent 'N-carbamoyl-alpha amino acids and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as n-carbamoyl-alpha amino acids and derivatives. These are compounds containing an alpha amino acid (or a derivative thereof) which bears an carbamoyl group at its terminal nitrogen atom.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
CPX DB07582 'Genome polyprotein' HCV P26664 unknown 1
CPX DB07582 'NS3 protease' 'Hepatitis C Virus' Q91RS4 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CPX O27 O 11.427 -3.272 1
CPX C17 C 5.470 8.075 2
CPX C16 C 4.257 7.194 3
CPX C12 C 5.627 6.584 4
CPX C26 C 10.128 -4.022 5
CPX N4 N 10.128 -5.522 6
CPX C29 C 11.427 -6.272 7
CPX C30 C 11.584 -7.764 8
CPX C32 C 13.051 -8.075 9
CPX C31 C 13.801 -6.777 10
CPX C28 C 12.798 -5.662 11
CPX N3 N 8.829 -3.272 12
CPX C13 C 8.829 -1.772 13
CPX C19 C 10.128 -1.022 14
CPX C22 C 11.427 -1.772 15
CPX C18 C 10.128 0.478 16
CPX C14 C 7.530 -1.022 17
CPX O15 O 6.231 -1.772 18
CPX N2 N 7.530 0.478 19
CPX C6 C 6.317 1.360 20
CPX C8 C 6.780 2.786 21
CPX C9 C 8.280 2.786 22
CPX C7 C 8.744 1.360 23
CPX N1 N 5.899 4.000 24
CPX C10 C 6.509 5.370 25
CPX O11 O 8.000 5.527 26
CPX C25 C 4.890 0.896 27
CPX C24 C 5.354 -0.530 28
CPX O5 O 4.350 -1.645 29
CPX C23 C 3.463 0.433 30
CPX C21 C 3.000 1.859 31
CPX C20 C 4.427 2.323 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CPX O27 C26 DOUBLE NONE 1
CPX C17 C16 SINGLE NONE 2
CPX C17 C12 SINGLE NONE 3
CPX C16 C12 SINGLE NONE 4
CPX C12 C10 SINGLE NONE 5
CPX C26 N4 SINGLE NONE 6
CPX C26 N3 SINGLE NONE 7
CPX N4 C29 SINGLE NONE 8
CPX C29 C30 SINGLE NONE 9
CPX C29 C28 SINGLE NONE 10
CPX C30 C32 SINGLE NONE 11
CPX C32 C31 SINGLE NONE 12
CPX C31 C28 SINGLE NONE 13
CPX C13 N3 SINGLE BEGINDASH 14
CPX C13 C19 SINGLE NONE 15
CPX C13 C14 SINGLE NONE 16
CPX C19 C22 SINGLE NONE 17
CPX C19 C18 SINGLE NONE 18
CPX C14 O15 DOUBLE NONE 19
CPX C14 N2 SINGLE NONE 20
CPX N2 C6 SINGLE NONE 21
CPX N2 C7 SINGLE NONE 22
CPX C6 C8 SINGLE NONE 23
CPX C6 C25 SINGLE BEGINDASH 24
CPX C8 C9 SINGLE NONE 25
CPX C8 N1 SINGLE BEGINWEDGE 26
CPX C9 C7 SINGLE NONE 27
CPX N1 C10 SINGLE NONE 28
CPX C10 O11 DOUBLE NONE 29
CPX C25 C24 SINGLE NONE 30
CPX C25 C23 SINGLE NONE 31
CPX C25 C20 SINGLE NONE 32
CPX C24 O5 DOUBLE NONE 33
CPX C23 C21 SINGLE NONE 34
CPX C21 C20 SINGLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CPX MurckoScaffold S1 scaffold 'O=C(NCC(=O)N1CC[C@H](NC(=O)C2CC2)[C@H]1C1CCC1)NC1CCCC1' InChI=1S/C20H32N4O3/c25-17(12-21-20(27)22-15-6-1-2-7-15)24-11-10-16(18(24)13-4-3-5-13)23-19(26)14-8-9-14/h13-16,18H,1-12H2,(H,23,26)(H2,21,22,27)/t16-,18+/m0/s1 ICVXUNYAQGZCDB-FUHWJXTLSA-N
CPX amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
CPX cyclobutane F2 fragment C1CCC1 InChI=1S/C4H8/c1-2-4-3-1/h1-4H2 PMPVIKIVABFJJI-UHFFFAOYSA-N
CPX cyclopentane F3 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
CPX cyclopropane F4 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
CPX peptide F5 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
CPX Z1650040241 F6 fragment CCC(=O)NC1CCNC1 InChI=1S/C7H14N2O/c1-2-7(10)9-6-3-4-8-5-6/h6,8H,2-5H2,1H3,(H,9,10) JTOGNXBWLDRNON-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CPX O27 S1 1
CPX C17 S1 1
CPX C16 S1 1
CPX C12 S1 1
CPX C26 S1 1
CPX N4 S1 1
CPX C29 S1 1
CPX C30 S1 1
CPX C32 S1 1
CPX C31 S1 1
CPX C28 S1 1
CPX N3 S1 1
CPX C13 S1 1
CPX C14 S1 1
CPX O15 S1 1
CPX N2 S1 1
CPX C6 S1 1
CPX C8 S1 1
CPX C9 S1 1
CPX C7 S1 1
CPX N1 S1 1
CPX C10 S1 1
CPX O11 S1 1
CPX C25 S1 1
CPX C23 S1 1
CPX C21 S1 1
CPX C20 S1 1
CPX N2 F1 1
CPX C14 F1 1
CPX O15 F1 1
CPX C13 F1 1
CPX N1 F1 2
CPX C10 F1 2
CPX O11 F1 2
CPX C12 F1 2
CPX C25 F2 1
CPX C23 F2 1
CPX C21 F2 1
CPX C20 F2 1
CPX C29 F3 1
CPX C30 F3 1
CPX C32 F3 1
CPX C31 F3 1
CPX C28 F3 1
CPX C17 F4 1
CPX C16 F4 1
CPX C12 F4 1
CPX O15 F5 1
CPX C14 F5 1
CPX C13 F5 1
CPX N3 F5 1
CPX C17 F6 1
CPX C12 F6 1
CPX C10 F6 1
CPX O11 F6 1
CPX N1 F6 1
CPX C8 F6 1
CPX C9 F6 1
CPX C7 F6 1
CPX N2 F6 1
CPX C6 F6 1
CPX C16 F6 2
CPX C12 F6 2
CPX C10 F6 2
CPX O11 F6 2
CPX N1 F6 2
CPX C8 F6 2
CPX C9 F6 2
CPX C7 F6 2
CPX N2 F6 2
CPX C6 F6 2
#
_pdbe_chem_comp_rdkit_properties.comp_id CPX
_pdbe_chem_comp_rdkit_properties.exactmw 446.289
_pdbe_chem_comp_rdkit_properties.amw 446.592
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 70
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.833
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 4
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 243.728
_pdbe_chem_comp_rdkit_properties.tpsa 107.610
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.118
_pdbe_chem_comp_rdkit_properties.CrippenMR 119.670
_pdbe_chem_comp_rdkit_properties.chi0v 15.422
_pdbe_chem_comp_rdkit_properties.chi1v 8.329
_pdbe_chem_comp_rdkit_properties.chi2v 3.901
_pdbe_chem_comp_rdkit_properties.chi3v 3.901
_pdbe_chem_comp_rdkit_properties.chi4v 2.410
_pdbe_chem_comp_rdkit_properties.chi0n 53.422
_pdbe_chem_comp_rdkit_properties.chi1n 27.171
_pdbe_chem_comp_rdkit_properties.chi2n 3.901
_pdbe_chem_comp_rdkit_properties.chi3n 3.901
_pdbe_chem_comp_rdkit_properties.chi4n 2.410
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.120
_pdbe_chem_comp_rdkit_properties.kappa1 4.961
_pdbe_chem_comp_rdkit_properties.kappa2 9.396
_pdbe_chem_comp_rdkit_properties.kappa3 4.641
_pdbe_chem_comp_rdkit_properties.Phi 1.456
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CPX UniChem DrugBank DB07582
CPX UniChem PDBe CPX
CPX UniChem ZINC ZINC000033821260
CPX UniChem PubChem 5287977
CPX UniChem 'Probes And Drugs' PD005053
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CPX O27 -3.724 -0.833 0.664 ETKDGv3 1
CPX C17 4.938 2.728 -2.773 ETKDGv3 2
CPX C16 3.982 3.897 -2.572 ETKDGv3 3
CPX C12 4.983 3.536 -1.485 ETKDGv3 4
CPX C26 -3.246 -0.581 -0.476 ETKDGv3 5
CPX N4 -4.047 0.086 -1.460 ETKDGv3 6
CPX C29 -5.420 0.518 -1.182 ETKDGv3 7
CPX C30 -5.456 1.685 -0.201 ETKDGv3 8
CPX C32 -6.691 2.506 -0.566 ETKDGv3 9
CPX C31 -7.190 1.987 -1.913 ETKDGv3 10
CPX C28 -6.119 1.041 -2.430 ETKDGv3 11
CPX N3 -1.899 -0.960 -0.792 ETKDGv3 12
CPX C13 -1.037 -1.673 0.155 ETKDGv3 13
CPX C19 -1.387 -3.190 0.195 ETKDGv3 14
CPX C22 -1.385 -3.871 -1.185 ETKDGv3 15
CPX C18 -0.491 -3.957 1.178 ETKDGv3 16
CPX C14 0.415 -1.367 -0.147 ETKDGv3 17
CPX O15 1.013 -1.989 -1.066 ETKDGv3 18
CPX N2 1.091 -0.298 0.539 ETKDGv3 19
CPX C6 2.544 -0.218 0.676 ETKDGv3 20
CPX C8 2.842 1.275 0.942 ETKDGv3 21
CPX C9 1.503 1.915 1.322 ETKDGv3 22
CPX C7 0.420 0.956 0.849 ETKDGv3 23
CPX N1 3.366 1.911 -0.272 ETKDGv3 24
CPX C10 4.426 2.886 -0.239 ETKDGv3 25
CPX O11 4.926 3.226 0.867 ETKDGv3 26
CPX C25 3.061 -1.148 1.822 ETKDGv3 27
CPX C24 2.341 -0.953 3.147 ETKDGv3 28
CPX O5 2.675 -1.581 4.141 ETKDGv3 29
CPX C23 4.593 -1.120 1.968 ETKDGv3 30
CPX C21 4.662 -2.596 1.606 ETKDGv3 31
CPX C20 3.151 -2.632 1.424 ETKDGv3 32
CPX H171 5.768 2.946 -3.479 ETKDGv3 33
CPX H172 4.465 1.726 -2.727 ETKDGv3 34
CPX H161 4.252 4.800 -3.160 ETKDGv3 35
CPX H162 2.925 3.610 -2.399 ETKDGv3 36
CPX H12 5.847 4.230 -1.394 ETKDGv3 37
CPX HN4 -3.641 0.225 -2.413 ETKDGv3 38
CPX H29 -6.008 -0.336 -0.774 ETKDGv3 39
CPX H301 -4.546 2.314 -0.319 ETKDGv3 40
CPX H302 -5.512 1.322 0.848 ETKDGv3 41
CPX H321 -7.480 2.382 0.208 ETKDGv3 42
CPX H322 -6.428 3.584 -0.638 ETKDGv3 43
CPX H311 -8.142 1.428 -1.771 ETKDGv3 44
CPX H312 -7.365 2.820 -2.628 ETKDGv3 45
CPX H281 -5.408 1.614 -3.067 ETKDGv3 46
CPX H282 -6.560 0.212 -3.025 ETKDGv3 47
CPX HN3 -1.536 -0.745 -1.749 ETKDGv3 48
CPX H13 -1.239 -1.282 1.176 ETKDGv3 49
CPX H19 -2.427 -3.270 0.585 ETKDGv3 50
CPX H221 -1.795 -4.899 -1.093 ETKDGv3 51
CPX H222 -0.362 -3.951 -1.602 ETKDGv3 52
CPX H223 -2.028 -3.317 -1.900 ETKDGv3 53
CPX H181 0.551 -4.016 0.799 ETKDGv3 54
CPX H182 -0.874 -4.991 1.314 ETKDGv3 55
CPX H183 -0.486 -3.456 2.169 ETKDGv3 56
CPX H6 3.024 -0.525 -0.282 ETKDGv3 57
CPX H8 3.560 1.399 1.782 ETKDGv3 58
CPX H91 1.374 2.921 0.866 ETKDGv3 59
CPX H92 1.445 2.028 2.427 ETKDGv3 60
CPX H71 -0.339 0.808 1.647 ETKDGv3 61
CPX H72 -0.070 1.354 -0.066 ETKDGv3 62
CPX HN1 2.851 1.730 -1.162 ETKDGv3 63
CPX H24 1.515 -0.259 3.230 ETKDGv3 64
CPX H231 4.954 -0.922 3.002 ETKDGv3 65
CPX H232 5.109 -0.492 1.208 ETKDGv3 66
CPX H211 5.003 -3.227 2.456 ETKDGv3 67
CPX H212 5.213 -2.779 0.658 ETKDGv3 68
CPX H201 2.888 -2.844 0.367 ETKDGv3 69
CPX H202 2.660 -3.331 2.136 ETKDGv3 70
#