data_CS5
#
_chem_comp.id CS5
_chem_comp.name
"N'-{(1S,2R)-1-(3,5-DIFLUOROBENZYL)-2-HYDROXY-3-[(3-METHOXYBENZYL)AMINO]PROPYL}-5-METHYL-N,N-DIPROPYLISOPHTHALAMIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H41 F2 N3 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-07-23
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 581.693
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CS5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2QK5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CS5 C1 C1 C 0 1 Y N N N N N 26.915 15.462 24.497 -4.320 1.854 -1.285 C1 CS5 1
CS5 C2 C2 C 0 1 Y N N N N N 25.611 15.860 24.920 -3.090 2.100 -1.861 C2 CS5 2
CS5 C3 C3 C 0 1 Y N N N N N 24.484 15.035 24.632 -1.980 1.381 -1.466 C3 CS5 3
CS5 C4 C4 C 0 1 Y N N N N N 24.671 13.802 23.925 -2.095 0.398 -0.480 C4 CS5 4
CS5 C5 C5 C 0 1 Y N N N N N 25.979 13.407 23.503 -3.333 0.144 0.105 C5 CS5 5
CS5 C6 C6 C 0 1 Y N N N N N 27.111 14.237 23.787 -4.450 0.874 -0.298 C6 CS5 6
CS5 C7 C7 C 0 1 N N N N N N 28.474 13.830 23.363 -5.768 0.613 0.318 C7 CS5 7
CS5 N1 N1 N 0 1 N N N N N N 28.708 13.675 22.017 -6.542 1.641 0.717 N1 CS5 8
CS5 O1 O1 O 0 1 N N N N N N 29.372 13.625 24.182 -6.154 -0.531 0.465 O1 CS5 9
CS5 C8 C8 C 0 1 N N N N N N 27.718 13.902 20.973 -7.788 1.383 1.443 C8 CS5 10
CS5 C9 C9 C 0 1 N N N N N N 28.301 14.859 19.951 -7.504 1.347 2.946 C9 CS5 11
CS5 C10 C10 C 0 1 N N N N N N 28.732 16.172 20.607 -8.806 1.077 3.704 C10 CS5 12
CS5 C11 C11 C 0 1 N N N N N N 30.050 13.270 21.619 -6.137 3.019 0.424 C11 CS5 13
CS5 C12 C12 C 0 1 N N N N N N 30.113 11.790 21.234 -6.873 3.513 -0.823 C12 CS5 14
CS5 C13 C13 C 0 1 N N N N N N 29.140 10.914 22.011 -6.352 4.899 -1.207 C13 CS5 15
CS5 C14 C14 C 0 1 N N N N N N 23.522 12.947 23.618 -0.905 -0.373 -0.060 C14 CS5 16
CS5 N2 N2 N 0 1 N N N N N N 23.810 11.630 23.460 0.292 -0.127 -0.627 N2 CS5 17
CS5 O2 O2 O 0 1 N N N N N N 22.379 13.376 23.509 -1.007 -1.228 0.798 O2 CS5 18
CS5 C15 C15 C 0 1 N N S N N N 22.670 10.754 23.140 1.471 -0.890 -0.210 C15 CS5 19
CS5 C16 C16 C 0 1 N N R N N N 22.184 9.944 24.366 2.733 -0.071 -0.486 C16 CS5 20
CS5 C17 C17 C 0 1 N N N N N N 23.025 9.832 21.970 1.533 -2.202 -0.995 C17 CS5 21
CS5 O3 O3 O 0 1 N N N N N N 21.207 9.001 23.910 2.882 0.115 -1.895 O3 CS5 22
CS5 C18 C18 C 0 1 N N N N N N 21.544 10.871 25.429 3.954 -0.813 0.062 C18 CS5 23
CS5 N3 N3 N 0 1 N N N N N N 20.842 10.049 26.442 5.149 0.026 -0.095 N3 CS5 24
CS5 C19 C19 C 0 1 N N N N N N 19.888 10.839 27.255 6.343 -0.656 0.421 C19 CS5 25
CS5 C20 C20 C 0 1 Y N N N N N 18.754 11.431 26.435 7.546 0.233 0.243 C20 CS5 26
CS5 C21 C21 C 0 1 Y N N N N N 23.697 10.632 20.884 0.351 -3.063 -0.629 C21 CS5 27
CS5 C22 C22 C 0 1 Y N N N N N 25.043 10.352 20.526 0.444 -3.951 0.425 C22 CS5 28
CS5 C23 C23 C 0 1 Y N N N N N 25.675 11.111 19.498 -0.642 -4.742 0.762 C23 CS5 29
CS5 C24 C24 C 0 1 Y N N N N N 24.964 12.145 18.831 -1.820 -4.643 0.042 C24 CS5 30
CS5 C25 C25 C 0 1 Y N N N N N 23.618 12.424 19.191 -1.912 -3.752 -1.013 C25 CS5 31
CS5 C26 C26 C 0 1 Y N N N N N 22.983 11.668 20.217 -0.827 -2.958 -1.345 C26 CS5 32
CS5 C27 C27 C 0 1 Y N N N N N 18.490 12.834 26.494 8.289 0.166 -0.922 C27 CS5 33
CS5 C28 C28 C 0 1 Y N N N N N 17.427 13.395 25.725 9.393 0.980 -1.088 C28 CS5 34
CS5 C29 C29 C 0 1 Y N N N N N 16.624 12.555 24.897 9.758 1.864 -0.090 C29 CS5 35
CS5 C30 C30 C 0 1 Y N N N N N 16.883 11.153 24.836 9.015 1.933 1.079 C30 CS5 36
CS5 C31 C31 C 0 1 Y N N N N N 17.951 10.592 25.608 7.904 1.119 1.241 C31 CS5 37
CS5 O4 O4 O 0 1 N N N N N N 16.090 10.356 24.023 9.372 2.801 2.062 O4 CS5 38
CS5 C32 C32 C 0 1 N N N N N N 16.283 8.968 24.275 10.524 3.613 1.823 C32 CS5 39
CS5 C33 C33 C 0 1 N N N N N N 25.432 17.128 25.649 -2.958 3.159 -2.925 C33 CS5 40
CS5 F2 F2 F 0 1 N N N N N N 26.941 10.851 19.159 -0.550 -5.612 1.792 F2 CS5 41
CS5 F1 F1 F 0 1 N N N N N N 22.957 13.398 18.560 -3.061 -3.654 -1.717 F1 CS5 42
CS5 H1 H1 H 0 1 N N N N N N 27.763 16.094 24.716 -5.184 2.424 -1.595 H1 CS5 43
CS5 H3 H3 H 0 1 N N N N N N 23.495 15.337 24.945 -1.020 1.578 -1.921 H3 CS5 44
CS5 H5 H5 H 0 1 N N N N N N 26.114 12.479 22.968 -3.428 -0.615 0.867 H5 CS5 45
CS5 H81 1H8 H 0 1 N N N N N N 27.465 12.948 20.487 -8.505 2.174 1.227 H81 CS5 46
CS5 H82 2H8 H 0 1 N N N N N N 26.804 14.331 21.410 -8.199 0.424 1.128 H82 CS5 47
CS5 H91 1H9 H 0 1 N N N N N N 29.179 14.389 19.483 -6.787 0.556 3.162 H91 CS5 48
CS5 H92 2H9 H 0 1 N N N N N N 27.529 15.081 19.199 -7.093 2.306 3.261 H92 CS5 49
CS5 H101 1H10 H 0 0 N N N N N N 28.835 16.024 21.692 -9.523 1.869 3.488 H101 CS5 50
CS5 H102 2H10 H 0 0 N N N N N N 29.697 16.492 20.187 -9.217 0.118 3.389 H102 CS5 51
CS5 H103 3H10 H 0 0 N N N N N N 27.973 16.945 20.413 -8.604 1.052 4.775 H103 CS5 52
CS5 H111 1H11 H 0 0 N N N N N N 30.356 13.872 20.751 -6.387 3.658 1.271 H111 CS5 53
CS5 H112 2H11 H 0 0 N N N N N N 30.722 13.428 22.476 -5.062 3.052 0.249 H112 CS5 54
CS5 H121 1H12 H 0 0 N N N N N N 29.870 11.705 20.165 -6.701 2.819 -1.645 H121 CS5 55
CS5 H122 2H12 H 0 0 N N N N N N 31.127 11.436 21.471 -7.942 3.571 -0.615 H122 CS5 56
CS5 H131 1H13 H 0 0 N N N N N N 29.552 10.703 23.009 -6.525 5.593 -0.384 H131 CS5 57
CS5 H132 2H13 H 0 0 N N N N N N 28.178 11.438 22.115 -5.284 4.841 -1.415 H132 CS5 58
CS5 H133 3H13 H 0 0 N N N N N N 28.986 9.968 21.470 -6.877 5.251 -2.095 H133 CS5 59
CS5 HN2 HN2 H 0 1 N N N N N N 24.740 11.276 23.555 0.374 0.555 -1.311 HN2 CS5 60
CS5 H15 H15 H 0 1 N N N N N N 21.830 11.398 22.842 1.405 -1.108 0.856 H15 CS5 61
CS5 H16 H16 H 0 1 N N N N N N 23.041 9.435 24.831 2.650 0.900 0.001 H16 CS5 62
CS5 H171 1H17 H 0 0 N N N N N N 23.707 9.043 22.319 1.510 -1.988 -2.063 H171 CS5 63
CS5 H172 2H17 H 0 0 N N N N N N 22.107 9.375 21.573 2.455 -2.729 -0.750 H172 CS5 64
CS5 HO3 HO3 H 0 1 N N N N N N 20.612 8.792 24.621 2.962 -0.710 -2.394 HO3 CS5 65
CS5 H181 1H18 H 0 0 N N N N N N 22.330 11.465 25.919 3.801 -1.033 1.119 H181 CS5 66
CS5 H182 2H18 H 0 0 N N N N N N 20.825 11.546 24.942 4.089 -1.745 -0.487 H182 CS5 67
CS5 HN3 HN3 H 0 1 N N N N N N 20.334 9.329 25.969 5.276 0.297 -1.059 HN3 CS5 68
CS5 H191 1H19 H 0 0 N N N N N N 19.453 10.176 28.017 6.207 -0.875 1.480 H191 CS5 69
CS5 H192 2H19 H 0 0 N N N N N N 20.447 11.676 27.698 6.495 -1.587 -0.125 H192 CS5 70
CS5 H22 H22 H 0 1 N N N N N N 25.586 9.567 21.031 1.363 -4.029 0.986 H22 CS5 71
CS5 H24 H24 H 0 1 N N N N N N 25.446 12.718 18.052 -2.667 -5.260 0.304 H24 CS5 72
CS5 H26 H26 H 0 1 N N N N N N 21.960 11.880 20.489 -0.899 -2.260 -2.166 H26 CS5 73
CS5 H27 H27 H 0 1 N N N N N N 19.096 13.471 27.122 8.005 -0.525 -1.702 H27 CS5 74
CS5 H28 H28 H 0 1 N N N N N N 17.230 14.456 25.770 9.971 0.926 -1.999 H28 CS5 75
CS5 H29 H29 H 0 1 N N N N N N 15.819 12.981 24.316 10.622 2.500 -0.221 H29 CS5 76
CS5 H31 H31 H 0 1 N N N N N N 18.148 9.531 25.564 7.321 1.174 2.148 H31 CS5 77
CS5 H321 1H32 H 0 0 N N N N N N 16.333 8.425 23.320 11.393 2.973 1.668 H321 CS5 78
CS5 H322 2H32 H 0 0 N N N N N N 17.223 8.823 24.828 10.360 4.225 0.937 H322 CS5 79
CS5 H323 3H32 H 0 0 N N N N N N 15.443 8.584 24.872 10.698 4.259 2.684 H323 CS5 80
CS5 H331 1H33 H 0 0 N N N N N N 25.387 16.927 26.730 -2.728 4.117 -2.459 H331 CS5 81
CS5 H332 2H33 H 0 0 N N N N N N 26.279 17.796 25.435 -2.155 2.887 -3.611 H332 CS5 82
CS5 H333 3H33 H 0 0 N N N N N N 24.496 17.607 25.326 -3.895 3.239 -3.476 H333 CS5 83
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CS5 C1 C6 SING Y N 1
CS5 C1 C2 DOUB Y N 2
CS5 C1 H1 SING N N 3
CS5 C2 C3 SING Y N 4
CS5 C2 C33 SING N N 5
CS5 C3 C4 DOUB Y N 6
CS5 C3 H3 SING N N 7
CS5 C4 C5 SING Y N 8
CS5 C4 C14 SING N N 9
CS5 C5 C6 DOUB Y N 10
CS5 C5 H5 SING N N 11
CS5 C6 C7 SING N N 12
CS5 C7 N1 SING N N 13
CS5 C7 O1 DOUB N N 14
CS5 N1 C8 SING N N 15
CS5 N1 C11 SING N N 16
CS5 C8 C9 SING N N 17
CS5 C8 H81 SING N N 18
CS5 C8 H82 SING N N 19
CS5 C9 C10 SING N N 20
CS5 C9 H91 SING N N 21
CS5 C9 H92 SING N N 22
CS5 C10 H101 SING N N 23
CS5 C10 H102 SING N N 24
CS5 C10 H103 SING N N 25
CS5 C11 C12 SING N N 26
CS5 C11 H111 SING N N 27
CS5 C11 H112 SING N N 28
CS5 C12 C13 SING N N 29
CS5 C12 H121 SING N N 30
CS5 C12 H122 SING N N 31
CS5 C13 H131 SING N N 32
CS5 C13 H132 SING N N 33
CS5 C13 H133 SING N N 34
CS5 C14 N2 SING N N 35
CS5 C14 O2 DOUB N N 36
CS5 N2 C15 SING N N 37
CS5 N2 HN2 SING N N 38
CS5 C15 C17 SING N N 39
CS5 C15 C16 SING N N 40
CS5 C15 H15 SING N N 41
CS5 C16 O3 SING N N 42
CS5 C16 C18 SING N N 43
CS5 C16 H16 SING N N 44
CS5 C17 C21 SING N N 45
CS5 C17 H171 SING N N 46
CS5 C17 H172 SING N N 47
CS5 O3 HO3 SING N N 48
CS5 C18 N3 SING N N 49
CS5 C18 H181 SING N N 50
CS5 C18 H182 SING N N 51
CS5 N3 C19 SING N N 52
CS5 N3 HN3 SING N N 53
CS5 C19 C20 SING N N 54
CS5 C19 H191 SING N N 55
CS5 C19 H192 SING N N 56
CS5 C20 C31 DOUB Y N 57
CS5 C20 C27 SING Y N 58
CS5 C21 C26 DOUB Y N 59
CS5 C21 C22 SING Y N 60
CS5 C22 C23 DOUB Y N 61
CS5 C22 H22 SING N N 62
CS5 C23 C24 SING Y N 63
CS5 C23 F2 SING N N 64
CS5 C24 C25 DOUB Y N 65
CS5 C24 H24 SING N N 66
CS5 C25 F1 SING N N 67
CS5 C25 C26 SING Y N 68
CS5 C26 H26 SING N N 69
CS5 C27 C28 DOUB Y N 70
CS5 C27 H27 SING N N 71
CS5 C28 C29 SING Y N 72
CS5 C28 H28 SING N N 73
CS5 C29 C30 DOUB Y N 74
CS5 C29 H29 SING N N 75
CS5 C30 O4 SING N N 76
CS5 C30 C31 SING Y N 77
CS5 C31 H31 SING N N 78
CS5 O4 C32 SING N N 79
CS5 C32 H321 SING N N 80
CS5 C32 H322 SING N N 81
CS5 C32 H323 SING N N 82
CS5 C33 H331 SING N N 83
CS5 C33 H332 SING N N 84
CS5 C33 H333 SING N N 85
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CS5 SMILES ACDLabs 10.04 O=C(N(CCC)CCC)c1cc(cc(c1)C(=O)NC(Cc2cc(F)cc(F)c2)C(O)CNCc3cc(OC)ccc3)C
CS5 SMILES_CANONICAL CACTVS 3.341 CCCN(CCC)C(=O)c1cc(C)cc(c1)C(=O)N[C@@H](Cc2cc(F)cc(F)c2)[C@H](O)CNCc3cccc(OC)c3
CS5 SMILES CACTVS 3.341 CCCN(CCC)C(=O)c1cc(C)cc(c1)C(=O)N[CH](Cc2cc(F)cc(F)c2)[CH](O)CNCc3cccc(OC)c3
CS5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCN(CCC)C(=O)c1cc(cc(c1)C(=O)N[C@@H](Cc2cc(cc(c2)F)F)[C@@H](CNCc3cccc(c3)OC)O)C
CS5 SMILES "OpenEye OEToolkits" 1.5.0 CCCN(CCC)C(=O)c1cc(cc(c1)C(=O)NC(Cc2cc(cc(c2)F)F)C(CNCc3cccc(c3)OC)O)C
CS5 InChI InChI 1.03 InChI=1S/C33H41F2N3O4/c1-5-10-38(11-6-2)33(41)26-13-22(3)12-25(18-26)32(40)37-30(17-24-14-27(34)19-28(35)15-24)31(39)21-36-20-23-8-7-9-29(16-23)42-4/h7-9,12-16,18-19,30-31,36,39H,5-6,10-11,17,20-21H2,1-4H3,(H,37,40)/t30-,31+/m0/s1
CS5 InChIKey InChI 1.03 JEEOUWBWJFSMIP-IOWSJCHKSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CS5 "SYSTEMATIC NAME" ACDLabs 10.04 "N'-{(1S,2R)-1-(3,5-difluorobenzyl)-2-hydroxy-3-[(3-methoxybenzyl)amino]propyl}-5-methyl-N,N-dipropylbenzene-1,3-dicarboxamide"
CS5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N'-[(2S,3R)-1-(3,5-difluorophenyl)-3-hydroxy-4-[(3-methoxyphenyl)methylamino]butan-2-yl]-5-methyl-N,N-dipropyl-benzene-1,3-dicarboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CS5 'Create component' 2007-07-23 RCSB
CS5 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CS5 C1 C 8.196 -3.750 1
CS5 C2 C 9.495 -3.000 2
CS5 C3 C 9.495 -1.500 3
CS5 C4 C 8.196 -0.750 4
CS5 C5 C 6.897 -1.500 5
CS5 C6 C 6.897 -3.000 6
CS5 C7 C 5.598 -3.750 7
CS5 N1 N 5.598 -5.250 8
CS5 O1 O 4.299 -3.000 9
CS5 C8 C 4.299 -6.000 10
CS5 C9 C 4.299 -7.500 11
CS5 C10 C 3.000 -8.250 12
CS5 C11 C 6.897 -6.000 13
CS5 C12 C 6.897 -7.500 14
CS5 C13 C 8.196 -8.250 15
CS5 C14 C 8.196 0.750 16
CS5 N2 N 9.495 1.500 17
CS5 O2 O 6.897 1.500 18
CS5 C15 C 9.495 3.000 19
CS5 C16 C 10.794 3.750 20
CS5 C17 C 8.196 3.750 21
CS5 O3 O 10.794 5.250 22
CS5 C18 C 12.093 3.000 23
CS5 N3 N 13.392 3.750 24
CS5 C19 C 14.691 3.000 25
CS5 C20 C 15.990 3.750 26
CS5 C21 C 8.196 5.250 27
CS5 C22 C 6.897 6.000 28
CS5 C23 C 6.897 7.500 29
CS5 C24 C 8.196 8.250 30
CS5 C25 C 9.495 7.500 31
CS5 C26 C 9.495 6.000 32
CS5 C27 C 17.290 3.000 33
CS5 C28 C 18.588 3.750 34
CS5 C29 C 18.588 5.250 35
CS5 C30 C 17.290 6.000 36
CS5 C31 C 15.990 5.250 37
CS5 O4 O 17.290 7.500 38
CS5 C32 C 18.588 8.250 39
CS5 C33 C 10.794 -3.750 40
CS5 F2 F 5.598 8.250 41
CS5 F1 F 10.794 8.250 42
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CS5 C1 C6 DOUBLE NONE 1
CS5 C1 C2 SINGLE NONE 2
CS5 C2 C3 DOUBLE NONE 3
CS5 C2 C33 SINGLE NONE 4
CS5 C3 C4 SINGLE NONE 5
CS5 C4 C5 DOUBLE NONE 6
CS5 C4 C14 SINGLE NONE 7
CS5 C5 C6 SINGLE NONE 8
CS5 C6 C7 SINGLE NONE 9
CS5 C7 N1 SINGLE NONE 10
CS5 C7 O1 DOUBLE NONE 11
CS5 N1 C8 SINGLE NONE 12
CS5 N1 C11 SINGLE NONE 13
CS5 C8 C9 SINGLE NONE 14
CS5 C9 C10 SINGLE NONE 15
CS5 C11 C12 SINGLE NONE 16
CS5 C12 C13 SINGLE NONE 17
CS5 C14 N2 SINGLE NONE 18
CS5 C14 O2 DOUBLE NONE 19
CS5 N2 C15 SINGLE NONE 20
CS5 C15 C17 SINGLE BEGINWEDGE 21
CS5 C15 C16 SINGLE NONE 22
CS5 C16 O3 SINGLE BEGINDASH 23
CS5 C16 C18 SINGLE NONE 24
CS5 C17 C21 SINGLE NONE 25
CS5 C18 N3 SINGLE NONE 26
CS5 N3 C19 SINGLE NONE 27
CS5 C19 C20 SINGLE NONE 28
CS5 C20 C31 SINGLE NONE 29
CS5 C20 C27 DOUBLE NONE 30
CS5 C21 C26 SINGLE NONE 31
CS5 C21 C22 DOUBLE NONE 32
CS5 C22 C23 SINGLE NONE 33
CS5 C23 C24 DOUBLE NONE 34
CS5 C23 F2 SINGLE NONE 35
CS5 C24 C25 SINGLE NONE 36
CS5 C25 F1 SINGLE NONE 37
CS5 C25 C26 DOUBLE NONE 38
CS5 C27 C28 SINGLE NONE 39
CS5 C28 C29 DOUBLE NONE 40
CS5 C29 C30 SINGLE NONE 41
CS5 C30 O4 SINGLE NONE 42
CS5 C30 C31 DOUBLE NONE 43
CS5 O4 C32 SINGLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CS5 MurckoScaffold S1 scaffold 'O=C(N[C@H](CCNCc1ccccc1)Cc1ccccc1)c1ccccc1' InChI=1S/C24H26N2O/c27-24(22-14-8-3-9-15-22)26-23(18-20-10-4-1-5-11-20)16-17-25-19-21-12-6-2-7-13-21/h1-15,23,25H,16-19H2,(H,26,27)/t23-/m1/s1 AYZZGVFZQVPMQL-HSZRJFAPSA-N
CS5 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
CS5 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CS5 C1 S1 1
CS5 C2 S1 1
CS5 C3 S1 1
CS5 C4 S1 1
CS5 C5 S1 1
CS5 C6 S1 1
CS5 C14 S1 1
CS5 N2 S1 1
CS5 O2 S1 1
CS5 C15 S1 1
CS5 C16 S1 1
CS5 C17 S1 1
CS5 C18 S1 1
CS5 N3 S1 1
CS5 C19 S1 1
CS5 C20 S1 1
CS5 C21 S1 1
CS5 C22 S1 1
CS5 C23 S1 1
CS5 C24 S1 1
CS5 C25 S1 1
CS5 C26 S1 1
CS5 C27 S1 1
CS5 C28 S1 1
CS5 C29 S1 1
CS5 C30 S1 1
CS5 C31 S1 1
CS5 N1 F1 1
CS5 C7 F1 1
CS5 O1 F1 1
CS5 C6 F1 1
CS5 N2 F1 2
CS5 C14 F1 2
CS5 O2 F1 2
CS5 C4 F1 2
CS5 C1 F2 1
CS5 C6 F2 1
CS5 C5 F2 1
CS5 C4 F2 1
CS5 C3 F2 1
CS5 C2 F2 1
CS5 C20 F2 2
CS5 C31 F2 2
CS5 C30 F2 2
CS5 C29 F2 2
CS5 C28 F2 2
CS5 C27 F2 2
CS5 C21 F2 3
CS5 C26 F2 3
CS5 C25 F2 3
CS5 C24 F2 3
CS5 C23 F2 3
CS5 C22 F2 3
#
_pdbe_chem_comp_rdkit_properties.comp_id CS5
_pdbe_chem_comp_rdkit_properties.exactmw 581.307
_pdbe_chem_comp_rdkit_properties.amw 581.704
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 20
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 42
_pdbe_chem_comp_rdkit_properties.NumAtoms 83
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.394
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 304.248
_pdbe_chem_comp_rdkit_properties.tpsa 90.900
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.300
_pdbe_chem_comp_rdkit_properties.CrippenMR 157.748
_pdbe_chem_comp_rdkit_properties.chi0v 20.231
_pdbe_chem_comp_rdkit_properties.chi1v 10.464
_pdbe_chem_comp_rdkit_properties.chi2v 4.106
_pdbe_chem_comp_rdkit_properties.chi3v 4.106
_pdbe_chem_comp_rdkit_properties.chi4v 2.540
_pdbe_chem_comp_rdkit_properties.chi0n 61.231
_pdbe_chem_comp_rdkit_properties.chi1n 30.767
_pdbe_chem_comp_rdkit_properties.chi2n 4.106
_pdbe_chem_comp_rdkit_properties.chi3n 4.106
_pdbe_chem_comp_rdkit_properties.chi4n 2.540
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.820
_pdbe_chem_comp_rdkit_properties.kappa1 8.009
_pdbe_chem_comp_rdkit_properties.kappa2 15.984
_pdbe_chem_comp_rdkit_properties.kappa3 9.633
_pdbe_chem_comp_rdkit_properties.Phi 3.048
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CS5 UniChem ChEMBL CHEMBL221597
CS5 UniChem PDBe CS5
CS5 UniChem ZINC ZINC000003965949
CS5 UniChem SureChEMBL SCHEMBL5351077
CS5 UniChem 'PubChem TPHARMA' 14886793
CS5 UniChem 'PubChem TPHARMA' 15109656
CS5 UniChem BindingDb 15798
CS5 UniChem PubChem 9916309
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CS5 C1 4.131 0.849 0.076 ETKDGv3 1
CS5 C2 3.092 0.308 0.981 ETKDGv3 2
CS5 C3 1.913 -0.089 0.477 ETKDGv3 3
CS5 C4 1.628 0.043 -0.976 ETKDGv3 4
CS5 C5 2.587 0.529 -1.787 ETKDGv3 5
CS5 C6 3.905 0.941 -1.245 ETKDGv3 6
CS5 C7 4.937 1.481 -2.159 ETKDGv3 7
CS5 N1 6.346 1.239 -1.947 ETKDGv3 8
CS5 O1 4.565 2.161 -3.155 ETKDGv3 9
CS5 C8 6.807 -0.120 -1.611 ETKDGv3 10
CS5 C9 7.717 -0.128 -0.374 ETKDGv3 11
CS5 C10 8.119 -1.551 0.001 ETKDGv3 12
CS5 C11 7.319 2.220 -2.458 ETKDGv3 13
CS5 C12 7.239 3.551 -1.696 ETKDGv3 14
CS5 C13 7.655 3.413 -0.235 ETKDGv3 15
CS5 C14 0.323 -0.393 -1.531 ETKDGv3 16
CS5 N2 -0.838 -0.493 -0.690 ETKDGv3 17
CS5 O2 0.230 -0.679 -2.757 ETKDGv3 18
CS5 C15 -2.064 -1.181 -1.118 ETKDGv3 19
CS5 C16 -3.271 -0.706 -0.262 ETKDGv3 20
CS5 C17 -1.843 -2.718 -1.150 ETKDGv3 21
CS5 O3 -3.078 -1.046 1.088 ETKDGv3 22
CS5 C18 -4.618 -1.275 -0.773 ETKDGv3 23
CS5 N3 -5.787 -0.696 -0.091 ETKDGv3 24
CS5 C19 -6.036 0.700 -0.473 ETKDGv3 25
CS5 C20 -7.431 1.085 -0.069 ETKDGv3 26
CS5 C21 -1.403 -3.304 0.172 ETKDGv3 27
CS5 C22 -2.291 -3.881 1.003 ETKDGv3 28
CS5 C23 -1.850 -4.423 2.306 ETKDGv3 29
CS5 C24 -0.562 -4.352 2.661 ETKDGv3 30
CS5 C25 0.424 -3.743 1.746 ETKDGv3 31
CS5 C26 0.029 -3.255 0.564 ETKDGv3 32
CS5 C27 -8.471 0.848 -0.886 ETKDGv3 33
CS5 C28 -9.842 1.193 -0.463 ETKDGv3 34
CS5 C29 -10.058 1.726 0.744 ETKDGv3 35
CS5 C30 -8.930 1.973 1.669 ETKDGv3 36
CS5 C31 -7.677 1.663 1.276 ETKDGv3 37
CS5 O4 -9.216 2.524 2.928 ETKDGv3 38
CS5 C32 -8.242 2.817 3.926 ETKDGv3 39
CS5 C33 3.393 0.125 2.439 ETKDGv3 40
CS5 F2 -2.756 -4.987 3.143 ETKDGv3 41
CS5 F1 1.732 -3.688 2.101 ETKDGv3 42
CS5 H1 5.066 1.188 0.495 ETKDGv3 43
CS5 H3 1.178 -0.532 1.136 ETKDGv3 44
CS5 H5 2.407 0.624 -2.851 ETKDGv3 45
CS5 H81 7.358 -0.540 -2.481 ETKDGv3 46
CS5 H82 5.942 -0.793 -1.425 ETKDGv3 47
CS5 H91 8.639 0.457 -0.571 ETKDGv3 48
CS5 H92 7.193 0.329 0.489 ETKDGv3 49
CS5 H101 8.783 -1.527 0.891 ETKDGv3 50
CS5 H102 8.666 -2.031 -0.838 ETKDGv3 51
CS5 H103 7.219 -2.154 0.247 ETKDGv3 52
CS5 H111 8.356 1.825 -2.404 ETKDGv3 53
CS5 H112 7.117 2.412 -3.534 ETKDGv3 54
CS5 H121 7.916 4.282 -2.188 ETKDGv3 55
CS5 H122 6.207 3.961 -1.748 ETKDGv3 56
CS5 H131 8.678 2.987 -0.160 ETKDGv3 57
CS5 H132 7.654 4.414 0.246 ETKDGv3 58
CS5 H133 6.941 2.765 0.312 ETKDGv3 59
CS5 HN2 -0.830 -0.002 0.232 ETKDGv3 60
CS5 H15 -2.284 -0.865 -2.163 ETKDGv3 61
CS5 H16 -3.297 0.403 -0.375 ETKDGv3 62
CS5 H171 -1.061 -2.946 -1.905 ETKDGv3 63
CS5 H172 -2.753 -3.232 -1.521 ETKDGv3 64
CS5 HO3 -3.412 -0.289 1.636 ETKDGv3 65
CS5 H181 -4.706 -1.123 -1.871 ETKDGv3 66
CS5 H182 -4.643 -2.370 -0.601 ETKDGv3 67
CS5 HN3 -5.661 -0.755 0.947 ETKDGv3 68
CS5 H191 -5.311 1.376 0.032 ETKDGv3 69
CS5 H192 -5.918 0.839 -1.572 ETKDGv3 70
CS5 H22 -3.338 -3.943 0.738 ETKDGv3 71
CS5 H24 -0.238 -4.745 3.616 ETKDGv3 72
CS5 H26 0.761 -2.832 -0.110 ETKDGv3 73
CS5 H27 -8.318 0.401 -1.861 ETKDGv3 74
CS5 H28 -10.673 1.010 -1.132 ETKDGv3 75
CS5 H29 -11.066 1.976 1.050 ETKDGv3 76
CS5 H31 -6.832 1.827 1.932 ETKDGv3 77
CS5 H321 -7.514 3.563 3.542 ETKDGv3 78
CS5 H322 -8.751 3.243 4.815 ETKDGv3 79
CS5 H323 -7.715 1.888 4.229 ETKDGv3 80
CS5 H331 2.501 0.369 3.054 ETKDGv3 81
CS5 H332 3.687 -0.929 2.627 ETKDGv3 82
CS5 H333 4.223 0.791 2.756 ETKDGv3 83
#