data_CSJ
#
_chem_comp.id CSJ
_chem_comp.name 'S-[(2-aminophenyl)carbonyl]-L-cysteine'
_chem_comp.type 'L-PEPTIDE LINKING'
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C10 H12 N2 O3 S'
_chem_comp.mon_nstd_parent_comp_id CYS
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-05-12
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 240.279
_chem_comp.one_letter_code C
_chem_comp.three_letter_code CSJ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3H77
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CSJ N N N 0 1 N N N N N N -10.470 -3.730 24.950 -3.162 1.589 0.947 N CSJ 1
CSJ CA CA C 0 1 N N R N N N -11.921 -3.559 24.592 -3.137 0.645 -0.178 CA CSJ 2
CSJ C C C 0 1 N N N N N N -12.120 -2.027 24.556 -4.357 -0.237 -0.122 C CSJ 3
CSJ O O O 0 1 N N N N N N -13.172 -1.545 24.167 -4.967 -0.359 0.914 O CSJ 4
CSJ OXT OXT O 0 1 N N N N N N -11.220 -1.100 25.150 -4.767 -0.887 -1.222 OXT CSJ 5
CSJ CB CB C 0 1 N N N N N N -12.898 -4.182 25.535 -1.878 -0.220 -0.090 CB CSJ 6
CSJ SG SG S 0 1 N N N N N N -13.044 -5.937 25.083 -0.412 0.839 -0.158 SG CSJ 7
CSJ CO CO C 0 1 N N N N N N -11.763 -6.828 25.889 0.853 -0.382 -0.040 CO CSJ 8
CSJ O2 O2 O 0 1 N N N N N N -10.864 -6.112 26.651 0.557 -1.558 0.053 O2 CSJ 9
CSJ C1 C1 C 0 1 Y N N N N N -11.705 -8.338 25.590 2.271 0.023 -0.054 C1 CSJ 10
CSJ C2 C2 C 0 1 Y N N N N N -10.527 -9.088 25.667 3.279 -0.931 0.157 C2 CSJ 11
CSJ C3 C3 C 0 1 Y N N N N N -10.534 -10.451 25.324 4.611 -0.538 0.142 C3 CSJ 12
CSJ N2 N2 N 0 1 N N N N N N -9.367 -8.553 26.084 2.947 -2.261 0.382 N2 CSJ 13
CSJ C4 C4 C 0 1 Y N N N N N -11.696 -11.059 24.894 4.939 0.784 -0.081 C4 CSJ 14
CSJ C5 C5 C 0 1 Y N N N N N -12.863 -10.300 24.811 3.946 1.728 -0.290 C5 CSJ 15
CSJ C6 C6 C 0 1 Y N N N N N -12.888 -8.945 25.160 2.620 1.355 -0.284 C6 CSJ 16
CSJ HN HN H 0 1 N N N N N N -9.922 -3.768 24.114 -3.167 1.100 1.829 HN CSJ 17
CSJ HNA HNA H 0 1 N N N N N N -10.171 -2.957 25.509 -2.388 2.234 0.895 HNA CSJ 18
CSJ HA HA H 0 1 N N N N N N -12.125 -4.076 23.643 -3.132 1.199 -1.117 HA CSJ 19
CSJ HOXT HOXT H 0 0 N N N N N N -11.607 -0.232 25.142 -5.555 -1.441 -1.137 HOXT CSJ 20
CSJ HB HB H 0 1 N N N N N N -12.540 -4.085 26.571 -1.883 -0.774 0.849 HB CSJ 21
CSJ HBA HBA H 0 1 N N N N N N -13.875 -3.681 25.468 -1.859 -0.921 -0.925 HBA CSJ 22
CSJ H3 H3 H 0 1 N N N N N N -9.623 -11.027 25.397 5.391 -1.267 0.304 H3 CSJ 23
CSJ HN2 HN2 H 0 1 N N N N N N -8.760 -8.420 25.301 2.023 -2.548 0.313 HN2 CSJ 24
CSJ HN2A HN2A H 0 0 N N N N N N -9.545 -7.671 26.521 3.638 -2.902 0.608 HN2A CSJ 25
CSJ H4 H4 H 0 1 N N N N N N -11.701 -12.105 24.626 5.977 1.086 -0.092 H4 CSJ 26
CSJ H5 H5 H 0 1 N N N N N N -13.772 -10.771 24.468 4.214 2.760 -0.463 H5 CSJ 27
CSJ H6 H6 H 0 1 N N N N N N -13.805 -8.378 25.098 1.850 2.095 -0.448 H6 CSJ 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CSJ CA N SING N N 1
CSJ N HN SING N N 2
CSJ N HNA SING N N 3
CSJ C CA SING N N 4
CSJ CA CB SING N N 5
CSJ CA HA SING N N 6
CSJ O C DOUB N N 7
CSJ C OXT SING N N 8
CSJ OXT HOXT SING N N 9
CSJ SG CB SING N N 10
CSJ CB HB SING N N 11
CSJ CB HBA SING N N 12
CSJ SG CO SING N N 13
CSJ C1 CO SING N N 14
CSJ CO O2 DOUB N N 15
CSJ C6 C1 DOUB Y N 16
CSJ C1 C2 SING Y N 17
CSJ C3 C2 DOUB Y N 18
CSJ C2 N2 SING N N 19
CSJ C4 C3 SING Y N 20
CSJ C3 H3 SING N N 21
CSJ N2 HN2 SING N N 22
CSJ N2 HN2A SING N N 23
CSJ C5 C4 DOUB Y N 24
CSJ C4 H4 SING N N 25
CSJ C5 C6 SING Y N 26
CSJ C5 H5 SING N N 27
CSJ C6 H6 SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CSJ SMILES ACDLabs 10.04 'O=C(O)C(N)CSC(=O)c1ccccc1N'
CSJ SMILES_CANONICAL CACTVS 3.341 'N[C@@H](CSC(=O)c1ccccc1N)C(O)=O'
CSJ SMILES CACTVS 3.341 'N[CH](CSC(=O)c1ccccc1N)C(O)=O'
CSJ SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'c1ccc(c(c1)C(=O)SC[C@@H](C(=O)O)N)N'
CSJ SMILES 'OpenEye OEToolkits' 1.5.0 'c1ccc(c(c1)C(=O)SCC(C(=O)O)N)N'
CSJ InChI InChI 1.03 'InChI=1S/C10H12N2O3S/c11-7-4-2-1-3-6(7)10(15)16-5-8(12)9(13)14/h1-4,8H,5,11-12H2,(H,13,14)/t8-/m0/s1'
CSJ InChIKey InChI 1.03 BYVARANRNFXKPH-QMMMGPOBSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CSJ 'SYSTEMATIC NAME' ACDLabs 10.04 'S-[(2-aminophenyl)carbonyl]-L-cysteine'
CSJ 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '(2R)-2-amino-3-(2-aminophenyl)carbonylsulfanyl-propanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CSJ 'Create component' 2009-05-12 RCSB
CSJ 'Modify aromatic_flag' 2011-06-04 RCSB
CSJ 'Modify descriptor' 2011-06-04 RCSB
CSJ 'Modify PCM' 2024-09-27 PDBE
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CSJ N N 10.301 1.410 1
CSJ CA C 9.002 2.160 2
CSJ C C 9.002 3.660 3
CSJ O O 10.301 4.410 4
CSJ OXT O 7.702 4.410 5
CSJ CB C 7.702 1.410 6
CSJ SG S 7.702 -0.090 7
CSJ CO C 6.404 -0.840 8
CSJ O2 O 5.104 -0.090 9
CSJ C1 C 6.404 -2.340 10
CSJ C2 C 5.104 -3.090 11
CSJ C3 C 5.104 -4.590 12
CSJ N2 N 3.805 -2.340 13
CSJ C4 C 6.404 -5.340 14
CSJ C5 C 7.702 -4.590 15
CSJ C6 C 7.702 -3.090 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CSJ CA N SINGLE BEGINWEDGE 1
CSJ C CA SINGLE NONE 2
CSJ CA CB SINGLE NONE 3
CSJ O C DOUBLE NONE 4
CSJ C OXT SINGLE NONE 5
CSJ SG CB SINGLE NONE 6
CSJ SG CO SINGLE NONE 7
CSJ C1 CO SINGLE NONE 8
CSJ CO O2 DOUBLE NONE 9
CSJ C6 C1 DOUBLE NONE 10
CSJ C1 C2 SINGLE NONE 11
CSJ C3 C2 DOUBLE NONE 12
CSJ C2 N2 SINGLE NONE 13
CSJ C4 C3 SINGLE NONE 14
CSJ C5 C4 DOUBLE NONE 15
CSJ C5 C6 SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CSJ MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
CSJ peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
CSJ phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CSJ C1 S1 1
CSJ C2 S1 1
CSJ C3 S1 1
CSJ C4 S1 1
CSJ C5 S1 1
CSJ C6 S1 1
CSJ O F1 1
CSJ C F1 1
CSJ CA F1 1
CSJ N F1 1
CSJ C1 F2 1
CSJ C6 F2 1
CSJ C5 F2 1
CSJ C4 F2 1
CSJ C3 F2 1
CSJ C2 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CSJ
_pdbe_chem_comp_rdkit_properties.exactmw 240.057
_pdbe_chem_comp_rdkit_properties.amw 240.284
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.200
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 113.990
_pdbe_chem_comp_rdkit_properties.tpsa 106.410
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.119
_pdbe_chem_comp_rdkit_properties.CrippenMR 62.164
_pdbe_chem_comp_rdkit_properties.chi0v 8.344
_pdbe_chem_comp_rdkit_properties.chi1v 4.534
_pdbe_chem_comp_rdkit_properties.chi2v 1.991
_pdbe_chem_comp_rdkit_properties.chi3v 1.991
_pdbe_chem_comp_rdkit_properties.chi4v 1.163
_pdbe_chem_comp_rdkit_properties.chi0n 19.527
_pdbe_chem_comp_rdkit_properties.chi1n 9.415
_pdbe_chem_comp_rdkit_properties.chi2n 1.306
_pdbe_chem_comp_rdkit_properties.chi3n 1.306
_pdbe_chem_comp_rdkit_properties.chi4n 0.641
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.530
_pdbe_chem_comp_rdkit_properties.kappa1 3.747
_pdbe_chem_comp_rdkit_properties.kappa2 5.525
_pdbe_chem_comp_rdkit_properties.kappa3 3.249
_pdbe_chem_comp_rdkit_properties.Phi 1.294
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CSJ UniChem PDBe CSJ
CSJ UniChem ChEBI 134405
CSJ UniChem ZINC ZINC000058638350
CSJ UniChem PubChem 49866837
CSJ UniChem MetaboLights MTBLC134405
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CSJ N 1.488 -0.036 0.582 ETKDGv3 1
CSJ CA 2.467 0.015 -0.504 ETKDGv3 2
CSJ C 2.984 1.417 -0.681 ETKDGv3 3
CSJ O 4.156 1.605 -1.102 ETKDGv3 4
CSJ OXT 2.158 2.508 -0.422 ETKDGv3 5
CSJ CB 1.861 -0.519 -1.816 ETKDGv3 6
CSJ SG 0.489 0.522 -2.450 ETKDGv3 7
CSJ CO -0.831 -0.468 -1.737 ETKDGv3 8
CSJ O2 -1.270 -1.451 -2.391 ETKDGv3 9
CSJ C1 -1.433 -0.117 -0.432 ETKDGv3 10
CSJ C2 -1.875 -1.172 0.537 ETKDGv3 11
CSJ C3 -2.502 -0.808 1.669 ETKDGv3 12
CSJ N2 -1.579 -2.558 0.317 ETKDGv3 13
CSJ C4 -2.722 0.616 1.982 ETKDGv3 14
CSJ C5 -2.290 1.560 1.142 ETKDGv3 15
CSJ C6 -1.621 1.180 -0.117 ETKDGv3 16
CSJ HN 1.225 -1.036 0.740 ETKDGv3 17
CSJ HNA 1.956 0.279 1.463 ETKDGv3 18
CSJ HA 3.327 -0.641 -0.236 ETKDGv3 19
CSJ HOXT 2.491 3.455 -0.555 ETKDGv3 20
CSJ HB 1.531 -1.571 -1.679 ETKDGv3 21
CSJ HBA 2.655 -0.535 -2.593 ETKDGv3 22
CSJ H3 -2.820 -1.555 2.386 ETKDGv3 23
CSJ HN2 -0.901 -2.864 -0.414 ETKDGv3 24
CSJ HN2A -1.957 -3.292 0.956 ETKDGv3 25
CSJ H4 -3.220 0.894 2.902 ETKDGv3 26
CSJ H5 -2.444 2.605 1.375 ETKDGv3 27
CSJ H6 -1.324 1.969 -0.797 ETKDGv3 28
#