data_CUT
#
_chem_comp.id CUT
_chem_comp.name "[2,4-bis(oxidanyl)phenyl]-phenyl-methanone"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H10 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-12-05
_chem_comp.pdbx_modified_date 2018-06-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 214.217
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CUT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6F66
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CUT C10 C1 C 0 1 Y N N N N N -7.949 -12.139 31.536 -1.304 0.002 -1.002 C10 CUT 1
CUT C13 C2 C 0 1 Y N N N N N -9.213 -10.326 29.817 -2.779 -0.220 1.344 C13 CUT 2
CUT C01 C3 C 0 1 Y N N N N N -14.350 -11.893 32.453 3.965 1.380 0.272 C01 CUT 3
CUT C02 C4 C 0 1 Y N N N N N -13.469 -11.006 33.049 4.147 0.027 0.044 C02 CUT 4
CUT C03 C5 C 0 1 Y N N N N N -12.117 -11.301 33.086 3.058 -0.816 -0.022 C03 CUT 5
CUT C04 C6 C 0 1 Y N N N N N -11.635 -12.478 32.540 1.770 -0.303 0.141 C04 CUT 6
CUT C05 C7 C 0 1 Y N N N N N -12.519 -13.308 31.894 1.593 1.063 0.371 C05 CUT 7
CUT C06 C8 C 0 1 Y N N N N N -13.864 -13.019 31.861 2.691 1.895 0.440 C06 CUT 8
CUT C07 C9 C 0 1 N N N N N N -10.145 -12.782 32.534 0.598 -1.201 0.071 C07 CUT 9
CUT O08 O1 O 0 1 N N N N N N -9.623 -13.604 33.220 0.758 -2.403 -0.031 O08 CUT 10
CUT C09 C10 C 0 1 Y N N N N N -9.319 -11.960 31.567 -0.763 -0.642 0.123 C09 CUT 11
CUT C11 C11 C 0 1 Y N N N N N -7.203 -11.375 30.648 -2.583 0.529 -0.939 C11 CUT 12
CUT C12 C12 C 0 1 Y N N N N N -7.826 -10.473 29.810 -3.320 0.419 0.232 C12 CUT 13
CUT C14 C13 C 0 1 Y N N N N N -9.960 -11.066 30.712 -1.522 -0.749 1.293 C14 CUT 14
CUT O15 O2 O 0 1 N N N N N N -7.044 -9.712 28.920 -4.571 0.941 0.294 O15 CUT 15
CUT O16 O3 O 0 1 N N N N N N -7.380 -13.054 32.439 -0.577 0.112 -2.141 O16 CUT 16
CUT H131 H1 H 0 0 N N N N N N -9.695 -9.644 29.133 -3.361 -0.305 2.250 H131 CUT 17
CUT H011 H2 H 0 0 N N N N N N -15.411 -11.694 32.458 4.821 2.037 0.324 H011 CUT 18
CUT H021 H3 H 0 0 N N N N N N -13.835 -10.088 33.483 5.144 -0.368 -0.082 H021 CUT 19
CUT H031 H4 H 0 0 N N N N N N -11.431 -10.605 33.546 3.201 -1.872 -0.200 H031 CUT 20
CUT H051 H5 H 0 0 N N N N N N -12.153 -14.199 31.406 0.600 1.467 0.497 H051 CUT 21
CUT H061 H6 H 0 0 N N N N N N -14.542 -13.693 31.360 2.556 2.952 0.618 H061 CUT 22
CUT H111 H7 H 0 0 N N N N N N -6.129 -11.487 30.613 -3.006 1.026 -1.799 H111 CUT 23
CUT H141 H8 H 0 0 N N N N N N -11.033 -10.953 30.749 -1.109 -1.243 2.161 H141 CUT 24
CUT H151 H9 H 0 0 N N N N N N -6.127 -9.928 29.040 -4.599 1.860 0.591 H151 CUT 25
CUT H161 H10 H 0 0 N N N N N N -8.069 -13.474 32.941 -0.693 -0.626 -2.755 H161 CUT 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CUT O15 C12 SING N N 1
CUT C12 C13 DOUB Y N 2
CUT C12 C11 SING Y N 3
CUT C13 C14 SING Y N 4
CUT C11 C10 DOUB Y N 5
CUT C14 C09 DOUB Y N 6
CUT C10 C09 SING Y N 7
CUT C10 O16 SING N N 8
CUT C09 C07 SING N N 9
CUT C06 C05 DOUB Y N 10
CUT C06 C01 SING Y N 11
CUT C05 C04 SING Y N 12
CUT C01 C02 DOUB Y N 13
CUT C07 C04 SING N N 14
CUT C07 O08 DOUB N N 15
CUT C04 C03 DOUB Y N 16
CUT C02 C03 SING Y N 17
CUT C13 H131 SING N N 18
CUT C01 H011 SING N N 19
CUT C02 H021 SING N N 20
CUT C03 H031 SING N N 21
CUT C05 H051 SING N N 22
CUT C06 H061 SING N N 23
CUT C11 H111 SING N N 24
CUT C14 H141 SING N N 25
CUT O15 H151 SING N N 26
CUT O16 H161 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CUT InChI InChI 1.03 InChI=1S/C13H10O3/c14-10-6-7-11(12(15)8-10)13(16)9-4-2-1-3-5-9/h1-8,14-15H
CUT InChIKey InChI 1.03 ZXDDPOHVAMWLBH-UHFFFAOYSA-N
CUT SMILES_CANONICAL CACTVS 3.385 Oc1ccc(c(O)c1)C(=O)c2ccccc2
CUT SMILES CACTVS 3.385 Oc1ccc(c(O)c1)C(=O)c2ccccc2
CUT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)C(=O)c2ccc(cc2O)O
CUT SMILES "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)C(=O)c2ccc(cc2O)O
#
_pdbx_chem_comp_identifier.comp_id CUT
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier "[2,4-bis(oxidanyl)phenyl]-phenyl-methanone"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CUT 'Create component' 2017-12-05 RCSB
CUT 'Initial release' 2018-06-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CUT C10 C 5.104 -0.517 1
CUT C13 C 7.702 -2.018 2
CUT C01 C 10.301 3.982 3
CUT C02 C 9.002 4.732 4
CUT C03 C 7.702 3.982 5
CUT C04 C 7.702 2.482 6
CUT C05 C 9.002 1.732 7
CUT C06 C 10.301 2.482 8
CUT C07 C 6.404 1.732 9
CUT O08 O 5.104 2.482 10
CUT C09 C 6.404 0.233 11
CUT C11 C 5.104 -2.018 12
CUT C12 C 6.404 -2.768 13
CUT C14 C 7.702 -0.517 14
CUT O15 O 6.404 -4.268 15
CUT O16 O 3.805 0.233 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CUT O15 C12 SINGLE NONE 1
CUT C12 C13 DOUBLE NONE 2
CUT C12 C11 SINGLE NONE 3
CUT C13 C14 SINGLE NONE 4
CUT C11 C10 DOUBLE NONE 5
CUT C14 C09 DOUBLE NONE 6
CUT C10 C09 SINGLE NONE 7
CUT C10 O16 SINGLE NONE 8
CUT C09 C07 SINGLE NONE 9
CUT C06 C05 SINGLE NONE 10
CUT C06 C01 DOUBLE NONE 11
CUT C05 C04 DOUBLE NONE 12
CUT C01 C02 SINGLE NONE 13
CUT C07 C04 SINGLE NONE 14
CUT C07 O08 DOUBLE NONE 15
CUT C04 C03 SINGLE NONE 16
CUT C02 C03 DOUBLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CUT MurckoScaffold S1 scaffold O=C(c1ccccc1)c1ccccc1 InChI=1S/C13H10O/c14-13(11-7-3-1-4-8-11)12-9-5-2-6-10-12/h1-10H RWCCWEUUXYIKHB-UHFFFAOYSA-N
CUT phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CUT C10 S1 1
CUT C13 S1 1
CUT C01 S1 1
CUT C02 S1 1
CUT C03 S1 1
CUT C04 S1 1
CUT C05 S1 1
CUT C06 S1 1
CUT C07 S1 1
CUT O08 S1 1
CUT C09 S1 1
CUT C11 S1 1
CUT C12 S1 1
CUT C14 S1 1
CUT C10 F1 1
CUT C11 F1 1
CUT C12 F1 1
CUT C13 F1 1
CUT C14 F1 1
CUT C09 F1 1
CUT C01 F1 2
CUT C06 F1 2
CUT C05 F1 2
CUT C04 F1 2
CUT C03 F1 2
CUT C02 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id CUT
_pdbe_chem_comp_rdkit_properties.exactmw 214.063
_pdbe_chem_comp_rdkit_properties.amw 214.220
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 106.826
_pdbe_chem_comp_rdkit_properties.tpsa 57.530
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.295
_pdbe_chem_comp_rdkit_properties.CrippenMR 57.894
_pdbe_chem_comp_rdkit_properties.chi0v 7.725
_pdbe_chem_comp_rdkit_properties.chi1v 4.112
_pdbe_chem_comp_rdkit_properties.chi2v 1.709
_pdbe_chem_comp_rdkit_properties.chi3v 1.709
_pdbe_chem_comp_rdkit_properties.chi4v 1.021
_pdbe_chem_comp_rdkit_properties.chi0n 17.725
_pdbe_chem_comp_rdkit_properties.chi1n 8.929
_pdbe_chem_comp_rdkit_properties.chi2n 1.709
_pdbe_chem_comp_rdkit_properties.chi3n 1.709
_pdbe_chem_comp_rdkit_properties.chi4n 1.021
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.290
_pdbe_chem_comp_rdkit_properties.kappa1 3.627
_pdbe_chem_comp_rdkit_properties.kappa2 4.063
_pdbe_chem_comp_rdkit_properties.kappa3 1.883
_pdbe_chem_comp_rdkit_properties.Phi 0.921
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CUT UniChem ChEMBL CHEMBL1392
CUT UniChem PDBe CUT
CUT UniChem 'KEGG LIGAND' C14215
CUT UniChem ChEBI 34240
CUT UniChem ZINC ZINC000000225430
CUT UniChem fdasrs LJ54R4Z029
CUT UniChem HMDB HMDB0240715
CUT UniChem ACTor 120920-25-4
CUT UniChem ACTor 131-56-6
CUT UniChem 'EPA CompTox Dashboard' DTXSID8022406
CUT UniChem BRENDA 12127
CUT UniChem BRENDA 174809
CUT UniChem ChemicalBook CB11263726
CUT UniChem ChemicalBook CB5475441
CUT UniChem rxnorm BENZORESORCINOL
CUT UniChem 'Probes And Drugs' PD158995
CUT UniChem BindingDb 51223
CUT UniChem eMolecules 479942
CUT UniChem SureChEMBL SCHEMBL39681
CUT UniChem 'PubChem TPHARMA' 15171997
CUT UniChem PubChem 8572
CUT UniChem Mcule MCULE-3025914301
CUT UniChem Nikkaji J5.561A
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CUT C10 2.100 -1.222 0.072 ETKDGv3 1
CUT C13 2.418 1.339 -1.080 ETKDGv3 2
CUT C01 -3.963 0.896 0.858 ETKDGv3 3
CUT C02 -2.631 1.334 1.319 ETKDGv3 4
CUT C03 -1.531 0.703 0.891 ETKDGv3 5
CUT C04 -1.637 -0.441 -0.057 ETKDGv3 6
CUT C05 -2.861 -0.840 -0.458 ETKDGv3 7
CUT C06 -4.072 -0.138 0.017 ETKDGv3 8
CUT C07 -0.419 -1.147 -0.530 ETKDGv3 9
CUT O08 -0.517 -2.316 -0.995 ETKDGv3 10
CUT C09 0.915 -0.509 -0.496 ETKDGv3 11
CUT C11 3.311 -0.651 0.010 ETKDGv3 12
CUT C12 3.481 0.691 -0.590 ETKDGv3 13
CUT C14 1.083 0.712 -1.038 ETKDGv3 14
CUT O15 4.739 1.285 -0.644 ETKDGv3 15
CUT O16 1.979 -2.465 0.695 ETKDGv3 16
CUT H131 2.533 2.321 -1.520 ETKDGv3 17
CUT H011 -4.849 1.410 1.206 ETKDGv3 18
CUT H021 -2.548 2.162 2.010 ETKDGv3 19
CUT H031 -0.564 1.027 1.256 ETKDGv3 20
CUT H051 -2.980 -1.670 -1.143 ETKDGv3 21
CUT H061 -5.048 -0.463 -0.320 ETKDGv3 22
CUT H111 4.172 -1.163 0.422 ETKDGv3 23
CUT H141 0.246 1.243 -1.476 ETKDGv3 24
CUT H151 5.558 0.814 -0.278 ETKDGv3 25
CUT H161 1.085 -2.914 0.847 ETKDGv3 26
#