data_CVL
#
_chem_comp.id CVL
_chem_comp.name
5-[4-methoxy-3-[4-[4-(1~{H}-1,2,3,4-tetrazol-5-yl)phenoxy]butoxy]phenyl]-4,4-dimethyl-2-propan-2-yl-pyrazol-3-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H32 N6 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-06-13
_chem_comp.pdbx_modified_date 2018-03-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 492.570
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CVL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5L9H
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CVL C1 C1 C 0 1 N N N N N N 142.010 12.036 1.158 3.774 -5.779 0.001 C1 CVL 1
CVL O1 O1 O 0 1 N N N N N N 141.119 12.646 0.224 2.915 -4.638 0.000 O1 CVL 2
CVL C2 C2 C 0 1 Y N N N N N 140.580 11.881 -0.772 3.511 -3.416 0.001 C2 CVL 3
CVL C3 C3 C 0 1 Y N N N N N 140.363 10.515 -0.712 4.895 -3.322 0.001 C3 CVL 4
CVL C4 C4 C 0 1 Y N N N N N 139.786 9.848 -1.782 5.505 -2.086 0.001 C4 CVL 5
CVL C5 C5 C 0 1 Y N N N N N 139.420 10.540 -2.936 4.729 -0.924 0.000 C5 CVL 6
CVL C6 C6 C 0 1 N N N N N N 138.787 9.854 -4.066 5.380 0.399 -0.000 C6 CVL 7
CVL N1 N1 N 0 1 N N N N N N 137.925 10.476 -4.798 4.786 1.549 -0.001 N1 CVL 8
CVL N2 N2 N 0 1 N N N N N N 137.763 9.738 -5.940 5.679 2.617 -0.000 N2 CVL 9
CVL C7 C7 C 0 1 N N N N N N 137.004 10.369 -7.064 5.283 4.027 -0.005 C7 CVL 10
CVL C8 C8 C 0 1 N N N N N N 136.835 9.431 -8.249 4.450 4.318 -1.255 C8 CVL 11
CVL C9 C9 C 0 1 N N N N N N 135.675 10.871 -6.527 4.451 4.327 1.243 C9 CVL 12
CVL C10 C10 C 0 1 N N N N N N 138.322 8.496 -5.853 6.957 2.185 0.000 C10 CVL 13
CVL O2 O2 O 0 1 N N N N N N 138.303 7.586 -6.650 7.963 2.864 0.001 O2 CVL 14
CVL C11 C11 C 0 1 N N N N N N 138.995 8.419 -4.496 6.870 0.672 0.006 C11 CVL 15
CVL C12 C12 C 0 1 N N N N N N 138.251 7.426 -3.590 7.521 0.090 -1.250 C12 CVL 16
CVL C13 C13 C 0 1 N N N N N N 140.471 8.024 -4.643 7.523 0.100 1.266 C13 CVL 17
CVL C14 C14 C 0 1 Y N N N N N 139.616 11.921 -2.993 3.335 -1.019 -0.001 C14 CVL 18
CVL C15 C15 C 0 1 Y N N N N N 140.202 12.591 -1.929 2.731 -2.262 -0.006 C15 CVL 19
CVL O3 O3 O 0 1 N N N N N N 140.431 13.942 -1.955 1.374 -2.358 -0.007 O3 CVL 20
CVL C16 C16 C 0 1 N N N N N N 141.263 14.466 -3.005 0.637 -1.134 -0.002 C16 CVL 21
CVL C17 C17 C 0 1 N N N N N N 140.824 15.887 -3.267 -0.862 -1.442 -0.004 C17 CVL 22
CVL C18 C18 C 0 1 N N N N N N 140.616 16.285 -4.722 -1.651 -0.131 0.001 C18 CVL 23
CVL C19 C19 C 0 1 N N N N N N 139.265 16.888 -5.007 -3.150 -0.438 -0.001 C19 CVL 24
CVL O4 O4 O 0 1 N N N N N N 138.282 15.877 -4.730 -3.887 0.786 0.003 O4 CVL 25
CVL C20 C20 C 0 1 Y N N N N N 136.997 16.038 -5.185 -5.242 0.689 0.002 C20 CVL 26
CVL C21 C21 C 0 1 Y N N N N N 136.323 17.245 -5.102 -6.018 1.841 0.006 C21 CVL 27
CVL C22 C22 C 0 1 Y N N N N N 135.023 17.341 -5.570 -7.394 1.747 0.006 C22 CVL 28
CVL C23 C23 C 0 1 Y N N N N N 134.381 16.239 -6.130 -8.006 0.493 0.001 C23 CVL 29
CVL C24 C24 C 0 1 Y N N N N N 133.007 16.340 -6.622 -9.481 0.388 0.000 C24 CVL 30
CVL N3 N3 N 0 1 Y N N N N N 132.353 17.461 -6.896 -10.208 -0.757 -0.004 N3 CVL 31
CVL N4 N4 N 0 1 Y N N N N N 131.111 17.089 -7.305 -11.551 -0.340 -0.003 N4 CVL 32
CVL N5 N5 N 0 1 Y N N N N N 131.001 15.802 -7.285 -11.544 0.948 0.003 N5 CVL 33
CVL N6 N6 N 0 1 Y N N N N N 132.180 15.317 -6.861 -10.337 1.389 0.009 N6 CVL 34
CVL C25 C25 C 0 1 Y N N N N N 135.069 15.036 -6.208 -7.223 -0.662 -0.004 C25 CVL 35
CVL C26 C26 C 0 1 Y N N N N N 136.369 14.936 -5.745 -5.848 -0.560 -0.008 C26 CVL 36
CVL H1 H1 H 0 1 N N N N N N 142.349 12.787 1.887 3.172 -6.688 0.001 H1 CVL 37
CVL H2 H2 H 0 1 N N N N N N 141.489 11.223 1.685 4.404 -5.761 -0.889 H2 CVL 38
CVL H3 H3 H 0 1 N N N N N N 142.879 11.627 0.622 4.403 -5.760 0.891 H3 CVL 39
CVL H4 H4 H 0 1 N N N N N N 140.645 9.965 0.174 5.496 -4.219 0.002 H4 CVL 40
CVL H5 H5 H 0 1 N N N N N N 139.619 8.783 -1.721 6.583 -2.015 0.002 H5 CVL 41
CVL H8 H8 H 0 1 N N N N N N 137.575 11.243 -7.410 6.174 4.655 -0.008 H8 CVL 42
CVL H9 H9 H 0 1 N N N N N N 137.824 9.098 -8.598 5.042 4.104 -2.145 H9 CVL 43
CVL H10 H10 H 0 1 N N N N N N 136.241 8.557 -7.943 3.559 3.690 -1.252 H10 CVL 44
CVL H11 H11 H 0 1 N N N N N N 136.318 9.959 -9.064 4.154 5.367 -1.259 H11 CVL 45
CVL H12 H12 H 0 1 N N N N N N 135.854 11.543 -5.674 5.045 4.120 2.134 H12 CVL 46
CVL H13 H13 H 0 1 N N N N N N 135.143 11.418 -7.319 4.156 5.377 1.240 H13 CVL 47
CVL H14 H14 H 0 1 N N N N N N 135.066 10.016 -6.199 3.560 3.699 1.246 H14 CVL 48
CVL H15 H15 H 0 1 N N N N N N 138.748 7.379 -2.610 8.576 0.361 -1.271 H15 CVL 49
CVL H16 H16 H 0 1 N N N N N N 137.211 7.759 -3.458 7.425 -0.996 -1.240 H16 CVL 50
CVL H17 H17 H 0 1 N N N N N N 138.261 6.429 -4.054 7.025 0.490 -2.135 H17 CVL 51
CVL H18 H18 H 0 1 N N N N N N 140.939 7.974 -3.649 7.028 0.507 2.148 H18 CVL 52
CVL H19 H19 H 0 1 N N N N N N 140.540 7.040 -5.130 7.427 -0.986 1.264 H19 CVL 53
CVL H20 H20 H 0 1 N N N N N N 140.992 8.774 -5.256 8.578 0.371 1.283 H20 CVL 54
CVL H21 H21 H 0 1 N N N N N N 139.310 12.471 -3.871 2.732 -0.123 -0.001 H21 CVL 55
CVL H22 H22 H 0 1 N N N N N N 141.142 13.862 -3.916 0.889 -0.561 0.890 H22 CVL 56
CVL H23 H23 H 0 1 N N N N N N 142.317 14.451 -2.692 0.890 -0.554 -0.890 H23 CVL 57
CVL H24 H24 H 0 1 N N N N N N 141.590 16.555 -2.846 -1.114 -2.015 -0.896 H24 CVL 58
CVL H25 H25 H 0 1 N N N N N N 139.871 16.043 -2.740 -1.115 -2.021 0.884 H25 CVL 59
CVL H26 H26 H 0 1 N N N N N N 140.732 15.387 -5.346 -1.399 0.442 0.893 H26 CVL 60
CVL H27 H27 H 0 1 N N N N N N 141.387 17.021 -4.992 -1.398 0.449 -0.887 H27 CVL 61
CVL H28 H28 H 0 1 N N N N N N 139.204 17.194 -6.062 -3.402 -1.012 -0.893 H28 CVL 62
CVL H29 H29 H 0 1 N N N N N N 139.099 17.763 -4.361 -3.403 -1.018 0.887 H29 CVL 63
CVL H30 H30 H 0 1 N N N N N N 136.810 18.109 -4.674 -5.544 2.811 0.010 H30 CVL 64
CVL H31 H31 H 0 1 N N N N N N 134.500 18.283 -5.500 -7.997 2.643 0.010 H31 CVL 65
CVL H32 H32 H 0 1 N N N N N N 132.704 18.394 -6.817 -9.874 -1.667 -0.009 H32 CVL 66
CVL H33 H33 H 0 1 N N N N N N 134.585 14.170 -6.634 -7.693 -1.634 -0.007 H33 CVL 67
CVL H34 H34 H 0 1 N N N N N N 136.896 13.996 -5.820 -5.241 -1.454 -0.012 H34 CVL 68
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CVL C8 C7 SING N N 1
CVL N4 N5 DOUB Y N 2
CVL N4 N3 SING Y N 3
CVL N5 N6 SING Y N 4
CVL C7 C9 SING N N 5
CVL C7 N2 SING N N 6
CVL N3 C24 SING Y N 7
CVL N6 C24 DOUB Y N 8
CVL O2 C10 DOUB N N 9
CVL C24 C23 SING N N 10
CVL C25 C23 DOUB Y N 11
CVL C25 C26 SING Y N 12
CVL C23 C22 SING Y N 13
CVL N2 C10 SING N N 14
CVL N2 N1 SING N N 15
CVL C10 C11 SING N N 16
CVL C26 C20 DOUB Y N 17
CVL C22 C21 DOUB Y N 18
CVL C20 C21 SING Y N 19
CVL C20 O4 SING N N 20
CVL C19 O4 SING N N 21
CVL C19 C18 SING N N 22
CVL N1 C6 DOUB N N 23
CVL C18 C17 SING N N 24
CVL C13 C11 SING N N 25
CVL C11 C6 SING N N 26
CVL C11 C12 SING N N 27
CVL C6 C5 SING N N 28
CVL C17 C16 SING N N 29
CVL C16 O3 SING N N 30
CVL C14 C5 DOUB Y N 31
CVL C14 C15 SING Y N 32
CVL C5 C4 SING Y N 33
CVL O3 C15 SING N N 34
CVL C15 C2 DOUB Y N 35
CVL C4 C3 DOUB Y N 36
CVL C2 C3 SING Y N 37
CVL C2 O1 SING N N 38
CVL O1 C1 SING N N 39
CVL C1 H1 SING N N 40
CVL C1 H2 SING N N 41
CVL C1 H3 SING N N 42
CVL C3 H4 SING N N 43
CVL C4 H5 SING N N 44
CVL C7 H8 SING N N 45
CVL C8 H9 SING N N 46
CVL C8 H10 SING N N 47
CVL C8 H11 SING N N 48
CVL C9 H12 SING N N 49
CVL C9 H13 SING N N 50
CVL C9 H14 SING N N 51
CVL C12 H15 SING N N 52
CVL C12 H16 SING N N 53
CVL C12 H17 SING N N 54
CVL C13 H18 SING N N 55
CVL C13 H19 SING N N 56
CVL C13 H20 SING N N 57
CVL C14 H21 SING N N 58
CVL C16 H22 SING N N 59
CVL C16 H23 SING N N 60
CVL C17 H24 SING N N 61
CVL C17 H25 SING N N 62
CVL C18 H26 SING N N 63
CVL C18 H27 SING N N 64
CVL C19 H28 SING N N 65
CVL C19 H29 SING N N 66
CVL C21 H30 SING N N 67
CVL C22 H31 SING N N 68
CVL N3 H32 SING N N 69
CVL C25 H33 SING N N 70
CVL C26 H34 SING N N 71
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CVL InChI InChI 1.03 InChI=1S/C26H32N6O4/c1-17(2)32-25(33)26(3,4)23(29-32)19-10-13-21(34-5)22(16-19)36-15-7-6-14-35-20-11-8-18(9-12-20)24-27-30-31-28-24/h8-13,16-17H,6-7,14-15H2,1-5H3,(H,27,28,30,31)
CVL InChIKey InChI 1.03 LSMMVMRAIOYJHV-UHFFFAOYSA-N
CVL SMILES_CANONICAL CACTVS 3.385 COc1ccc(cc1OCCCCOc2ccc(cc2)c3[nH]nnn3)C4=NN(C(C)C)C(=O)C4(C)C
CVL SMILES CACTVS 3.385 COc1ccc(cc1OCCCCOc2ccc(cc2)c3[nH]nnn3)C4=NN(C(C)C)C(=O)C4(C)C
CVL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 CC(C)N1C(=O)C(C(=N1)c2ccc(c(c2)OCCCCOc3ccc(cc3)c4[nH]nnn4)OC)(C)C
CVL SMILES "OpenEye OEToolkits" 2.0.5 CC(C)N1C(=O)C(C(=N1)c2ccc(c(c2)OCCCCOc3ccc(cc3)c4[nH]nnn4)OC)(C)C
#
_pdbx_chem_comp_identifier.comp_id CVL
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier
5-[4-methoxy-3-[4-[4-(1~{H}-1,2,3,4-tetrazol-5-yl)phenoxy]butoxy]phenyl]-4,4-dimethyl-2-propan-2-yl-pyrazol-3-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CVL 'Create component' 2016-06-13 EBI
CVL 'Initial release' 2018-03-14 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CVL C1 C 17.990 -1.544 1
CVL O1 O 16.691 -0.794 2
CVL C2 C 16.691 0.706 3
CVL C3 C 17.990 1.456 4
CVL C4 C 17.990 2.956 5
CVL C5 C 16.691 3.706 6
CVL C6 C 16.691 5.206 7
CVL N1 N 17.905 6.088 8
CVL N2 N 17.441 7.514 9
CVL C7 C 18.323 8.728 10
CVL C8 C 19.815 8.571 11
CVL C9 C 17.713 10.098 12
CVL C10 C 15.941 7.514 13
CVL O2 O 15.059 8.728 14
CVL C11 C 15.478 6.088 15
CVL C12 C 14.596 4.874 16
CVL C13 C 14.051 6.551 17
CVL C14 C 15.392 2.956 18
CVL C15 C 15.392 1.456 19
CVL O3 O 14.093 0.706 20
CVL C16 C 14.093 -0.794 21
CVL C17 C 12.794 -1.544 22
CVL C18 C 12.794 -3.044 23
CVL C19 C 11.495 -3.794 24
CVL O4 O 11.495 -5.294 25
CVL C20 C 10.196 -6.044 26
CVL C21 C 10.196 -7.544 27
CVL C22 C 8.897 -8.294 28
CVL C23 C 7.598 -7.544 29
CVL C24 C 6.299 -8.294 30
CVL N3 N 4.928 -7.684 31
CVL N4 N 3.925 -8.799 32
CVL N5 N 4.675 -10.098 33
CVL N6 N 6.142 -9.786 34
CVL C25 C 7.598 -6.044 35
CVL C26 C 8.897 -5.294 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CVL C8 C7 SINGLE NONE 1
CVL N4 N5 DOUBLE NONE 2
CVL N4 N3 SINGLE NONE 3
CVL N5 N6 SINGLE NONE 4
CVL C7 C9 SINGLE NONE 5
CVL C7 N2 SINGLE NONE 6
CVL N3 C24 SINGLE NONE 7
CVL N6 C24 DOUBLE NONE 8
CVL O2 C10 DOUBLE NONE 9
CVL C24 C23 SINGLE NONE 10
CVL C25 C23 DOUBLE NONE 11
CVL C25 C26 SINGLE NONE 12
CVL C23 C22 SINGLE NONE 13
CVL N2 C10 SINGLE NONE 14
CVL N2 N1 SINGLE NONE 15
CVL C10 C11 SINGLE NONE 16
CVL C26 C20 DOUBLE NONE 17
CVL C22 C21 DOUBLE NONE 18
CVL C20 C21 SINGLE NONE 19
CVL C20 O4 SINGLE NONE 20
CVL C19 O4 SINGLE NONE 21
CVL C19 C18 SINGLE NONE 22
CVL N1 C6 DOUBLE NONE 23
CVL C18 C17 SINGLE NONE 24
CVL C13 C11 SINGLE NONE 25
CVL C11 C6 SINGLE NONE 26
CVL C11 C12 SINGLE NONE 27
CVL C6 C5 SINGLE NONE 28
CVL C17 C16 SINGLE NONE 29
CVL C16 O3 SINGLE NONE 30
CVL C14 C5 DOUBLE NONE 31
CVL C14 C15 SINGLE NONE 32
CVL C5 C4 SINGLE NONE 33
CVL O3 C15 SINGLE NONE 34
CVL C15 C2 DOUBLE NONE 35
CVL C4 C3 DOUBLE NONE 36
CVL C2 C3 SINGLE NONE 37
CVL C2 O1 SINGLE NONE 38
CVL O1 C1 SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CVL MurckoScaffold S1 scaffold 'O=C1CC(c2cccc(OCCCCOc3ccc(-c4nnn[nH]4)cc3)c2)=NN1' InChI=1S/C20H20N6O3/c27-19-13-18(21-22-19)15-4-3-5-17(12-15)29-11-2-1-10-28-16-8-6-14(7-9-16)20-23-25-26-24-20/h3-9,12H,1-2,10-11,13H2,(H,22,27)(H,23,24,25,26) OJTOQKULIZCVRF-UHFFFAOYSA-N
CVL amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
CVL phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CVL C2 S1 1
CVL C3 S1 1
CVL C4 S1 1
CVL C5 S1 1
CVL C6 S1 1
CVL N1 S1 1
CVL N2 S1 1
CVL C10 S1 1
CVL O2 S1 1
CVL C11 S1 1
CVL C14 S1 1
CVL C15 S1 1
CVL O3 S1 1
CVL C16 S1 1
CVL C17 S1 1
CVL C18 S1 1
CVL C19 S1 1
CVL O4 S1 1
CVL C20 S1 1
CVL C21 S1 1
CVL C22 S1 1
CVL C23 S1 1
CVL C24 S1 1
CVL N3 S1 1
CVL N4 S1 1
CVL N5 S1 1
CVL N6 S1 1
CVL C25 S1 1
CVL C26 S1 1
CVL N2 F1 1
CVL C10 F1 1
CVL O2 F1 1
CVL C11 F1 1
CVL C2 F2 1
CVL C15 F2 1
CVL C14 F2 1
CVL C5 F2 1
CVL C4 F2 1
CVL C3 F2 1
CVL C20 F2 2
CVL C26 F2 2
CVL C25 F2 2
CVL C23 F2 2
CVL C22 F2 2
CVL C21 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id CVL
_pdbe_chem_comp_rdkit_properties.exactmw 492.249
_pdbe_chem_comp_rdkit_properties.amw 492.580
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 68
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.423
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 255.202
_pdbe_chem_comp_rdkit_properties.tpsa 114.820
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.272
_pdbe_chem_comp_rdkit_properties.CrippenMR 131.714
_pdbe_chem_comp_rdkit_properties.chi0v 17.316
_pdbe_chem_comp_rdkit_properties.chi1v 9.097
_pdbe_chem_comp_rdkit_properties.chi2v 3.980
_pdbe_chem_comp_rdkit_properties.chi3v 3.980
_pdbe_chem_comp_rdkit_properties.chi4v 2.422
_pdbe_chem_comp_rdkit_properties.chi0n 49.316
_pdbe_chem_comp_rdkit_properties.chi1n 25.044
_pdbe_chem_comp_rdkit_properties.chi2n 3.980
_pdbe_chem_comp_rdkit_properties.chi3n 3.980
_pdbe_chem_comp_rdkit_properties.chi4n 2.422
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.950
_pdbe_chem_comp_rdkit_properties.kappa1 6.873
_pdbe_chem_comp_rdkit_properties.kappa2 10.759
_pdbe_chem_comp_rdkit_properties.kappa3 5.319
_pdbe_chem_comp_rdkit_properties.Phi 2.054
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CVL UniChem ChEMBL CHEMBL2171456
CVL UniChem PDBe CVL
CVL UniChem ZINC ZINC000095556359
CVL UniChem 'PubChem TPHARMA' 163456184
CVL UniChem PubChem 71460705
CVL UniChem Nikkaji J3.498.905B
CVL UniChem BindingDb 50397086
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CVL C1 2.611 3.549 1.576 ETKDGv3 1
CVL O1 1.867 2.335 1.559 ETKDGv3 2
CVL C2 0.492 2.259 1.290 ETKDGv3 3
CVL C3 -0.314 3.471 0.997 ETKDGv3 4
CVL C4 -1.620 3.368 0.738 ETKDGv3 5
CVL C5 -2.298 2.045 0.743 ETKDGv3 6
CVL C6 -3.762 1.983 0.449 ETKDGv3 7
CVL N1 -4.425 3.076 0.206 ETKDGv3 8
CVL N2 -5.766 2.808 -0.053 ETKDGv3 9
CVL C7 -6.728 3.829 -0.476 ETKDGv3 10
CVL C8 -7.128 3.618 -1.938 ETKDGv3 11
CVL C9 -7.951 3.835 0.445 ETKDGv3 12
CVL C10 -5.945 1.407 0.014 ETKDGv3 13
CVL O2 -7.040 0.821 -0.204 ETKDGv3 14
CVL C11 -4.655 0.738 0.364 ETKDGv3 15
CVL C12 -4.810 0.018 1.716 ETKDGv3 16
CVL C13 -4.248 -0.213 -0.776 ETKDGv3 17
CVL C14 -1.561 0.952 1.016 ETKDGv3 18
CVL C15 -0.101 1.055 1.294 ETKDGv3 19
CVL O3 0.689 -0.074 1.568 ETKDGv3 20
CVL C16 0.269 -1.433 1.433 ETKDGv3 21
CVL C17 0.142 -1.842 -0.043 ETKDGv3 22
CVL C18 1.400 -1.541 -0.876 ETKDGv3 23
CVL C19 2.610 -2.371 -0.446 ETKDGv3 24
CVL O4 3.681 -2.149 -1.360 ETKDGv3 25
CVL C20 4.948 -2.746 -1.268 ETKDGv3 26
CVL C21 5.954 -2.407 -2.296 ETKDGv3 27
CVL C22 7.178 -2.947 -2.257 ETKDGv3 28
CVL C23 7.547 -3.898 -1.177 ETKDGv3 29
CVL C24 8.902 -4.496 -1.133 ETKDGv3 30
CVL N3 9.945 -4.245 -2.062 ETKDGv3 31
CVL N4 10.999 -5.029 -1.595 ETKDGv3 32
CVL N5 10.630 -5.648 -0.548 ETKDGv3 33
CVL N6 9.302 -5.330 -0.229 ETKDGv3 34
CVL C25 6.629 -4.205 -0.241 ETKDGv3 35
CVL C26 5.278 -3.608 -0.287 ETKDGv3 36
CVL H1 3.670 3.321 1.813 ETKDGv3 37
CVL H2 2.210 4.231 2.355 ETKDGv3 38
CVL H3 2.566 4.037 0.579 ETKDGv3 39
CVL H4 0.146 4.450 0.987 ETKDGv3 40
CVL H5 -2.179 4.271 0.525 ETKDGv3 41
CVL H8 -6.242 4.827 -0.396 ETKDGv3 42
CVL H9 -7.788 4.445 -2.275 ETKDGv3 43
CVL H10 -7.667 2.655 -2.067 ETKDGv3 44
CVL H11 -6.221 3.609 -2.579 ETKDGv3 45
CVL H12 -8.618 4.685 0.184 ETKDGv3 46
CVL H13 -8.528 2.891 0.351 ETKDGv3 47
CVL H14 -7.627 3.955 1.501 ETKDGv3 48
CVL H15 -5.049 0.748 2.520 ETKDGv3 49
CVL H16 -5.635 -0.724 1.661 ETKDGv3 50
CVL H17 -3.894 -0.531 2.004 ETKDGv3 51
CVL H18 -4.102 0.353 -1.721 ETKDGv3 52
CVL H19 -3.313 -0.758 -0.549 ETKDGv3 53
CVL H20 -5.042 -0.973 -0.942 ETKDGv3 54
CVL H21 -2.014 -0.017 1.045 ETKDGv3 55
CVL H22 1.019 -2.083 1.930 ETKDGv3 56
CVL H23 -0.689 -1.600 1.967 ETKDGv3 57
CVL H24 -0.714 -1.302 -0.500 ETKDGv3 58
CVL H25 -0.091 -2.927 -0.100 ETKDGv3 59
CVL H26 1.173 -1.773 -1.940 ETKDGv3 60
CVL H27 1.649 -0.459 -0.818 ETKDGv3 61
CVL H28 2.931 -2.066 0.573 ETKDGv3 62
CVL H29 2.341 -3.450 -0.447 ETKDGv3 63
CVL H30 5.697 -1.715 -3.088 ETKDGv3 64
CVL H31 7.891 -2.678 -3.024 ETKDGv3 65
CVL H32 9.966 -3.631 -2.906 ETKDGv3 66
CVL H33 6.860 -4.894 0.562 ETKDGv3 67
CVL H34 4.571 -3.882 0.484 ETKDGv3 68
#