data_CWF
#
_chem_comp.id CWF
_chem_comp.name "(8S)-8-azanylnonanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H19 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-05-24
_chem_comp.pdbx_modified_date 2020-02-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 173.253
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CWF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6K36
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CWF OAC O1 O 0 1 N N N N N N -12.069 -2.726 11.639 4.335 -1.192 -0.416 OAC CWF 1
CWF CAK C1 C 0 1 N N N N N N -13.240 -2.249 11.647 4.360 -0.040 -0.051 CAK CWF 2
CWF OAD O2 O 0 1 N N N N N N -14.154 -2.498 12.480 5.536 0.590 0.103 OAD CWF 3
CWF CAI C2 C 0 1 N N N N N N -13.618 -1.198 10.638 3.072 0.691 0.225 CAI CWF 4
CWF CAG C3 C 0 1 N N N N N N -13.844 -1.780 9.259 1.889 -0.246 -0.032 CAG CWF 5
CWF CAE C4 C 0 1 N N N N N N -14.733 -0.710 8.633 0.581 0.496 0.248 CAE CWF 6
CWF CAF C5 C 0 1 N N N N N N -15.702 -1.236 7.581 -0.602 -0.440 -0.009 CAF CWF 7
CWF CAH C6 C 0 1 N N N N N N -15.321 -0.755 6.157 -1.910 0.302 0.272 CAH CWF 8
CWF CAJ C7 C 0 1 N N N N N N -16.569 -0.407 5.352 -3.092 -0.634 0.014 CAJ CWF 9
CWF CAL C8 C 0 1 N N S N N N -17.291 -1.706 4.872 -4.401 0.108 0.295 CAL CWF 10
CWF CAA C9 C 0 1 N N N N N N -16.372 -2.518 3.950 -5.576 -0.862 0.159 CAA CWF 11
CWF NAB N1 N 0 1 N N N N N N -18.633 -1.442 4.272 -4.557 1.206 -0.669 NAB CWF 12
CWF H1 H1 H 0 1 N N N N N N -13.834 -3.116 13.127 6.335 0.081 -0.090 H1 CWF 13
CWF H2 H2 H 0 1 N N N N N N -12.808 -0.456 10.580 3.056 1.019 1.264 H2 CWF 14
CWF H3 H3 H 0 1 N N N N N N -14.544 -0.706 10.970 2.998 1.558 -0.431 H3 CWF 15
CWF H4 H4 H 0 1 N N N N N N -14.357 -2.752 9.310 1.905 -0.574 -1.071 H4 CWF 16
CWF H5 H5 H 0 1 N N N N N N -12.899 -1.893 8.708 1.963 -1.113 0.624 H5 CWF 17
CWF H6 H6 H 0 1 N N N N N N -14.085 0.042 8.159 0.565 0.825 1.288 H6 CWF 18
CWF H7 H7 H 0 1 N N N N N N -15.319 -0.237 9.435 0.507 1.364 -0.408 H7 CWF 19
CWF H8 H8 H 0 1 N N N N N N -16.715 -0.878 7.819 -0.586 -0.768 -1.048 H8 CWF 20
CWF H9 H9 H 0 1 N N N N N N -15.687 -2.336 7.601 -0.528 -1.307 0.647 H9 CWF 21
CWF H10 H10 H 0 1 N N N N N N -14.770 -1.555 5.641 -1.926 0.631 1.311 H10 CWF 22
CWF H11 H11 H 0 1 N N N N N N -14.682 0.137 6.236 -1.984 1.169 -0.384 H11 CWF 23
CWF H12 H12 H 0 1 N N N N N N -16.279 0.191 4.475 -3.077 -0.962 -1.025 H12 CWF 24
CWF H13 H13 H 0 1 N N N N N N -17.256 0.177 5.983 -3.019 -1.501 0.670 H13 CWF 25
CWF H14 H14 H 0 1 N N N N N N -17.454 -2.318 5.771 -4.379 0.513 1.307 H14 CWF 26
CWF H15 H15 H 0 1 N N N N N N -15.403 -2.679 4.446 -6.509 -0.333 0.359 H15 CWF 27
CWF H16 H16 H 0 1 N N N N N N -16.838 -3.490 3.732 -5.598 -1.267 -0.853 H16 CWF 28
CWF H17 H17 H 0 1 N N N N N N -16.216 -1.967 3.011 -5.460 -1.676 0.874 H17 CWF 29
CWF H18 H18 H 0 1 N N N N N N -19.187 -0.912 4.914 -4.516 0.863 -1.617 H18 CWF 30
CWF H19 H19 H 0 1 N N N N N N -18.523 -0.927 3.422 -5.415 1.712 -0.504 H19 CWF 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CWF CAA CAL SING N N 1
CWF NAB CAL SING N N 2
CWF CAL CAJ SING N N 3
CWF CAJ CAH SING N N 4
CWF CAH CAF SING N N 5
CWF CAF CAE SING N N 6
CWF CAE CAG SING N N 7
CWF CAG CAI SING N N 8
CWF CAI CAK SING N N 9
CWF OAC CAK DOUB N N 10
CWF CAK OAD SING N N 11
CWF OAD H1 SING N N 12
CWF CAI H2 SING N N 13
CWF CAI H3 SING N N 14
CWF CAG H4 SING N N 15
CWF CAG H5 SING N N 16
CWF CAE H6 SING N N 17
CWF CAE H7 SING N N 18
CWF CAF H8 SING N N 19
CWF CAF H9 SING N N 20
CWF CAH H10 SING N N 21
CWF CAH H11 SING N N 22
CWF CAJ H12 SING N N 23
CWF CAJ H13 SING N N 24
CWF CAL H14 SING N N 25
CWF CAA H15 SING N N 26
CWF CAA H16 SING N N 27
CWF CAA H17 SING N N 28
CWF NAB H18 SING N N 29
CWF NAB H19 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CWF InChI InChI 1.03 InChI=1S/C9H19NO2/c1-8(10)6-4-2-3-5-7-9(11)12/h8H,2-7,10H2,1H3,(H,11,12)/t8-/m0/s1
CWF InChIKey InChI 1.03 VXBHEKXWXPQBQM-QMMMGPOBSA-N
CWF SMILES_CANONICAL CACTVS 3.385 C[C@H](N)CCCCCCC(O)=O
CWF SMILES CACTVS 3.385 C[CH](N)CCCCCCC(O)=O
CWF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@@H](CCCCCCC(=O)O)N
CWF SMILES "OpenEye OEToolkits" 2.0.7 CC(CCCCCCC(=O)O)N
#
_pdbx_chem_comp_identifier.comp_id CWF
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(8~{S})-8-azanylnonanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CWF 'Create component' 2019-05-24 PDBJ
CWF 'Initial release' 2020-02-26 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CWF OAC O 15.497 -0.375 1
CWF CAK C 14.198 0.375 2
CWF OAD O 14.198 1.875 3
CWF CAI C 12.899 -0.375 4
CWF CAG C 11.600 0.375 5
CWF CAE C 10.301 -0.375 6
CWF CAF C 9.002 0.375 7
CWF CAH C 7.702 -0.375 8
CWF CAJ C 6.404 0.375 9
CWF CAL C 5.104 -0.375 10
CWF CAA C 3.805 0.375 11
CWF NAB N 5.104 -1.875 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CWF CAL CAA SINGLE BEGINWEDGE 1
CWF NAB CAL SINGLE NONE 2
CWF CAL CAJ SINGLE NONE 3
CWF CAJ CAH SINGLE NONE 4
CWF CAH CAF SINGLE NONE 5
CWF CAF CAE SINGLE NONE 6
CWF CAE CAG SINGLE NONE 7
CWF CAG CAI SINGLE NONE 8
CWF CAI CAK SINGLE NONE 9
CWF OAC CAK DOUBLE NONE 10
CWF CAK OAD SINGLE NONE 11
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id CWF
_pdbe_chem_comp_rdkit_properties.exactmw 173.142
_pdbe_chem_comp_rdkit_properties.amw 173.256
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 31
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.889
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 100.852
_pdbe_chem_comp_rdkit_properties.tpsa 63.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.759
_pdbe_chem_comp_rdkit_properties.CrippenMR 48.987
_pdbe_chem_comp_rdkit_properties.chi0v 5.764
_pdbe_chem_comp_rdkit_properties.chi1v 2.632
_pdbe_chem_comp_rdkit_properties.chi2v 0.533
_pdbe_chem_comp_rdkit_properties.chi3v 0.533
_pdbe_chem_comp_rdkit_properties.chi4v 0.235
_pdbe_chem_comp_rdkit_properties.chi0n 24.764
_pdbe_chem_comp_rdkit_properties.chi1n 11.935
_pdbe_chem_comp_rdkit_properties.chi2n 0.533
_pdbe_chem_comp_rdkit_properties.chi3n 0.533
_pdbe_chem_comp_rdkit_properties.chi4n 0.235
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.570
_pdbe_chem_comp_rdkit_properties.kappa1 1.436
_pdbe_chem_comp_rdkit_properties.kappa2 7.099
_pdbe_chem_comp_rdkit_properties.kappa3 9.430
_pdbe_chem_comp_rdkit_properties.Phi 0.849
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CWF UniChem PDBe CWF
CWF UniChem PubChem 96955430
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CWF OAC 4.046 -0.922 -2.463 ETKDGv3 1
CWF CAK 4.090 -0.432 -1.303 ETKDGv3 2
CWF OAD 4.746 -1.113 -0.283 ETKDGv3 3
CWF CAI 3.408 0.871 -1.013 ETKDGv3 4
CWF CAG 1.890 0.700 -0.865 ETKDGv3 5
CWF CAE 1.515 -0.069 0.414 ETKDGv3 6
CWF CAF -0.000 -0.294 0.541 ETKDGv3 7
CWF CAH -0.777 1.015 0.769 ETKDGv3 8
CWF CAJ -2.179 0.806 1.377 ETKDGv3 9
CWF CAL -3.245 0.136 0.472 ETKDGv3 10
CWF CAA -3.211 -1.400 0.531 ETKDGv3 11
CWF NAB -3.171 0.624 -0.908 ETKDGv3 12
CWF H1 5.200 -2.001 -0.461 ETKDGv3 13
CWF H2 3.612 1.573 -1.850 ETKDGv3 14
CWF H3 3.833 1.321 -0.090 ETKDGv3 15
CWF H4 1.437 1.713 -0.830 ETKDGv3 16
CWF H5 1.484 0.176 -1.758 ETKDGv3 17
CWF H6 1.891 0.475 1.308 ETKDGv3 18
CWF H7 2.005 -1.066 0.398 ETKDGv3 19
CWF H8 -0.173 -0.981 1.398 ETKDGv3 20
CWF H9 -0.362 -0.791 -0.382 ETKDGv3 21
CWF H10 -0.853 1.586 -0.180 ETKDGv3 22
CWF H11 -0.206 1.650 1.481 ETKDGv3 23
CWF H12 -2.563 1.816 1.644 ETKDGv3 24
CWF H13 -2.091 0.252 2.337 ETKDGv3 25
CWF H14 -4.234 0.436 0.886 ETKDGv3 26
CWF H15 -3.257 -1.746 1.586 ETKDGv3 27
CWF H16 -2.303 -1.815 0.056 ETKDGv3 28
CWF H17 -4.094 -1.812 -0.003 ETKDGv3 29
CWF H18 -2.386 0.147 -1.408 ETKDGv3 30
CWF H19 -4.051 0.350 -1.403 ETKDGv3 31
#