data_CXL
#
_chem_comp.id CXL
_chem_comp.name CYCLOHEXANOL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H12 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 100.159
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CXL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1HDX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CXL C1 C1 C 0 1 N N N N N N -1.005 0.566 -63.839 -0.027 -0.327 0.976 C1 CXL 1
CXL C2 C2 C 0 1 N N N N N N -1.799 1.644 -63.091 -1.263 0.207 0.250 C2 CXL 2
CXL C3 C3 C 0 1 N N N N N N -3.270 1.229 -62.851 -1.232 -0.243 -1.210 C3 CXL 3
CXL C4 C4 C 0 1 N N N N N N -4.018 0.813 -64.143 0.030 0.298 -1.884 C4 CXL 4
CXL C5 C5 C 0 1 N N N N N N -3.197 -0.231 -64.950 1.265 -0.237 -1.159 C5 CXL 5
CXL C6 C6 C 0 1 N N N N N N -1.742 0.263 -65.197 1.234 0.214 0.302 C6 CXL 6
CXL O O O 0 1 N N N N N N 0.325 1.077 -64.121 -0.056 0.094 2.341 O CXL 7
CXL H1 H1 H 0 1 N N N N N N -0.929 -0.362 -63.226 -0.023 -1.416 0.932 H1 CXL 8
CXL H21 1H2 H 0 1 N N N N N N -1.297 1.922 -62.134 -2.162 -0.178 0.731 H21 CXL 9
CXL H22 2H2 H 0 1 N N N N N N -1.738 2.625 -63.615 -1.267 1.296 0.294 H22 CXL 10
CXL H31 1H3 H 0 1 N N N N N N -3.331 0.422 -62.083 -1.228 -1.332 -1.254 H31 CXL 11
CXL H32 2H3 H 0 1 N N N N N N -3.824 2.036 -62.317 -2.112 0.137 -1.727 H32 CXL 12
CXL H41 1H4 H 0 1 N N N N N N -5.047 0.445 -63.922 0.052 -0.023 -2.926 H41 CXL 13
CXL H42 2H4 H 0 1 N N N N N N -4.284 1.697 -64.766 0.026 1.387 -1.841 H42 CXL 14
CXL H51 1H5 H 0 1 N N N N N N -3.211 -1.231 -64.458 1.269 -1.326 -1.203 H51 CXL 15
CXL H52 2H5 H 0 1 N N N N N N -3.705 -0.501 -65.904 2.165 0.148 -1.639 H52 CXL 16
CXL H61 1H6 H 0 1 N N N N N N -1.718 1.143 -65.881 1.231 1.303 0.346 H61 CXL 17
CXL H62 2H6 H 0 1 N N N N N N -1.165 -0.456 -65.824 2.115 -0.167 0.819 H62 CXL 18
CXL HO HO H 0 1 N N N N N N 0.816 0.409 -64.584 0.737 -0.263 2.761 HO CXL 19
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CXL C1 C2 SING N N 1
CXL C1 C6 SING N N 2
CXL C1 O SING N N 3
CXL C1 H1 SING N N 4
CXL C2 C3 SING N N 5
CXL C2 H21 SING N N 6
CXL C2 H22 SING N N 7
CXL C3 C4 SING N N 8
CXL C3 H31 SING N N 9
CXL C3 H32 SING N N 10
CXL C4 C5 SING N N 11
CXL C4 H41 SING N N 12
CXL C4 H42 SING N N 13
CXL C5 C6 SING N N 14
CXL C5 H51 SING N N 15
CXL C5 H52 SING N N 16
CXL C6 H61 SING N N 17
CXL C6 H62 SING N N 18
CXL O HO SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CXL SMILES ACDLabs 10.04 OC1CCCCC1
CXL SMILES_CANONICAL CACTVS 3.341 OC1CCCCC1
CXL SMILES CACTVS 3.341 OC1CCCCC1
CXL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1CCC(CC1)O
CXL SMILES "OpenEye OEToolkits" 1.5.0 C1CCC(CC1)O
CXL InChI InChI 1.03 InChI=1S/C6H12O/c7-6-4-2-1-3-5-6/h6-7H,1-5H2
CXL InChIKey InChI 1.03 HPXRVTGHNJAIIH-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CXL "SYSTEMATIC NAME" ACDLabs 10.04 cyclohexanol
CXL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 cyclohexanol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CXL 'Create component' 1999-07-08 RCSB
CXL 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id CXL
_pdbe_chem_comp_drugbank_details.drugbank_id DB03703
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Cyclohexanol
_pdbe_chem_comp_drugbank_details.description
'Monohydroxy derivatives of cyclohexanes that contain the general formula R-C6H11O. They have a camphorlike odor and are used in making soaps, insecticides, germicides, dry cleaning, and plasticizers. [PubChem]'
_pdbe_chem_comp_drugbank_details.cas_number 108-93-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CXL
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03703
_pdbe_chem_comp_drugbank_classification.parent Cyclohexanols
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as cyclohexanols. These are compounds containing an alcohol group attached to a cyclohexane ring.'
#
_pdbe_chem_comp_drugbank_targets.comp_id CXL
_pdbe_chem_comp_drugbank_targets.drugbank_id DB03703
_pdbe_chem_comp_drugbank_targets.name 'Alcohol dehydrogenase 1B'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P00325
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CXL C1 C 4.299 0.517 1
CXL C2 C 3.000 -0.233 2
CXL C3 C 3.000 -1.732 3
CXL C4 C 4.299 -2.482 4
CXL C5 C 5.598 -1.732 5
CXL C6 C 5.598 -0.233 6
CXL O O 4.299 2.018 7
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CXL C1 C2 SINGLE NONE 1
CXL C1 C6 SINGLE NONE 2
CXL C1 O SINGLE NONE 3
CXL C2 C3 SINGLE NONE 4
CXL C3 C4 SINGLE NONE 5
CXL C4 C5 SINGLE NONE 6
CXL C5 C6 SINGLE NONE 7
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CXL MurckoScaffold S1 scaffold C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
CXL cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CXL C1 S1 1
CXL C2 S1 1
CXL C3 S1 1
CXL C4 S1 1
CXL C5 S1 1
CXL C6 S1 1
CXL C1 F1 1
CXL C2 F1 1
CXL C3 F1 1
CXL C4 F1 1
CXL C5 F1 1
CXL C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CXL
_pdbe_chem_comp_rdkit_properties.exactmw 100.089
_pdbe_chem_comp_rdkit_properties.amw 100.161
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 7
_pdbe_chem_comp_rdkit_properties.NumAtoms 19
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 61.299
_pdbe_chem_comp_rdkit_properties.tpsa 20.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.311
_pdbe_chem_comp_rdkit_properties.CrippenMR 29.092
_pdbe_chem_comp_rdkit_properties.chi0v 3.408
_pdbe_chem_comp_rdkit_properties.chi1v 1.704
_pdbe_chem_comp_rdkit_properties.chi2v 0.477
_pdbe_chem_comp_rdkit_properties.chi3v 0.477
_pdbe_chem_comp_rdkit_properties.chi4v 0.239
_pdbe_chem_comp_rdkit_properties.chi0n 15.408
_pdbe_chem_comp_rdkit_properties.chi1n 7.612
_pdbe_chem_comp_rdkit_properties.chi2n 0.477
_pdbe_chem_comp_rdkit_properties.chi3n 0.477
_pdbe_chem_comp_rdkit_properties.chi4n 0.239
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.040
_pdbe_chem_comp_rdkit_properties.kappa1 0.688
_pdbe_chem_comp_rdkit_properties.kappa2 2.314
_pdbe_chem_comp_rdkit_properties.kappa3 1.475
_pdbe_chem_comp_rdkit_properties.Phi 0.227
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CXL UniChem ChEMBL CHEMBL32010
CXL UniChem DrugBank DB03703
CXL UniChem PDBe CXL
CXL UniChem 'KEGG LIGAND' C00854
CXL UniChem ChEBI 18099
CXL UniChem ZINC ZINC000001532765
CXL UniChem fdasrs 8E7S519M3P
CXL UniChem SureChEMBL SCHEMBL5545
CXL UniChem NMRShiftDB 60019195
CXL UniChem ACTor 108-93-0
CXL UniChem BRENDA 104529
CXL UniChem BRENDA 108812
CXL UniChem BRENDA 873
CXL UniChem Rhea 18099
CXL UniChem ChemicalBook CB7852772
CXL UniChem rxnorm CYCLOHEXANOL
CXL UniChem 'Probes And Drugs' PD006688
CXL UniChem 'EPA CompTox Dashboard' DTXSID4021894
CXL UniChem eMolecules 478031
CXL UniChem 'PubChem TPHARMA' 15140941
CXL UniChem PubChem 7966
CXL UniChem Mcule MCULE-8217921343
CXL UniChem Nikkaji J2.871A
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CXL C1 1.299 -0.083 -0.002 ETKDGv3 1
CXL C2 0.440 -1.357 0.023 ETKDGv3 2
CXL C3 -0.902 -1.134 -0.687 ETKDGv3 3
CXL C4 -1.662 0.044 -0.067 ETKDGv3 4
CXL C5 -0.810 1.319 -0.087 ETKDGv3 5
CXL C6 0.532 1.096 0.622 ETKDGv3 6
CXL O 2.483 -0.315 0.713 ETKDGv3 7
CXL H1 1.544 0.157 -1.064 ETKDGv3 8
CXL H21 0.256 -1.668 1.075 ETKDGv3 9
CXL H22 0.988 -2.181 -0.486 ETKDGv3 10
CXL H31 -1.519 -2.054 -0.602 ETKDGv3 11
CXL H32 -0.725 -0.939 -1.767 ETKDGv3 12
CXL H41 -2.598 0.219 -0.640 ETKDGv3 13
CXL H42 -1.942 -0.202 0.981 ETKDGv3 14
CXL H51 -1.363 2.137 0.423 ETKDGv3 15
CXL H52 -0.630 1.632 -1.139 ETKDGv3 16
CXL H61 1.143 2.021 0.539 ETKDGv3 17
CXL H62 0.353 0.900 1.703 ETKDGv3 18
CXL HO 3.116 0.408 0.461 ETKDGv3 19
#