data_CZ2
#
_chem_comp.id CZ2
_chem_comp.name 'S-(DIHYDROXYARSINO)CYSTEINE'
_chem_comp.type 'L-PEPTIDE LINKING'
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C3 H8 As N O4 S'
_chem_comp.mon_nstd_parent_comp_id CYS
_chem_comp.pdbx_synonyms 'THIARSA DIHYDROXY CYSTEINE'
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-03-26
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 229.087
_chem_comp.one_letter_code C
_chem_comp.three_letter_code CZ2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1SJZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CZ2 N N N 0 1 N N N Y Y N 22.983 55.468 64.809 1.088 -0.753 -1.094 N CZ2 1
CZ2 CA CA C 0 1 N N R Y N N 21.704 54.787 64.582 1.908 0.309 -0.497 CA CZ2 2
CZ2 CB CB C 0 1 N N N N N N 21.104 55.248 63.279 1.186 0.886 0.723 CB CZ2 3
CZ2 SG SG S 0 1 N N N N N N 19.918 54.086 62.575 -0.412 1.573 0.209 SG CZ2 4
CZ2 C C C 0 1 N N N Y N Y 21.929 53.280 64.649 3.237 -0.262 -0.070 C CZ2 5
CZ2 O O O 0 1 N N N Y N Y 22.732 52.773 63.872 3.357 -1.452 0.097 O CZ2 6
CZ2 AS AS AS 0 0 N N N N N N 18.011 54.560 63.990 -1.663 -0.255 -0.124 AS CZ2 7
CZ2 O1 O1 O 0 1 N N N N N N 16.803 53.390 63.255 -1.776 -1.214 1.442 O1 CZ2 8
CZ2 O2 O2 O 0 1 N N N N N N 17.639 56.295 63.570 -3.351 0.246 -0.659 O2 CZ2 9
CZ2 OXT OXT O 0 1 N Y N Y N Y ? ? ? 4.286 0.553 0.124 OXT CZ2 10
CZ2 H2 H2 H 0 1 N Y N Y Y N 23.439 55.623 63.933 1.513 -1.106 -1.939 H2 CZ2 11
CZ2 H H H 0 1 N N N Y Y N 22.818 56.346 65.258 0.923 -1.497 -0.434 H CZ2 12
CZ2 HA HCA H 0 1 N N N Y N N 20.974 55.043 65.364 2.071 1.099 -1.230 HCA CZ2 13
CZ2 HB2 HB2 H 0 1 N N N N N N 20.583 56.199 63.461 1.024 0.097 1.456 HB2 CZ2 14
CZ2 HB3 HB3 H 0 1 N N N N N N 21.930 55.344 62.559 1.795 1.674 1.166 HB3 CZ2 15
CZ2 HO1 HO1 H 0 1 N N N N N N 16.129 53.188 63.893 -2.304 -2.022 1.372 HO1 CZ2 16
CZ2 HO2 HO2 H 0 1 N N N N N N 17.574 56.807 64.367 -3.948 -0.497 -0.822 HO2 CZ2 17
CZ2 HXT HXT H 0 1 N Y N Y N Y 0.140 -0.939 0.042 5.117 0.140 0.397 HXT CZ2 18
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CZ2 N CA SING N N 1
CZ2 N H2 SING N N 2
CZ2 N H SING N N 3
CZ2 CA CB SING N N 4
CZ2 CA C SING N N 5
CZ2 CA HA SING N N 6
CZ2 CB SG SING N N 7
CZ2 CB HB2 SING N N 8
CZ2 CB HB3 SING N N 9
CZ2 SG AS SING N N 10
CZ2 C O DOUB N N 11
CZ2 C OXT SING N N 12
CZ2 AS O1 SING N N 13
CZ2 AS O2 SING N N 14
CZ2 O1 HO1 SING N N 15
CZ2 O2 HO2 SING N N 16
CZ2 OXT HXT SING N N 17
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CZ2 SMILES ACDLabs 10.04 'O=C(O)C(N)CS[As](O)O'
CZ2 SMILES_CANONICAL CACTVS 3.341 'N[C@@H](CS[As](O)O)C(O)=O'
CZ2 SMILES CACTVS 3.341 'N[CH](CS[As](O)O)C(O)=O'
CZ2 SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'C([C@@H](C(=O)O)N)S[As](O)O'
CZ2 SMILES 'OpenEye OEToolkits' 1.5.0 'C(C(C(=O)O)N)S[As](O)O'
CZ2 InChI InChI 1.03 'InChI=1S/C3H8AsNO4S/c5-2(3(6)7)1-10-4(8)9/h2,8-9H,1,5H2,(H,6,7)/t2-/m0/s1'
CZ2 InChIKey InChI 1.03 FZFDBYKEUGDOOP-REOHCLBHSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CZ2 'SYSTEMATIC NAME' ACDLabs 10.04 'S-(dihydroxyarsanyl)-L-cysteine'
CZ2 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '(2R)-2-amino-3-dihydroxyarsanylsulfanyl-propanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CZ2 'Create component' 2004-03-26 RCSB
CZ2 'Modify descriptor' 2011-06-04 RCSB
CZ2 'Modify synonyms' 2020-06-05 PDBE
CZ2 'Modify backbone' 2023-11-03 PDBE
CZ2 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id CZ2
_pdbx_chem_comp_synonyms.name 'THIARSA DIHYDROXY CYSTEINE'
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id CZ2
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Non-standard residue'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 1SJZ
#
_pdbe_chem_comp_drugbank_details.comp_id CZ2
_pdbe_chem_comp_drugbank_details.drugbank_id DB03289
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Thiarsa Dihydroxy Cysteine'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id CZ2
_pdbe_chem_comp_synonyms.name 'THIARSA DIHYDROXY CYSTEINE'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CZ2
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03289
_pdbe_chem_comp_drugbank_classification.parent L-cysteine-S-conjugates
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as l-cysteine-s-conjugates. These are compounds containing L-cysteine where the thio-group is conjugated.'
#
_pdbe_chem_comp_drugbank_targets.comp_id CZ2
_pdbe_chem_comp_drugbank_targets.drugbank_id DB03289
_pdbe_chem_comp_drugbank_targets.name 'Arsenate reductase'
_pdbe_chem_comp_drugbank_targets.organism 'Escherichia coli'
_pdbe_chem_comp_drugbank_targets.uniprot_id P08692
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CZ2 N N 4.299 2.340 1
CZ2 CA C 5.598 1.590 2
CZ2 CB C 5.598 0.090 3
CZ2 SG S 4.299 -0.660 4
CZ2 C C 6.897 2.340 5
CZ2 O O 8.196 1.590 6
CZ2 AS As 4.299 -2.160 7
CZ2 O1 O 3.000 -2.910 8
CZ2 O2 O 5.598 -2.910 9
CZ2 OXT O 6.897 3.840 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CZ2 CA N SINGLE BEGINDASH 1
CZ2 CA CB SINGLE NONE 2
CZ2 CA C SINGLE NONE 3
CZ2 CB SG SINGLE NONE 4
CZ2 SG AS SINGLE NONE 5
CZ2 C O DOUBLE NONE 6
CZ2 C OXT SINGLE NONE 7
CZ2 AS O1 SINGLE NONE 8
CZ2 AS O2 SINGLE NONE 9
#
_pdbe_chem_comp_substructure.comp_id CZ2
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CZ2 O F1 1
CZ2 C F1 1
CZ2 CA F1 1
CZ2 N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CZ2
_pdbe_chem_comp_rdkit_properties.exactmw 228.939
_pdbe_chem_comp_rdkit_properties.amw 229.089
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 18
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 77.792
_pdbe_chem_comp_rdkit_properties.tpsa 103.780
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.899
_pdbe_chem_comp_rdkit_properties.CrippenMR 38.261
_pdbe_chem_comp_rdkit_properties.chi0v 7.129
_pdbe_chem_comp_rdkit_properties.chi1v 6.488
_pdbe_chem_comp_rdkit_properties.chi2v 2.357
_pdbe_chem_comp_rdkit_properties.chi3v 2.357
_pdbe_chem_comp_rdkit_properties.chi4v 1.380
_pdbe_chem_comp_rdkit_properties.chi0n 12.436
_pdbe_chem_comp_rdkit_properties.chi1n 5.503
_pdbe_chem_comp_rdkit_properties.chi2n 0.410
_pdbe_chem_comp_rdkit_properties.chi3n 0.410
_pdbe_chem_comp_rdkit_properties.chi4n 0.122
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.258
_pdbe_chem_comp_rdkit_properties.kappa1 2.952
_pdbe_chem_comp_rdkit_properties.kappa2 4.982
_pdbe_chem_comp_rdkit_properties.kappa3 5.076
_pdbe_chem_comp_rdkit_properties.Phi 1.471
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CZ2 UniChem DrugBank DB03289
CZ2 UniChem PDBe CZ2
CZ2 UniChem PubChem 49866861
CZ2 UniChem 'Probes And Drugs' PD059812
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CZ2 N -1.178 -1.372 -0.928 ETKDGv3 1
CZ2 CA -0.602 -0.281 -0.138 ETKDGv3 2
CZ2 CB 0.035 0.770 -1.060 ETKDGv3 3
CZ2 SG 1.398 0.067 -2.058 ETKDGv3 4
CZ2 C -1.652 0.360 0.729 ETKDGv3 5
CZ2 O -1.490 0.415 1.978 ETKDGv3 6
CZ2 AS 3.080 0.031 -0.502 ETKDGv3 7
CZ2 O1 2.213 0.867 0.886 ETKDGv3 8
CZ2 O2 2.632 -1.646 0.102 ETKDGv3 9
CZ2 OXT -2.793 0.910 0.154 ETKDGv3 10
CZ2 H2 -1.562 -2.092 -0.274 ETKDGv3 11
CZ2 H -1.976 -1.010 -1.499 ETKDGv3 12
CZ2 HA 0.186 -0.706 0.518 ETKDGv3 13
CZ2 HB2 0.386 1.654 -0.491 ETKDGv3 14
CZ2 HB3 -0.735 1.143 -1.771 ETKDGv3 15
CZ2 HO1 2.538 1.802 0.855 ETKDGv3 16
CZ2 HO2 3.024 -2.264 -0.564 ETKDGv3 17
CZ2 HXT -3.504 1.351 0.726 ETKDGv3 18
#