data_D42
#
_chem_comp.id D42
_chem_comp.name
1-(3-(2,4-DIMETHYLTHIAZOL-5-YL)-4-OXO-2,4-DIHYDROINDENO[1,2-C]PYRAZOL-5-YL)-3-(4-METHYLPIPERAZIN-1-YL)UREA
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H23 N7 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms DPH-042562
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-09-28
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 437.518
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code D42
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2B52
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D42 C1 C1 C 0 1 N N N N N N 75.619 64.732 14.806 4.230 2.980 0.622 C1 D42 1
D42 C2 C2 C 0 1 N N N N N N 76.304 63.415 15.133 4.435 1.557 1.143 C2 D42 2
D42 N3 N3 N 0 1 N N N N N N 77.772 63.574 15.249 4.127 0.593 0.079 N3 D42 3
D42 C4 C4 C 0 1 N N N N N N 78.391 64.157 14.039 5.066 0.856 -1.019 C4 D42 4
D42 C5 C5 C 0 1 N N N N N N 77.706 65.464 13.624 4.861 2.280 -1.540 C5 D42 5
D42 N6 N6 N 0 1 N N N N N N 76.220 65.362 13.607 5.169 3.243 -0.476 N6 D42 6
D42 C15 C15 C 0 1 N N N N N N 75.437 66.504 13.131 4.839 4.574 -1.004 C15 D42 7
D42 N19 N19 N 0 1 N N N N N N 78.426 62.635 16.235 4.434 -0.644 0.570 N19 D42 8
D42 C20 C20 C 0 1 N N N N N N 78.665 61.339 16.007 3.497 -1.612 0.591 C20 D42 9
D42 N21 N21 N 0 1 N N N N N N 79.494 60.999 15.019 2.288 -1.392 0.037 N21 D42 10
D42 C22 C22 C 0 1 Y N N N N N 80.079 59.727 14.795 1.363 -2.429 -0.049 C22 D42 11
D42 C23 C23 C 0 1 Y N N N N N 79.803 58.500 15.577 1.798 -3.749 -0.122 C23 D42 12
D42 C24 C24 C 0 1 Y N N N N N 80.527 57.271 15.203 0.884 -4.778 -0.207 C24 D42 13
D42 C25 C25 C 0 1 Y N N N N N 81.499 57.274 14.091 -0.476 -4.512 -0.221 C25 D42 14
D42 C26 C26 C 0 1 Y N N N N N 81.749 58.508 13.340 -0.933 -3.203 -0.148 C26 D42 15
D42 C27 C27 C 0 1 Y N N N N N 81.038 59.746 13.675 -0.009 -2.147 -0.056 C27 D42 16
D42 C31 C31 C 0 1 Y N N N N N 82.544 58.835 12.175 -2.305 -2.637 -0.143 C31 D42 17
D42 C32 C32 C 0 1 Y N N N N N 82.316 60.216 11.807 -2.180 -1.179 -0.049 C32 D42 18
D42 C33 C33 C 0 1 N N N N N N 81.372 60.813 12.742 -0.747 -0.870 0.002 C33 D42 19
D42 N34 N34 N 0 1 Y N N N N N 83.400 58.154 11.283 -3.584 -2.917 -0.189 N34 D42 20
D42 N35 N35 N 0 1 Y N N N N N 83.704 59.264 10.296 -4.327 -1.734 -0.130 N35 D42 21
D42 C36 C36 C 0 1 Y N N N N N 83.055 60.484 10.585 -3.476 -0.670 -0.045 C36 D42 22
D42 C37 C37 C 0 1 Y N N N N N 83.083 61.580 9.625 -3.855 0.745 0.036 C37 D42 23
D42 S38 S38 S 0 1 Y N N N N N 81.696 62.739 9.452 -3.149 2.064 1.013 S38 D42 24
D42 C39 C39 C 0 1 Y N N N N N 82.548 63.592 8.086 -4.205 3.333 0.476 C39 D42 25
D42 N40 N40 N 0 1 Y N N N N N 83.810 63.010 7.798 -4.992 2.706 -0.372 N40 D42 26
D42 C41 C41 C 0 1 Y N N N N N 84.107 61.905 8.634 -4.852 1.428 -0.625 C41 D42 27
D42 C42 C42 C 0 1 N N N N N N 85.403 61.188 8.399 -5.762 0.725 -1.600 C42 D42 28
D42 C46 C46 C 0 1 N N N N N N 81.975 64.782 7.328 -4.217 4.785 0.879 C46 D42 29
D42 O47 O47 O 0 1 N N N N N N 78.133 60.471 16.709 3.741 -2.683 1.112 O47 D42 30
D42 O50 O50 O 0 1 N N N N N N 80.854 61.931 12.739 -0.255 0.241 0.083 O50 D42 31
D42 H11 1H1 H 0 1 N N N N N N 74.516 64.605 14.694 4.408 3.691 1.429 H11 D42 32
D42 H12 2H1 H 0 1 N N N N N N 75.622 65.424 15.679 3.208 3.091 0.260 H12 D42 33
D42 H21A 1H2 H 0 0 N N N N N N 75.872 62.948 16.049 3.774 1.383 1.992 H21A D42 34
D42 H22 2H2 H 0 1 N N N N N N 76.038 62.624 14.393 5.471 1.431 1.458 H22 D42 35
D42 H41 1H4 H 0 1 N N N N N N 79.489 64.298 14.172 4.888 0.146 -1.826 H41 D42 36
D42 H42 2H4 H 0 1 N N N N N N 78.410 63.423 13.199 6.088 0.746 -0.657 H42 D42 37
D42 H51 1H5 H 0 1 N N N N N N 78.039 66.310 14.268 3.826 2.405 -1.855 H51 D42 38
D42 H52 2H5 H 0 1 N N N N N N 78.091 65.820 12.640 5.522 2.453 -2.389 H52 D42 39
D42 H151 1H15 H 0 0 N N N N N N 75.889 66.978 12.228 3.781 4.609 -1.265 H151 D42 40
D42 H152 2H15 H 0 0 N N N N N N 74.375 66.216 12.946 5.051 5.328 -0.246 H152 D42 41
D42 H153 3H15 H 0 0 N N N N N N 75.279 67.251 13.943 5.439 4.772 -1.892 H153 D42 42
D42 H19 H19 H 0 1 N N N N N N 77.884 62.688 17.097 5.327 -0.826 0.902 H19 D42 43
D42 H21 H21 H 0 1 N N N N N N 79.696 61.772 14.385 2.063 -0.512 -0.303 H21 D42 44
D42 H23 H23 H 0 1 N N N N N N 79.081 58.501 16.411 2.856 -3.968 -0.113 H23 D42 45
D42 H24 H24 H 0 1 N N N N N N 80.339 56.338 15.761 1.230 -5.799 -0.264 H24 D42 46
D42 H25 H25 H 0 1 N N N N N N 82.040 56.351 13.820 -1.183 -5.326 -0.288 H25 D42 47
D42 H35 H35 H 0 1 N N N N N N 84.312 59.193 9.480 -5.295 -1.678 -0.148 H35 D42 48
D42 H421 1H42 H 0 0 N N N N N N 86.184 61.435 7.643 -5.333 0.779 -2.600 H421 D42 49
D42 H422 2H42 H 0 0 N N N N N N 85.925 61.166 9.384 -5.871 -0.319 -1.306 H422 D42 50
D42 H423 3H42 H 0 0 N N N N N N 85.135 60.119 8.224 -6.739 1.208 -1.597 H423 D42 51
D42 H461 1H46 H 0 0 N N N N N N 82.496 65.304 6.492 -3.569 5.353 0.211 H461 D42 52
D42 H462 2H46 H 0 0 N N N N N N 80.974 64.472 6.945 -5.234 5.172 0.814 H462 D42 53
D42 H463 3H46 H 0 0 N N N N N N 81.718 65.557 8.086 -3.857 4.881 1.903 H463 D42 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D42 C1 C2 SING N N 1
D42 C1 N6 SING N N 2
D42 C1 H11 SING N N 3
D42 C1 H12 SING N N 4
D42 C2 N3 SING N N 5
D42 C2 H21A SING N N 6
D42 C2 H22 SING N N 7
D42 N3 C4 SING N N 8
D42 N3 N19 SING N N 9
D42 C4 C5 SING N N 10
D42 C4 H41 SING N N 11
D42 C4 H42 SING N N 12
D42 C5 N6 SING N N 13
D42 C5 H51 SING N N 14
D42 C5 H52 SING N N 15
D42 N6 C15 SING N N 16
D42 C15 H151 SING N N 17
D42 C15 H152 SING N N 18
D42 C15 H153 SING N N 19
D42 N19 C20 SING N N 20
D42 N19 H19 SING N N 21
D42 C20 N21 SING N N 22
D42 C20 O47 DOUB N N 23
D42 N21 C22 SING N N 24
D42 N21 H21 SING N N 25
D42 C22 C23 DOUB Y N 26
D42 C22 C27 SING Y N 27
D42 C23 C24 SING Y N 28
D42 C23 H23 SING N N 29
D42 C24 C25 DOUB Y N 30
D42 C24 H24 SING N N 31
D42 C25 C26 SING Y N 32
D42 C25 H25 SING N N 33
D42 C26 C27 DOUB Y N 34
D42 C26 C31 SING Y N 35
D42 C27 C33 SING N N 36
D42 C31 C32 SING Y N 37
D42 C31 N34 DOUB Y N 38
D42 C32 C33 SING N N 39
D42 C32 C36 DOUB Y N 40
D42 C33 O50 DOUB N N 41
D42 N34 N35 SING Y N 42
D42 N35 C36 SING Y N 43
D42 N35 H35 SING N N 44
D42 C36 C37 SING Y N 45
D42 C37 S38 SING Y N 46
D42 C37 C41 DOUB Y N 47
D42 S38 C39 SING Y N 48
D42 C39 N40 DOUB Y N 49
D42 C39 C46 SING N N 50
D42 N40 C41 SING Y N 51
D42 C41 C42 SING N N 52
D42 C42 H421 SING N N 53
D42 C42 H422 SING N N 54
D42 C42 H423 SING N N 55
D42 C46 H461 SING N N 56
D42 C46 H462 SING N N 57
D42 C46 H463 SING N N 58
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D42 SMILES ACDLabs 10.04 O=C(NN1CCN(C)CC1)Nc2cccc3c2C(=O)c4c(nnc34)c5sc(nc5C)C
D42 SMILES_CANONICAL CACTVS 3.341 CN1CCN(CC1)NC(=O)Nc2cccc3c4n[nH]c(c5sc(C)nc5C)c4C(=O)c23
D42 SMILES CACTVS 3.341 CN1CCN(CC1)NC(=O)Nc2cccc3c4n[nH]c(c5sc(C)nc5C)c4C(=O)c23
D42 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 Cc1c(sc(n1)C)c2c3c(n[nH]2)-c4cccc(c4C3=O)NC(=O)NN5CCN(CC5)C
D42 SMILES "OpenEye OEToolkits" 1.5.0 Cc1c(sc(n1)C)c2c3c(n[nH]2)-c4cccc(c4C3=O)NC(=O)NN5CCN(CC5)C
D42 InChI InChI 1.03 InChI=1S/C21H23N7O2S/c1-11-20(31-12(2)22-11)18-16-17(24-25-18)13-5-4-6-14(15(13)19(16)29)23-21(30)26-28-9-7-27(3)8-10-28/h4-6H,7-10H2,1-3H3,(H,24,25)(H2,23,26,30)
D42 InChIKey InChI 1.03 KRKQVGZXTNLQSV-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
D42 "SYSTEMATIC NAME" ACDLabs 10.04 1-[3-(2,4-dimethyl-1,3-thiazol-5-yl)-4-oxo-2,4-dihydroindeno[1,2-c]pyrazol-5-yl]-3-(4-methylpiperazin-1-yl)urea
D42 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 3-[3-(2,4-dimethyl-1,3-thiazol-5-yl)-4-oxo-2H-indeno[1,2-c]pyrazol-5-yl]-1-(4-methylpiperazin-1-yl)urea
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D42 'Create component' 2005-09-28 RCSB
D42 'Modify aromatic_flag' 2011-06-04 RCSB
D42 'Modify descriptor' 2011-06-04 RCSB
D42 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id D42
_pdbx_chem_comp_synonyms.name DPH-042562
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id D42
_pdbe_chem_comp_drugbank_details.drugbank_id DB07622
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'1-(3-(2,4-DIMETHYLTHIAZOL-5-YL)-4-OXO-2,4-DIHYDROINDENO[1,2-C]PYRAZOL-5-YL)-3-(4-METHYLPIPERAZIN-1-YL)UREA'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id D42
_pdbe_chem_comp_synonyms.name DPH-042562
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id D42
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07622
_pdbe_chem_comp_drugbank_classification.parent '2,4,5-trisubstituted thiazoles'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Azoles
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as 2,4,5-trisubstituted thiazoles. These are compounds containing a thiazole ring substituted at positions 2, 4 and 5 only.'
#
_pdbe_chem_comp_drugbank_targets.comp_id D42
_pdbe_chem_comp_drugbank_targets.drugbank_id DB07622
_pdbe_chem_comp_drugbank_targets.name 'Cyclin-dependent kinase 2'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P24941
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
D42 C1 C 3.511 4.516 1
D42 C2 C 4.502 3.390 2
D42 N3 N 5.972 3.685 3
D42 C4 C 6.452 5.106 4
D42 C5 C 5.462 6.232 5
D42 N6 N 3.991 5.937 6
D42 C15 C 3.000 7.064 7
D42 N19 N 6.963 2.558 8
D42 C20 C 6.483 1.137 9
D42 N21 N 7.474 0.011 10
D42 C22 C 6.994 -1.410 11
D42 C23 C 5.463 -1.723 12
D42 C24 C 4.980 -3.209 13
D42 C25 C 6.035 -4.362 14
D42 C26 C 7.558 -4.014 15
D42 C27 C 8.021 -2.587 16
D42 C31 C 8.771 -4.895 17
D42 C32 C 9.985 -4.014 18
D42 C33 C 9.521 -2.587 19
D42 N34 N 9.236 -6.312 20
D42 N35 N 10.727 -6.311 21
D42 C36 C 11.189 -4.893 22
D42 C37 C 12.616 -4.432 23
D42 S38 S 13.828 -5.316 24
D42 C39 C 15.043 -4.436 25
D42 N40 N 14.582 -3.009 26
D42 C41 C 13.082 -3.006 27
D42 C42 C 12.203 -1.791 28
D42 C46 C 16.469 -4.902 29
D42 O47 O 5.012 0.842 30
D42 O50 O 10.403 -1.374 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
D42 C1 C2 SINGLE NONE 1
D42 C1 N6 SINGLE NONE 2
D42 C2 N3 SINGLE NONE 3
D42 N3 C4 SINGLE NONE 4
D42 N3 N19 SINGLE NONE 5
D42 C4 C5 SINGLE NONE 6
D42 C5 N6 SINGLE NONE 7
D42 N6 C15 SINGLE NONE 8
D42 N19 C20 SINGLE NONE 9
D42 C20 N21 SINGLE NONE 10
D42 C20 O47 DOUBLE NONE 11
D42 N21 C22 SINGLE NONE 12
D42 C22 C23 DOUBLE NONE 13
D42 C22 C27 SINGLE NONE 14
D42 C23 C24 SINGLE NONE 15
D42 C24 C25 DOUBLE NONE 16
D42 C25 C26 SINGLE NONE 17
D42 C26 C27 DOUBLE NONE 18
D42 C26 C31 SINGLE NONE 19
D42 C27 C33 SINGLE NONE 20
D42 C31 C32 SINGLE NONE 21
D42 C31 N34 DOUBLE NONE 22
D42 C32 C33 SINGLE NONE 23
D42 C32 C36 DOUBLE NONE 24
D42 C33 O50 DOUBLE NONE 25
D42 N34 N35 SINGLE NONE 26
D42 N35 C36 SINGLE NONE 27
D42 C36 C37 SINGLE NONE 28
D42 C37 S38 SINGLE NONE 29
D42 C37 C41 DOUBLE NONE 30
D42 S38 C39 SINGLE NONE 31
D42 C39 N40 DOUBLE NONE 32
D42 C39 C46 SINGLE NONE 33
D42 N40 C41 SINGLE NONE 34
D42 C41 C42 SINGLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
D42 MurckoScaffold S1 scaffold 'O=C(Nc1cccc2c1C(=O)c1c-2n[nH]c1-c1cncs1)NN1CCNCC1' InChI=1S/C18H17N7O2S/c26-17-13-10(15-14(17)16(23-22-15)12-8-20-9-28-12)2-1-3-11(13)21-18(27)24-25-6-4-19-5-7-25/h1-3,8-9,19H,4-7H2,(H,22,23)(H2,21,24,27) FJQJAGIHYRHNPQ-UHFFFAOYSA-N
D42 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
D42 piperazine F2 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
D42 pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
D42 thiazole F4 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
D42 C1 S1 1
D42 C2 S1 1
D42 N3 S1 1
D42 C4 S1 1
D42 C5 S1 1
D42 N6 S1 1
D42 N19 S1 1
D42 C20 S1 1
D42 N21 S1 1
D42 C22 S1 1
D42 C23 S1 1
D42 C24 S1 1
D42 C25 S1 1
D42 C26 S1 1
D42 C27 S1 1
D42 C31 S1 1
D42 C32 S1 1
D42 C33 S1 1
D42 N34 S1 1
D42 N35 S1 1
D42 C36 S1 1
D42 C37 S1 1
D42 S38 S1 1
D42 C39 S1 1
D42 N40 S1 1
D42 C41 S1 1
D42 O47 S1 1
D42 O50 S1 1
D42 C22 F1 1
D42 C23 F1 1
D42 C24 F1 1
D42 C25 F1 1
D42 C26 F1 1
D42 C27 F1 1
D42 N3 F2 1
D42 C2 F2 1
D42 C1 F2 1
D42 N6 F2 1
D42 C5 F2 1
D42 C4 F2 1
D42 C31 F3 1
D42 C32 F3 1
D42 C36 F3 1
D42 N35 F3 1
D42 N34 F3 1
D42 C37 F4 1
D42 C41 F4 1
D42 N40 F4 1
D42 C39 F4 1
D42 S38 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id D42
_pdbe_chem_comp_rdkit_properties.exactmw 437.163
_pdbe_chem_comp_rdkit_properties.amw 437.529
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 54
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 215.477
_pdbe_chem_comp_rdkit_properties.tpsa 106.250
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.286
_pdbe_chem_comp_rdkit_properties.CrippenMR 114.731
_pdbe_chem_comp_rdkit_properties.chi0v 15.672
_pdbe_chem_comp_rdkit_properties.chi1v 8.966
_pdbe_chem_comp_rdkit_properties.chi2v 4.916
_pdbe_chem_comp_rdkit_properties.chi3v 4.916
_pdbe_chem_comp_rdkit_properties.chi4v 3.562
_pdbe_chem_comp_rdkit_properties.chi0n 37.855
_pdbe_chem_comp_rdkit_properties.chi1n 19.491
_pdbe_chem_comp_rdkit_properties.chi2n 4.040
_pdbe_chem_comp_rdkit_properties.chi3n 4.040
_pdbe_chem_comp_rdkit_properties.chi4n 2.850
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.080
_pdbe_chem_comp_rdkit_properties.kappa1 6.708
_pdbe_chem_comp_rdkit_properties.kappa2 7.557
_pdbe_chem_comp_rdkit_properties.kappa3 3.420
_pdbe_chem_comp_rdkit_properties.Phi 1.635
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
D42 UniChem ChEMBL CHEMBL325023
D42 UniChem DrugBank DB07622
D42 UniChem PDBe D42
D42 UniChem ZINC ZINC000000595002
D42 UniChem SureChEMBL SCHEMBL6754798
D42 UniChem 'PubChem TPHARMA' 15153421
D42 UniChem Nikkaji J2.042.676D
D42 UniChem BindingDb 6051
D42 UniChem 'Probes And Drugs' PD005616
D42 UniChem PubChem 5288018
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
D42 C1 -5.218 0.375 -2.061 ETKDGv3 1
D42 C2 -3.890 0.732 -1.357 ETKDGv3 2
D42 N3 -4.041 0.758 0.111 ETKDGv3 3
D42 C4 -4.986 -0.251 0.604 ETKDGv3 4
D42 C5 -6.400 0.071 0.083 ETKDGv3 5
D42 N6 -6.401 0.728 -1.249 ETKDGv3 6
D42 C15 -6.580 2.187 -1.148 ETKDGv3 7
D42 N19 -2.788 0.653 0.758 ETKDGv3 8
D42 C20 -1.943 -0.514 0.739 ETKDGv3 9
D42 N21 -0.699 -0.494 1.455 ETKDGv3 10
D42 C22 0.133 -1.650 1.646 ETKDGv3 11
D42 C23 -0.392 -2.864 1.926 ETKDGv3 12
D42 C24 0.491 -4.041 2.159 ETKDGv3 13
D42 C25 1.826 -3.911 2.121 ETKDGv3 14
D42 C26 2.393 -2.579 1.856 ETKDGv3 15
D42 C27 1.609 -1.521 1.622 ETKDGv3 16
D42 C31 3.785 -2.203 1.640 ETKDGv3 17
D42 C32 3.824 -0.818 1.273 ETKDGv3 18
D42 C33 2.436 -0.377 1.198 ETKDGv3 19
D42 N34 4.681 -2.886 1.011 ETKDGv3 20
D42 N35 5.460 -1.958 0.304 ETKDGv3 21
D42 C36 4.839 -0.677 0.431 ETKDGv3 22
D42 C37 5.009 0.411 -0.546 ETKDGv3 23
D42 S38 5.313 0.143 -2.280 ETKDGv3 24
D42 C39 5.380 1.903 -2.533 ETKDGv3 25
D42 N40 5.239 2.570 -1.432 ETKDGv3 26
D42 C41 5.031 1.728 -0.286 ETKDGv3 27
D42 C42 4.894 2.323 1.083 ETKDGv3 28
D42 C46 5.676 2.553 -3.841 ETKDGv3 29
D42 O47 -2.272 -1.532 0.073 ETKDGv3 30
D42 O50 2.019 0.710 0.720 ETKDGv3 31
D42 H11 -5.238 -0.719 -2.259 ETKDGv3 32
D42 H12 -5.265 0.871 -3.056 ETKDGv3 33
D42 H21A -3.569 1.743 -1.689 ETKDGv3 34
D42 H22 -3.108 0.016 -1.684 ETKDGv3 35
D42 H41 -4.700 -1.267 0.257 ETKDGv3 36
D42 H42 -4.997 -0.255 1.716 ETKDGv3 37
D42 H51 -6.932 0.692 0.837 ETKDGv3 38
D42 H52 -6.974 -0.878 0.007 ETKDGv3 39
D42 H151 -5.787 2.654 -0.525 ETKDGv3 40
D42 H152 -7.569 2.413 -0.696 ETKDGv3 41
D42 H153 -6.569 2.651 -2.158 ETKDGv3 42
D42 H19 -2.468 1.476 1.316 ETKDGv3 43
D42 H21 -0.347 0.427 1.797 ETKDGv3 44
D42 H23 -1.462 -2.997 2.009 ETKDGv3 45
D42 H24 0.049 -5.008 2.360 ETKDGv3 46
D42 H25 2.471 -4.765 2.281 ETKDGv3 47
D42 H35 6.197 -2.221 -0.388 ETKDGv3 48
D42 H421 5.397 3.312 1.112 ETKDGv3 49
D42 H422 5.367 1.672 1.848 ETKDGv3 50
D42 H423 3.823 2.467 1.328 ETKDGv3 51
D42 H461 5.167 3.538 -3.901 ETKDGv3 52
D42 H462 5.315 1.910 -4.671 ETKDGv3 53
D42 H463 6.771 2.699 -3.941 ETKDGv3 54
#