data_D6T
#
_chem_comp.id D6T
_chem_comp.name
~{N}-[5-[1-[4-[2-[6-methoxy-7-[2-[2-(2-methoxyethoxy)ethoxy]ethoxy]-3,4-dihydro-1~{H}-isoquinolin-2-yl]ethyl]phenyl]-1,2,3-triazol-4-yl]-2-propanoyl-phenyl]quinoline-2-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C46 H50 N6 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-01-03
_chem_comp.pdbx_modified_date 2018-04-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 798.925
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code D6T
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6FEQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D6T C1 C1 C 0 1 Y N N N N N 119.396 120.108 120.183 7.120 -1.589 2.859 C1 D6T 1
D6T C2 C2 C 0 1 Y N N N N N 119.130 120.040 118.672 8.292 -1.106 2.263 C2 D6T 2
D6T C3 C3 C 0 1 Y N N N N N 119.555 121.018 117.875 8.220 -0.414 1.039 C3 D6T 3
D6T C4 C4 C 0 1 Y N N N N N 120.316 122.218 118.469 6.989 -0.216 0.435 C4 D6T 4
D6T C10 C5 C 0 1 N N N N N N 118.607 122.058 115.743 9.350 1.232 -0.242 C10 D6T 5
D6T C11 C6 C 0 1 Y N N N N N 118.337 121.986 114.217 10.553 1.689 -0.979 C11 D6T 6
D6T C12 C7 C 0 1 Y N N N N N 117.623 120.751 112.356 12.748 1.319 -1.600 C12 D6T 7
D6T C13 C8 C 0 1 Y N N N N N 117.856 121.839 111.527 12.764 2.533 -2.336 C13 D6T 8
D6T C14 C9 C 0 1 Y N N N N N 118.337 123.014 112.064 11.606 3.333 -2.365 C14 D6T 9
D6T C15 C10 C 0 1 Y N N N N N 118.582 123.095 113.418 10.505 2.901 -1.683 C15 D6T 10
D6T C16 C11 C 0 1 Y N N N N N 121.318 123.495 120.378 4.516 -0.491 0.397 C16 D6T 11
D6T C17 C12 C 0 1 Y N N N N N 122.212 123.450 121.448 3.315 -0.914 0.883 C17 D6T 12
D6T C18 C13 C 0 1 Y N N N N N 123.661 125.173 122.724 0.990 -0.738 0.087 C18 D6T 13
D6T C19 C14 C 0 1 Y N N N N N 123.290 125.206 123.998 0.144 -0.269 -0.909 C19 D6T 14
D6T C20 C15 C 0 1 Y N N N N N 124.304 125.634 125.089 -1.217 -0.491 -0.817 C20 D6T 15
D6T C21 C16 C 0 1 Y N N N N N 125.544 125.967 124.750 -1.735 -1.179 0.264 C21 D6T 16
D6T C22 C17 C 0 1 Y N N N N N 125.975 125.928 123.270 -0.895 -1.646 1.258 C22 D6T 17
D6T C23 C18 C 0 1 Y N N N N N 125.101 125.560 122.330 0.466 -1.427 1.172 C23 D6T 18
D6T C24 C19 C 0 1 N N N N N N 126.567 126.399 125.849 -3.220 -1.419 0.361 C24 D6T 19
D6T C25 C20 C 0 1 N N N N N N 127.586 127.403 125.245 -3.568 -2.743 -0.322 C25 D6T 20
D6T C26 C21 C 0 1 N N N N N N 129.145 127.095 123.497 -5.760 -1.979 -1.002 C26 D6T 21
D6T C27 C22 C 0 1 Y N N N N N 130.432 127.666 122.987 -7.235 -2.287 -0.979 C27 D6T 22
D6T C28 C23 C 0 1 Y N N N N N 131.490 127.993 123.923 -7.713 -3.530 -0.622 C28 D6T 23
D6T C29 C24 C 0 1 N N N N N N 131.278 127.746 125.456 -6.785 -4.650 -0.226 C29 D6T 24
D6T C30 C25 C 0 1 N N N N N N 129.899 126.989 125.740 -5.360 -4.334 -0.682 C30 D6T 25
D6T C31 C26 C 0 1 Y N N N N N 130.819 127.984 121.449 -8.123 -1.280 -1.329 C31 D6T 26
D6T C32 C27 C 0 1 Y N N N N N 131.987 128.489 121.106 -9.486 -1.515 -1.325 C32 D6T 27
D6T C33 C28 C 0 1 Y N N N N N 132.892 128.769 121.908 -9.967 -2.772 -0.968 C33 D6T 28
D6T C34 C29 C 0 1 Y N N N N N 132.808 128.597 123.212 -9.078 -3.772 -0.618 C34 D6T 29
D6T C35 C30 C 0 1 N N N N N N 134.144 130.716 121.410 -11.726 -4.326 -0.584 C35 D6T 30
D6T C36 C31 C 0 1 Y N N N N N 117.136 119.558 111.821 13.910 0.524 -1.567 C36 D6T 31
D6T C37 C32 C 0 1 Y N N N N N 116.885 119.461 110.459 15.023 0.928 -2.237 C37 D6T 32
D6T C38 C33 C 0 1 Y N N N N N 117.117 120.550 109.629 15.035 2.121 -2.959 C38 D6T 33
D6T C39 C34 C 0 1 Y N N N N N 117.603 121.741 110.161 13.932 2.916 -3.016 C39 D6T 34
D6T C40 C35 C 0 1 N N N N N N 132.902 127.672 119.049 -9.784 0.738 -2.025 C40 D6T 35
D6T C41 C36 C 0 1 N N N N N N 134.260 128.215 118.528 -10.903 1.719 -2.379 C41 D6T 36
D6T C42 C37 C 0 1 N N N N N N 135.221 129.575 116.807 -12.777 2.883 -1.442 C42 D6T 37
D6T C43 C38 C 0 1 N N N N N N 134.888 129.966 115.339 -13.554 3.082 -0.139 C43 D6T 38
D6T C44 C39 C 0 1 N N N N N N 135.871 129.668 113.189 -13.347 3.955 2.084 C44 D6T 39
D6T C45 C40 C 0 1 N N N N N N 136.663 130.682 112.322 -12.360 4.640 3.031 C45 D6T 40
D6T C46 C41 C 0 1 N N N N N N 136.299 132.219 110.555 -11.116 6.666 3.340 C46 D6T 41
D6T C5 C42 C 0 1 Y N N N N N 120.546 122.277 119.775 5.833 -0.702 1.042 C5 D6T 42
D6T C6 C43 C 0 1 Y N N N N N 120.054 121.146 120.696 5.912 -1.389 2.257 C6 D6T 43
D6T C7 C44 C 0 1 N N N N N N 118.371 118.843 118.079 9.588 -1.321 2.910 C7 D6T 44
D6T C8 C45 C 0 1 N N N N N N 118.511 117.457 118.715 9.653 -1.962 4.273 C8 D6T 45
D6T C9 C46 C 0 1 N N N N N N 117.284 117.167 119.578 11.113 -2.069 4.717 C9 D6T 46
D6T N1 N1 N 0 1 N N N N N N 119.298 120.951 116.421 9.378 0.069 0.439 N1 D6T 47
D6T N2 N2 N 0 1 Y N N N N N 117.868 120.850 113.674 11.644 0.948 -0.953 N2 D6T 48
D6T N3 N3 N 0 1 Y N N N N N 122.686 124.761 121.675 2.372 -0.519 -0.005 N3 D6T 49
D6T N4 N4 N 0 1 Y N N N N N 122.084 125.594 120.751 3.047 0.152 -1.035 N4 D6T 50
D6T N5 N5 N 0 1 Y N N N N N 121.233 124.807 119.943 4.306 0.143 -0.767 N5 D6T 51
D6T N6 N6 N 0 1 N N N N N N 128.791 126.683 124.818 -5.015 -2.977 -0.228 N6 D6T 52
D6T O1 O1 O 0 1 N N N N N N 117.678 118.992 117.129 10.610 -0.983 2.350 O1 D6T 53
D6T O2 O2 O 0 1 N N N N N N 118.256 123.004 116.362 8.339 1.905 -0.253 O2 D6T 54
D6T O3 O3 O 0 1 N N N N N N 134.109 129.309 121.421 -11.306 -3.014 -0.962 O3 D6T 55
D6T O4 O4 O 0 1 N N N N N N 132.194 128.720 119.711 -10.351 -0.525 -1.669 O4 D6T 56
D6T O5 O5 O 0 1 N N N N N N 134.029 129.139 117.466 -11.697 1.974 -1.219 O5 D6T 57
D6T O6 O6 O 0 1 N N N N N N 136.081 129.955 114.563 -12.714 3.722 0.824 O6 D6T 58
D6T O7 O7 O 0 1 N N N N N N 135.912 131.005 111.169 -12.036 5.937 2.525 O7 D6T 59
D6T H1 H1 H 0 1 N N N N N N 119.050 119.315 120.829 7.172 -2.124 3.796 H1 D6T 60
D6T H2 H2 H 0 1 N N N N N N 120.662 123.011 117.823 6.925 0.315 -0.503 H2 D6T 61
D6T H3 H3 H 0 1 N N N N N N 118.521 123.867 111.427 11.588 4.261 -2.917 H3 D6T 62
D6T H4 H4 H 0 1 N N N N N N 118.960 124.009 113.852 9.601 3.491 -1.686 H4 D6T 63
D6T H5 H5 H 0 1 N N N N N N 122.492 122.568 122.005 3.148 -1.460 1.801 H5 D6T 64
D6T H6 H6 H 0 1 N N N N N N 122.282 124.935 124.274 0.549 0.268 -1.753 H6 D6T 65
D6T H7 H7 H 0 1 N N N N N N 124.002 125.661 126.126 -1.875 -0.127 -1.592 H7 D6T 66
D6T H8 H8 H 0 1 N N N N N N 126.983 126.198 122.994 -1.303 -2.182 2.102 H8 D6T 67
D6T H9 H9 H 0 1 N N N N N N 125.403 125.533 121.293 1.122 -1.793 1.948 H9 D6T 68
D6T H10 H10 H 0 1 N N N N N N 126.030 126.878 126.681 -3.514 -1.463 1.410 H10 D6T 69
D6T H11 H11 H 0 1 N N N N N N 127.102 125.512 126.220 -3.753 -0.605 -0.132 H11 D6T 70
D6T H12 H12 H 0 1 N N N N N N 127.856 128.152 126.004 -3.274 -2.699 -1.371 H12 D6T 71
D6T H13 H13 H 0 1 N N N N N N 127.134 127.907 124.378 -3.035 -3.557 0.170 H13 D6T 72
D6T H14 H14 H 0 1 N N N N N N 128.392 127.854 123.240 -5.407 -1.987 -2.034 H14 D6T 73
D6T H15 H15 H 0 1 N N N N N N 132.108 127.133 125.838 -6.801 -4.768 0.857 H15 D6T 74
D6T H16 H16 H 0 1 N N N N N N 129.429 127.575 126.544 -4.668 -5.053 -0.244 H16 D6T 75
D6T H17 H17 H 0 1 N N N N N N 130.095 127.775 120.676 -7.747 -0.306 -1.606 H17 D6T 76
D6T H18 H18 H 0 1 N N N N N N 133.652 128.870 123.828 -9.450 -4.748 -0.341 H18 D6T 77
D6T H19 H19 H 0 1 N N N N N N 135.115 131.056 121.021 -12.814 -4.385 -0.622 H19 D6T 78
D6T H20 H20 H 0 1 N N N N N N 133.338 131.098 120.767 -11.299 -5.057 -1.272 H20 D6T 79
D6T H21 H21 H 0 1 N N N N N N 134.006 131.094 122.434 -11.385 -4.539 0.429 H21 D6T 80
D6T H22 H22 H 0 1 N N N N N N 116.954 118.711 112.466 13.917 -0.402 -1.012 H22 D6T 81
D6T H23 H23 H 0 1 N N N N N N 116.509 118.537 110.044 15.911 0.315 -2.209 H23 D6T 82
D6T H24 H24 H 0 1 N N N N N N 116.920 120.473 108.570 15.932 2.417 -3.482 H24 D6T 83
D6T H25 H25 H 0 1 N N N N N N 117.784 122.588 109.515 13.955 3.837 -3.579 H25 D6T 84
D6T H26 H26 H 0 1 N N N N N N 132.305 127.304 118.202 -9.126 0.611 -2.885 H26 D6T 85
D6T H27 H27 H 0 1 N N N N N N 133.083 126.848 119.755 -9.211 1.128 -1.184 H27 D6T 86
D6T H28 H28 H 0 1 N N N N N N 134.872 127.378 118.159 -10.469 2.653 -2.735 H28 D6T 87
D6T H29 H29 H 0 1 N N N N N N 134.790 128.723 119.347 -11.530 1.288 -3.160 H29 D6T 88
D6T H30 H30 H 0 1 N N N N N N 135.961 128.761 116.811 -13.442 2.477 -2.204 H30 D6T 89
D6T H31 H31 H 0 1 N N N N N N 135.633 130.448 117.334 -12.381 3.842 -1.779 H31 D6T 90
D6T H32 H32 H 0 1 N N N N N N 134.447 130.973 115.319 -14.429 3.704 -0.329 H32 D6T 91
D6T H33 H33 H 0 1 N N N N N N 134.172 129.244 114.921 -13.874 2.113 0.245 H33 D6T 92
D6T H34 H34 H 0 1 N N N N N N 134.798 129.747 112.958 -13.662 3.004 2.513 H34 D6T 93
D6T H35 H35 H 0 1 N N N N N N 136.219 128.648 112.970 -14.217 4.595 1.940 H35 D6T 94
D6T H36 H36 H 0 1 N N N N N N 137.623 130.236 112.021 -12.812 4.738 4.018 H36 D6T 95
D6T H37 H37 H 0 1 N N N N N N 136.850 131.596 112.905 -11.452 4.042 3.105 H37 D6T 96
D6T H38 H38 H 0 1 N N N N N N 135.671 132.399 109.670 -11.542 6.806 4.333 H38 D6T 97
D6T H39 H39 H 0 1 N N N N N N 136.173 133.047 111.268 -10.182 6.109 3.420 H39 D6T 98
D6T H40 H40 H 0 1 N N N N N N 137.354 132.155 110.250 -10.922 7.638 2.888 H40 D6T 99
D6T H41 H41 H 0 1 N N N N N N 120.242 121.194 121.758 5.012 -1.767 2.719 H41 D6T 100
D6T H42 H42 H 0 1 N N N N N N 118.591 116.697 117.924 9.099 -1.354 4.987 H42 D6T 101
D6T H43 H43 H 0 1 N N N N N N 119.415 117.431 119.342 9.213 -2.959 4.227 H43 D6T 102
D6T H44 H44 H 0 1 N N N N N N 117.384 116.172 120.035 11.667 -2.678 4.003 H44 D6T 103
D6T H45 H45 H 0 1 N N N N N N 117.204 117.927 120.369 11.553 -1.073 4.764 H45 D6T 104
D6T H46 H46 H 0 1 N N N N N N 116.380 117.194 118.951 11.160 -2.533 5.703 H46 D6T 105
D6T H47 H47 H 0 1 N N N N N N 119.594 120.152 115.898 10.207 -0.430 0.512 H47 D6T 106
D6T H48 H48 H 0 1 N N N N N N 128.985 126.197 122.882 -5.592 -0.992 -0.572 H48 D6T 107
D6T H49 H49 H 0 1 N N N N N N 131.268 128.715 125.977 -7.117 -5.577 -0.694 H49 D6T 108
D6T H50 H50 H 0 1 N N N N N N 130.204 126.008 126.132 -5.303 -4.385 -1.769 H50 D6T 109
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D6T C38 C39 DOUB Y N 1
D6T C38 C37 SING Y N 2
D6T C39 C13 SING Y N 3
D6T C37 C36 DOUB Y N 4
D6T C46 O7 SING N N 5
D6T O7 C45 SING N N 6
D6T C13 C14 DOUB Y N 7
D6T C13 C12 SING Y N 8
D6T C36 C12 SING Y N 9
D6T C14 C15 SING Y N 10
D6T C45 C44 SING N N 11
D6T C12 N2 DOUB Y N 12
D6T C44 O6 SING N N 13
D6T C15 C11 DOUB Y N 14
D6T N2 C11 SING Y N 15
D6T C11 C10 SING N N 16
D6T O6 C43 SING N N 17
D6T C43 C42 SING N N 18
D6T C10 O2 DOUB N N 19
D6T C10 N1 SING N N 20
D6T N1 C3 SING N N 21
D6T C42 O5 SING N N 22
D6T O1 C7 DOUB N N 23
D6T O5 C41 SING N N 24
D6T C3 C4 DOUB Y N 25
D6T C3 C2 SING Y N 26
D6T C7 C2 SING N N 27
D6T C7 C8 SING N N 28
D6T C4 C5 SING Y N 29
D6T C41 C40 SING N N 30
D6T C2 C1 DOUB Y N 31
D6T C8 C9 SING N N 32
D6T C40 O4 SING N N 33
D6T O4 C32 SING N N 34
D6T C5 C16 SING N N 35
D6T C5 C6 DOUB Y N 36
D6T N5 C16 SING Y N 37
D6T N5 N4 DOUB Y N 38
D6T C1 C6 SING Y N 39
D6T C16 C17 DOUB Y N 40
D6T N4 N3 SING Y N 41
D6T C32 C31 DOUB Y N 42
D6T C32 C33 SING Y N 43
D6T C35 O3 SING N N 44
D6T O3 C33 SING N N 45
D6T C17 N3 SING Y N 46
D6T C31 C27 SING Y N 47
D6T N3 C18 SING N N 48
D6T C33 C34 DOUB Y N 49
D6T C23 C18 DOUB Y N 50
D6T C23 C22 SING Y N 51
D6T C18 C19 SING Y N 52
D6T C27 C26 SING N N 53
D6T C27 C28 DOUB Y N 54
D6T C34 C28 SING Y N 55
D6T C22 C21 DOUB Y N 56
D6T C26 N6 SING N N 57
D6T C28 C29 SING N N 58
D6T C19 C20 DOUB Y N 59
D6T C21 C20 SING Y N 60
D6T C21 C24 SING N N 61
D6T N6 C25 SING N N 62
D6T N6 C30 SING N N 63
D6T C25 C24 SING N N 64
D6T C29 C30 SING N N 65
D6T C1 H1 SING N N 66
D6T C4 H2 SING N N 67
D6T C14 H3 SING N N 68
D6T C15 H4 SING N N 69
D6T C17 H5 SING N N 70
D6T C19 H6 SING N N 71
D6T C20 H7 SING N N 72
D6T C22 H8 SING N N 73
D6T C23 H9 SING N N 74
D6T C24 H10 SING N N 75
D6T C24 H11 SING N N 76
D6T C25 H12 SING N N 77
D6T C25 H13 SING N N 78
D6T C26 H14 SING N N 79
D6T C29 H15 SING N N 80
D6T C30 H16 SING N N 81
D6T C31 H17 SING N N 82
D6T C34 H18 SING N N 83
D6T C35 H19 SING N N 84
D6T C35 H20 SING N N 85
D6T C35 H21 SING N N 86
D6T C36 H22 SING N N 87
D6T C37 H23 SING N N 88
D6T C38 H24 SING N N 89
D6T C39 H25 SING N N 90
D6T C40 H26 SING N N 91
D6T C40 H27 SING N N 92
D6T C41 H28 SING N N 93
D6T C41 H29 SING N N 94
D6T C42 H30 SING N N 95
D6T C42 H31 SING N N 96
D6T C43 H32 SING N N 97
D6T C43 H33 SING N N 98
D6T C44 H34 SING N N 99
D6T C44 H35 SING N N 100
D6T C45 H36 SING N N 101
D6T C45 H37 SING N N 102
D6T C46 H38 SING N N 103
D6T C46 H39 SING N N 104
D6T C46 H40 SING N N 105
D6T C6 H41 SING N N 106
D6T C8 H42 SING N N 107
D6T C8 H43 SING N N 108
D6T C9 H44 SING N N 109
D6T C9 H45 SING N N 110
D6T C9 H46 SING N N 111
D6T N1 H47 SING N N 112
D6T C26 H48 SING N N 113
D6T C29 H49 SING N N 114
D6T C30 H50 SING N N 115
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D6T InChI InChI 1.03 InChI=1S/C46H50N6O7/c1-4-43(53)38-15-11-35(27-41(38)48-46(54)40-16-12-33-7-5-6-8-39(33)47-40)42-31-52(50-49-42)37-13-9-32(10-14-37)17-19-51-20-18-34-28-44(56-3)45(29-36(34)30-51)59-26-25-58-24-23-57-22-21-55-2/h5-16,27-29,31H,4,17-26,30H2,1-3H3,(H,48,54)
D6T InChIKey InChI 1.03 CHAZSVOPUAINSR-UHFFFAOYSA-N
D6T SMILES_CANONICAL CACTVS 3.385 CCC(=O)c1ccc(cc1NC(=O)c2ccc3ccccc3n2)c4cn(nn4)c5ccc(CCN6CCc7cc(OC)c(OCCOCCOCCOC)cc7C6)cc5
D6T SMILES CACTVS 3.385 CCC(=O)c1ccc(cc1NC(=O)c2ccc3ccccc3n2)c4cn(nn4)c5ccc(CCN6CCc7cc(OC)c(OCCOCCOCCOC)cc7C6)cc5
D6T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CCC(=O)c1ccc(cc1NC(=O)c2ccc3ccccc3n2)c4cn(nn4)c5ccc(cc5)CCN6CCc7cc(c(cc7C6)OCCOCCOCCOC)OC
D6T SMILES "OpenEye OEToolkits" 2.0.6 CCC(=O)c1ccc(cc1NC(=O)c2ccc3ccccc3n2)c4cn(nn4)c5ccc(cc5)CCN6CCc7cc(c(cc7C6)OCCOCCOCCOC)OC
#
_pdbx_chem_comp_identifier.comp_id D6T
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
~{N}-[5-[1-[4-[2-[6-methoxy-7-[2-[2-(2-methoxyethoxy)ethoxy]ethoxy]-3,4-dihydro-1~{H}-isoquinolin-2-yl]ethyl]phenyl]-1,2,3-triazol-4-yl]-2-propanoyl-phenyl]quinoline-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D6T 'Create component' 2018-01-03 EBI
D6T 'Initial release' 2018-04-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
D6T C1 C 25.815 -4.229 1
D6T C2 C 27.306 -4.392 2
D6T C3 C 28.193 -3.182 3
D6T C4 C 27.588 -1.809 4
D6T C10 C 30.570 -2.134 5
D6T C11 C 32.062 -2.297 6
D6T C12 C 34.439 -1.249 7
D6T C13 C 35.044 -2.622 8
D6T C14 C 34.157 -3.832 9
D6T C15 C 32.666 -3.669 10
D6T C16 C 25.492 -0.274 11
D6T C17 C 24.026 0.044 12
D6T C18 C 22.579 2.291 13
D6T C19 C 21.277 1.546 14
D6T C20 C 19.981 2.301 15
D6T C21 C 19.986 3.801 16
D6T C22 C 21.288 4.546 17
D6T C23 C 22.585 3.791 18
D6T C24 C 18.690 4.556 19
D6T C25 C 17.388 3.811 20
D6T C26 C 14.733 3.795 21
D6T C27 C 13.392 4.597 22
D6T C28 C 13.392 6.097 23
D6T C29 C 14.733 6.899 24
D6T C30 C 16.092 6.129 25
D6T C31 C 12.093 3.847 26
D6T C32 C 10.794 4.597 27
D6T C33 C 10.794 6.097 28
D6T C34 C 12.093 6.847 29
D6T C35 C 9.495 8.347 30
D6T C36 C 35.343 0.025 31
D6T C37 C 36.897 -0.132 32
D6T C38 C 37.527 -1.562 33
D6T C39 C 36.594 -2.815 34
D6T C40 C 9.495 2.347 35
D6T C41 C 8.196 1.597 36
D6T C42 C 6.897 -0.653 37
D6T C43 C 6.897 -2.153 38
D6T C44 C 5.598 -4.403 39
D6T C45 C 4.299 -5.153 40
D6T C46 C 3.000 -7.403 41
D6T C5 C 26.097 -1.647 42
D6T C6 C 25.210 -2.857 43
D6T C7 C 27.911 -5.764 44
D6T C8 C 27.025 -6.975 45
D6T C9 C 27.630 -8.347 46
D6T N1 N 29.684 -3.344 47
D6T N2 N 32.948 -1.087 48
D6T N3 N 23.875 1.536 49
D6T N4 N 25.248 2.141 50
D6T N5 N 26.247 1.022 51
D6T N6 N 16.092 4.566 52
D6T O1 O 29.402 -5.927 53
D6T O2 O 29.965 -0.762 54
D6T O3 O 9.495 6.847 55
D6T O4 O 9.495 3.847 56
D6T O5 O 8.196 0.097 57
D6T O6 O 5.598 -2.903 58
D6T O7 O 4.299 -6.653 59
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
D6T C38 C39 DOUBLE NONE 1
D6T C38 C37 SINGLE NONE 2
D6T C39 C13 SINGLE NONE 3
D6T C37 C36 DOUBLE NONE 4
D6T C46 O7 SINGLE NONE 5
D6T O7 C45 SINGLE NONE 6
D6T C13 C14 DOUBLE NONE 7
D6T C13 C12 SINGLE NONE 8
D6T C36 C12 SINGLE NONE 9
D6T C14 C15 SINGLE NONE 10
D6T C45 C44 SINGLE NONE 11
D6T C12 N2 DOUBLE NONE 12
D6T C44 O6 SINGLE NONE 13
D6T C15 C11 DOUBLE NONE 14
D6T N2 C11 SINGLE NONE 15
D6T C11 C10 SINGLE NONE 16
D6T O6 C43 SINGLE NONE 17
D6T C43 C42 SINGLE NONE 18
D6T C10 O2 DOUBLE NONE 19
D6T C10 N1 SINGLE NONE 20
D6T N1 C3 SINGLE NONE 21
D6T C42 O5 SINGLE NONE 22
D6T O1 C7 DOUBLE NONE 23
D6T O5 C41 SINGLE NONE 24
D6T C3 C4 DOUBLE NONE 25
D6T C3 C2 SINGLE NONE 26
D6T C7 C2 SINGLE NONE 27
D6T C7 C8 SINGLE NONE 28
D6T C4 C5 SINGLE NONE 29
D6T C41 C40 SINGLE NONE 30
D6T C2 C1 DOUBLE NONE 31
D6T C8 C9 SINGLE NONE 32
D6T C40 O4 SINGLE NONE 33
D6T O4 C32 SINGLE NONE 34
D6T C5 C16 SINGLE NONE 35
D6T C5 C6 DOUBLE NONE 36
D6T N5 C16 SINGLE NONE 37
D6T N5 N4 DOUBLE NONE 38
D6T C1 C6 SINGLE NONE 39
D6T C16 C17 DOUBLE NONE 40
D6T N4 N3 SINGLE NONE 41
D6T C32 C31 DOUBLE NONE 42
D6T C32 C33 SINGLE NONE 43
D6T C35 O3 SINGLE NONE 44
D6T O3 C33 SINGLE NONE 45
D6T C17 N3 SINGLE NONE 46
D6T C31 C27 SINGLE NONE 47
D6T N3 C18 SINGLE NONE 48
D6T C33 C34 DOUBLE NONE 49
D6T C23 C18 SINGLE NONE 50
D6T C23 C22 DOUBLE NONE 51
D6T C18 C19 DOUBLE NONE 52
D6T C27 C26 SINGLE NONE 53
D6T C27 C28 DOUBLE NONE 54
D6T C34 C28 SINGLE NONE 55
D6T C22 C21 SINGLE NONE 56
D6T C26 N6 SINGLE NONE 57
D6T C28 C29 SINGLE NONE 58
D6T C19 C20 SINGLE NONE 59
D6T C21 C20 DOUBLE NONE 60
D6T C21 C24 SINGLE NONE 61
D6T N6 C25 SINGLE NONE 62
D6T N6 C30 SINGLE NONE 63
D6T C25 C24 SINGLE NONE 64
D6T C29 C30 SINGLE NONE 65
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
D6T MurckoScaffold S1 scaffold O=C(Nc1cccc(-c2cn(-c3ccc(CCN4CCc5ccccc5C4)cc3)nn2)c1)c1ccc2ccccc2n1 InChI=1S/C35H30N6O/c42-35(33-17-14-27-7-3-4-11-32(27)37-33)36-30-10-5-9-28(22-30)34-24-41(39-38-34)31-15-12-25(13-16-31)18-20-40-21-19-26-6-1-2-8-29(26)23-40/h1-17,22,24H,18-21,23H2,(H,36,42) GNSQAXTXVFPCER-UHFFFAOYSA-N
D6T amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
D6T phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
D6T pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
D6T quinoline F4 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
D6T Z56755902 F5 fragment OCCOc1ccccc1O InChI=1S/C8H10O3/c9-5-6-11-8-4-2-1-3-7(8)10/h1-4,9-10H,5-6H2 AMCOCUDBDKVWRZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
D6T C1 S1 1
D6T C2 S1 1
D6T C3 S1 1
D6T C4 S1 1
D6T C10 S1 1
D6T C11 S1 1
D6T C12 S1 1
D6T C13 S1 1
D6T C14 S1 1
D6T C15 S1 1
D6T C16 S1 1
D6T C17 S1 1
D6T C18 S1 1
D6T C19 S1 1
D6T C20 S1 1
D6T C21 S1 1
D6T C22 S1 1
D6T C23 S1 1
D6T C24 S1 1
D6T C25 S1 1
D6T C26 S1 1
D6T C27 S1 1
D6T C28 S1 1
D6T C29 S1 1
D6T C30 S1 1
D6T C31 S1 1
D6T C32 S1 1
D6T C33 S1 1
D6T C34 S1 1
D6T C36 S1 1
D6T C37 S1 1
D6T C38 S1 1
D6T C39 S1 1
D6T C5 S1 1
D6T C6 S1 1
D6T N1 S1 1
D6T N2 S1 1
D6T N3 S1 1
D6T N4 S1 1
D6T N5 S1 1
D6T N6 S1 1
D6T O2 S1 1
D6T N1 F1 1
D6T C10 F1 1
D6T O2 F1 1
D6T C11 F1 1
D6T C1 F2 1
D6T C2 F2 1
D6T C3 F2 1
D6T C4 F2 1
D6T C5 F2 1
D6T C6 F2 1
D6T C12 F2 2
D6T C13 F2 2
D6T C39 F2 2
D6T C38 F2 2
D6T C37 F2 2
D6T C36 F2 2
D6T C18 F2 3
D6T C23 F2 3
D6T C22 F2 3
D6T C21 F2 3
D6T C20 F2 3
D6T C19 F2 3
D6T C27 F2 4
D6T C31 F2 4
D6T C32 F2 4
D6T C33 F2 4
D6T C34 F2 4
D6T C28 F2 4
D6T C11 F3 1
D6T C15 F3 1
D6T C14 F3 1
D6T C13 F3 1
D6T C12 F3 1
D6T N2 F3 1
D6T C38 F4 1
D6T C39 F4 1
D6T C13 F4 1
D6T C12 F4 1
D6T C36 F4 1
D6T C37 F4 1
D6T N2 F4 1
D6T C11 F4 1
D6T C15 F4 1
D6T C14 F4 1
D6T O5 F5 1
D6T C41 F5 1
D6T C40 F5 1
D6T O4 F5 1
D6T C32 F5 1
D6T C31 F5 1
D6T C27 F5 1
D6T C28 F5 1
D6T C34 F5 1
D6T C33 F5 1
D6T O3 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id D6T
_pdbe_chem_comp_rdkit_properties.exactmw 798.374
_pdbe_chem_comp_rdkit_properties.amw 798.941
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 23
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 59
_pdbe_chem_comp_rdkit_properties.NumAtoms 109
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.326
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 6
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 414.062
_pdbe_chem_comp_rdkit_properties.tpsa 139.160
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.418
_pdbe_chem_comp_rdkit_properties.CrippenMR 218.238
_pdbe_chem_comp_rdkit_properties.chi0v 28.541
_pdbe_chem_comp_rdkit_properties.chi1v 15.336
_pdbe_chem_comp_rdkit_properties.chi2v 6.630
_pdbe_chem_comp_rdkit_properties.chi3v 6.630
_pdbe_chem_comp_rdkit_properties.chi4v 4.171
_pdbe_chem_comp_rdkit_properties.chi0n 78.541
_pdbe_chem_comp_rdkit_properties.chi1n 40.283
_pdbe_chem_comp_rdkit_properties.chi2n 6.630
_pdbe_chem_comp_rdkit_properties.chi3n 6.630
_pdbe_chem_comp_rdkit_properties.chi4n 4.171
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.990
_pdbe_chem_comp_rdkit_properties.kappa1 12.067
_pdbe_chem_comp_rdkit_properties.kappa2 20.122
_pdbe_chem_comp_rdkit_properties.kappa3 10.555
_pdbe_chem_comp_rdkit_properties.Phi 4.115
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
D6T UniChem ChEMBL CHEMBL4790452
D6T UniChem PDBe D6T
D6T UniChem PubChem 132990906
D6T UniChem BRENDA 227441
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
D6T C1 -8.762 -3.559 -0.641 ETKDGv3 1
D6T C2 -9.232 -2.334 -0.337 ETKDGv3 2
D6T C3 -8.262 -1.196 -0.251 ETKDGv3 3
D6T C4 -6.970 -1.394 -0.559 ETKDGv3 4
D6T C10 -9.303 0.326 1.457 ETKDGv3 5
D6T C11 -9.839 1.660 1.805 ETKDGv3 6
D6T C12 -10.238 3.914 1.085 ETKDGv3 7
D6T C13 -10.854 4.211 2.396 ETKDGv3 8
D6T C14 -10.929 3.243 3.317 ETKDGv3 9
D6T C15 -10.397 1.899 3.009 ETKDGv3 10
D6T C16 -5.037 -2.975 -1.235 ETKDGv3 11
D6T C17 -4.075 -2.062 -1.311 ETKDGv3 12
D6T C18 -1.560 -2.222 -1.849 ETKDGv3 13
D6T C19 -0.540 -3.039 -2.169 ETKDGv3 14
D6T C20 0.819 -2.500 -2.378 ETKDGv3 15
D6T C21 1.058 -1.186 -2.234 ETKDGv3 16
D6T C22 -0.064 -0.279 -1.894 ETKDGv3 17
D6T C23 -1.297 -0.766 -1.709 ETKDGv3 18
D6T C24 2.431 -0.620 -2.479 ETKDGv3 19
D6T C25 2.595 -0.243 -3.965 ETKDGv3 20
D6T C26 5.102 -0.312 -3.818 ETKDGv3 21
D6T C27 5.529 0.176 -2.454 ETKDGv3 22
D6T C28 5.175 1.394 -1.993 ETKDGv3 23
D6T C29 4.230 2.297 -2.747 ETKDGv3 24
D6T C30 3.975 1.841 -4.188 ETKDGv3 25
D6T C31 6.430 -0.679 -1.647 ETKDGv3 26
D6T C32 6.876 -0.268 -0.444 ETKDGv3 27
D6T C33 6.454 1.050 0.080 ETKDGv3 28
D6T C34 5.648 1.835 -0.660 ETKDGv3 29
D6T C35 6.615 2.669 1.990 ETKDGv3 30
D6T C36 -10.163 4.987 0.082 ETKDGv3 31
D6T C37 -10.647 6.204 0.365 ETKDGv3 32
D6T C38 -11.266 6.505 1.680 ETKDGv3 33
D6T C39 -11.365 5.573 2.638 ETKDGv3 34
D6T C40 8.405 -2.241 -0.047 ETKDGv3 35
D6T C41 9.544 -1.929 -1.026 ETKDGv3 36
D6T C42 11.375 -1.220 0.222 ETKDGv3 37
D6T C43 11.930 -0.007 0.966 ETKDGv3 38
D6T C44 10.866 0.197 3.024 ETKDGv3 39
D6T C45 9.601 0.723 3.694 ETKDGv3 40
D6T C46 9.982 1.246 5.923 ETKDGv3 41
D6T C5 -6.467 -2.745 -0.916 ETKDGv3 42
D6T C6 -7.332 -3.773 -0.930 ETKDGv3 43
D6T C7 -10.695 -2.104 -0.178 ETKDGv3 44
D6T C8 -11.627 -3.157 0.363 ETKDGv3 45
D6T C9 -11.282 -3.519 1.804 ETKDGv3 46
D6T N1 -8.675 0.108 0.183 ETKDGv3 47
D6T N2 -9.775 2.724 0.833 ETKDGv3 48
D6T N3 -2.881 -2.754 -1.648 ETKDGv3 49
D6T N4 -3.235 -4.102 -1.757 ETKDGv3 50
D6T N5 -4.474 -4.259 -1.523 ETKDGv3 51
D6T N6 3.897 0.375 -4.315 ETKDGv3 52
D6T O1 -11.182 -0.989 -0.509 ETKDGv3 53
D6T O2 -9.386 -0.623 2.284 ETKDGv3 54
D6T O3 6.922 1.435 1.347 ETKDGv3 55
D6T O4 7.729 -1.048 0.356 ETKDGv3 56
D6T O5 10.290 -0.811 -0.586 ETKDGv3 57
D6T O6 10.899 0.644 1.685 ETKDGv3 58
D6T O7 9.521 0.257 5.028 ETKDGv3 59
D6T H1 -9.423 -4.409 -0.734 ETKDGv3 60
D6T H2 -6.284 -0.560 -0.492 ETKDGv3 61
D6T H3 -11.375 3.431 4.286 ETKDGv3 62
D6T H4 -10.466 1.125 3.762 ETKDGv3 63
D6T H5 -4.168 -0.997 -1.156 ETKDGv3 64
D6T H6 -0.697 -4.104 -2.283 ETKDGv3 65
D6T H7 1.618 -3.179 -2.650 ETKDGv3 66
D6T H8 0.112 0.786 -1.795 ETKDGv3 67
D6T H9 -2.095 -0.081 -1.461 ETKDGv3 68
D6T H10 3.194 -1.369 -2.179 ETKDGv3 69
D6T H11 2.566 0.266 -1.830 ETKDGv3 70
D6T H12 2.480 -1.166 -4.573 ETKDGv3 71
D6T H13 1.763 0.431 -4.267 ETKDGv3 72
D6T H14 5.936 -0.124 -4.527 ETKDGv3 73
D6T H15 3.267 2.359 -2.201 ETKDGv3 74
D6T H16 3.050 2.320 -4.577 ETKDGv3 75
D6T H17 6.710 -1.643 -2.046 ETKDGv3 76
D6T H18 5.328 2.802 -0.296 ETKDGv3 77
D6T H19 5.519 2.755 2.146 ETKDGv3 78
D6T H20 7.116 2.697 2.979 ETKDGv3 79
D6T H21 6.984 3.519 1.380 ETKDGv3 80
D6T H22 -9.717 4.795 -0.886 ETKDGv3 81
D6T H23 -10.588 6.987 -0.379 ETKDGv3 82
D6T H24 -11.644 7.502 1.865 ETKDGv3 83
D6T H25 -11.823 5.826 3.587 ETKDGv3 84
D6T H26 7.693 -2.970 -0.487 ETKDGv3 85
D6T H27 8.831 -2.718 0.860 ETKDGv3 86
D6T H28 10.169 -2.838 -1.191 ETKDGv3 87
D6T H29 9.108 -1.675 -2.014 ETKDGv3 88
D6T H30 12.180 -1.646 -0.417 ETKDGv3 89
D6T H31 11.073 -1.985 0.973 ETKDGv3 90
D6T H32 12.796 -0.309 1.602 ETKDGv3 91
D6T H33 12.329 0.709 0.216 ETKDGv3 92
D6T H34 10.852 -0.916 3.083 ETKDGv3 93
D6T H35 11.755 0.582 3.572 ETKDGv3 94
D6T H36 9.551 1.835 3.600 ETKDGv3 95
D6T H37 8.724 0.322 3.142 ETKDGv3 96
D6T H38 9.991 0.820 6.947 ETKDGv3 97
D6T H39 9.299 2.123 5.927 ETKDGv3 98
D6T H40 11.021 1.564 5.681 ETKDGv3 99
D6T H41 -7.004 -4.774 -1.178 ETKDGv3 100
D6T H42 -12.672 -2.777 0.338 ETKDGv3 101
D6T H43 -11.601 -4.065 -0.275 ETKDGv3 102
D6T H44 -11.353 -2.621 2.453 ETKDGv3 103
D6T H45 -11.997 -4.283 2.176 ETKDGv3 104
D6T H46 -10.255 -3.938 1.868 ETKDGv3 105
D6T H47 -8.346 0.935 -0.365 ETKDGv3 106
D6T H48 4.941 -1.412 -3.804 ETKDGv3 107
D6T H49 4.652 3.325 -2.771 ETKDGv3 108
D6T H50 4.808 2.205 -4.828 ETKDGv3 109
#