data_D94
#
_chem_comp.id D94
_chem_comp.name 3-[cis-3-(4-methylpiperazin-1-yl)cyclobutyl]-1-(2-phenylquinolin-7-yl)imidazo[1,5-a]pyrazin-8-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H31 N7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-05-27
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 489.614
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code D94
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3D94
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D94 N5 N5 N 0 1 N N N N N N 25.415 13.589 -7.641 2.193 3.038 -0.511 N5 D94 1
D94 C3 C3 C 0 1 Y N N N N N 24.594 13.578 -6.531 0.902 3.444 -0.219 C3 D94 2
D94 C4 C4 C 0 1 Y N N N N N 24.225 14.816 -5.837 -0.163 2.520 -0.268 C4 D94 3
D94 N2 N2 N 0 1 Y N N N N N 23.406 14.728 -4.715 -1.441 2.950 0.028 N2 D94 4
D94 C2 C2 C 0 1 Y N N N N N 22.951 13.486 -4.271 -1.634 4.271 0.363 C2 D94 5
D94 C1 C1 C 0 1 Y N N N N N 23.336 12.393 -4.964 -0.584 5.112 0.396 C1 D94 6
D94 N1 N1 N 0 1 Y N N N N N 24.154 12.417 -6.079 0.657 4.698 0.114 N1 D94 7
D94 C5 C5 C 0 1 Y N N N N N 23.195 16.001 -4.249 -2.257 1.887 -0.093 C5 D94 8
D94 C22 C22 C 0 1 N N N N N N 22.350 16.344 -3.023 -3.746 1.905 0.140 C22 D94 9
D94 C23 C23 C 0 1 N N N N N N 22.147 17.834 -2.635 -4.206 0.953 1.258 C23 D94 10
D94 C24 C24 C 0 1 N N N N N N 22.121 17.282 -1.184 -5.410 0.612 0.363 C24 D94 11
D94 N6 N6 N 0 1 N N N N N N 22.432 18.269 -0.101 -5.768 -0.813 0.378 N6 D94 12
D94 C26 C26 C 0 1 N N N N N N 22.275 19.702 -0.415 -6.708 -1.131 -0.706 C26 D94 13
D94 C27 C27 C 0 1 N N N N N N 22.326 20.586 0.830 -6.994 -2.634 -0.705 C27 D94 14
D94 N7 N7 N 0 1 N N N N N N 23.613 20.325 1.580 -7.548 -3.024 0.599 N7 D94 15
D94 C30 C30 C 0 1 N N N N N N 23.691 21.188 2.811 -7.907 -4.448 0.615 C30 D94 16
D94 C28 C28 C 0 1 N N N N N N 23.858 18.854 1.862 -6.608 -2.706 1.684 C28 D94 17
D94 C29 C29 C 0 1 N N N N N N 23.706 17.994 0.601 -6.322 -1.202 1.683 C29 D94 18
D94 C25 C25 C 0 1 N N N N N N 23.181 16.291 -1.708 -4.533 1.013 -0.835 C25 D94 19
D94 N3 N3 N 0 1 Y N N N N N 23.833 16.885 -5.001 -1.563 0.835 -0.443 N3 D94 20
D94 C6 C6 C 0 1 Y N N N N N 24.462 16.172 -6.001 -0.267 1.166 -0.565 C6 D94 21
D94 C7 C7 C 0 1 Y N N N N N 25.338 16.894 -6.897 0.840 0.262 -0.945 C7 D94 22
D94 C8 C8 C 0 1 Y N N N N N 25.030 18.143 -7.476 2.022 0.283 -0.224 C8 D94 23
D94 C12 C12 C 0 1 Y N N N N N 25.967 18.833 -8.267 3.070 -0.577 -0.587 C12 D94 24
D94 C11 C11 C 0 1 Y N N N N N 27.275 18.273 -8.415 2.897 -1.453 -1.689 C11 D94 25
D94 C9 C9 C 0 1 Y N N N N N 27.615 17.050 -7.786 1.685 -1.451 -2.402 C9 D94 26
D94 C10 C10 C 0 1 Y N N N N N 26.647 16.401 -7.017 0.681 -0.616 -2.032 C10 D94 27
D94 N4 N4 N 0 1 Y N N N N N 25.611 20.004 -8.858 4.221 -0.577 0.091 N4 D94 28
D94 C13 C13 C 0 1 Y N N N N N 26.546 20.681 -9.607 5.213 -1.382 -0.243 C13 D94 29
D94 C14 C14 C 0 1 Y N N N N N 27.840 20.177 -9.796 5.102 -2.270 -1.323 C14 D94 30
D94 C15 C15 C 0 1 Y N N N N N 28.204 18.968 -9.198 3.950 -2.315 -2.051 C15 D94 31
D94 C16 C16 C 0 1 Y N N N N N 26.090 21.933 -10.257 6.471 -1.345 0.540 C16 D94 32
D94 C17 C17 C 0 1 Y N N N N N 26.858 23.111 -10.304 6.601 -0.468 1.616 C17 D94 33
D94 C18 C18 C 0 1 Y N N N N N 26.390 24.254 -10.963 7.774 -0.439 2.341 C18 D94 34
D94 C19 C19 C 0 1 Y N N N N N 25.141 24.241 -11.594 8.822 -1.276 2.002 C19 D94 35
D94 C20 C20 C 0 1 Y N N N N N 24.363 23.095 -11.562 8.699 -2.148 0.935 C20 D94 36
D94 C21 C21 C 0 1 Y N N N N N 24.843 21.957 -10.918 7.528 -2.191 0.206 C21 D94 37
D94 HN5 HN5 H 0 1 N N N N N N 24.856 13.592 -8.470 2.949 3.555 -0.189 HN5 D94 38
D94 HN5A HN5A H 0 0 N N N N N N 25.988 14.408 -7.623 2.342 2.235 -1.034 HN5A D94 39
D94 H2 H2 H 0 1 N N N N N N 22.313 13.402 -3.403 -2.624 4.631 0.598 H2 D94 40
D94 H1 H1 H 0 1 N N N N N N 22.980 11.432 -4.624 -0.747 6.147 0.660 H1 D94 41
D94 H22 H22 H 0 1 N N N N N N 21.489 15.713 -3.286 -4.148 2.914 0.233 H22 D94 42
D94 H23 H23 H 0 1 N N N N N N 22.917 18.568 -2.914 -3.531 0.113 1.421 H23 D94 43
D94 H23A H23A H 0 0 N N N N N N 21.352 18.466 -3.056 -4.479 1.464 2.181 H23A D94 44
D94 H24 H24 H 0 1 N N N N N N 21.232 16.919 -0.647 -6.268 1.266 0.517 H24 D94 45
D94 H26 H26 H 0 1 N N N N N N 23.092 20.002 -1.088 -7.638 -0.583 -0.553 H26 D94 46
D94 H26A H26A H 0 0 N N N N N N 21.287 19.836 -0.880 -6.270 -0.845 -1.662 H26A D94 47
D94 H27 H27 H 0 1 N N N N N N 22.284 21.644 0.531 -7.713 -2.868 -1.490 H27 D94 48
D94 H27A H27A H 0 0 N N N N N N 21.469 20.355 1.480 -6.068 -3.181 -0.885 H27A D94 49
D94 H30 H30 H 0 1 N N N N N N 23.710 20.549 3.706 -7.018 -5.049 0.419 H30 D94 50
D94 H30A H30A H 0 0 N N N N N N 24.607 21.796 2.775 -8.314 -4.710 1.591 H30A D94 51
D94 H30B H30B H 0 0 N N N N N N 22.813 21.849 2.851 -8.654 -4.643 -0.155 H30B D94 52
D94 H28 H28 H 0 1 N N N N N N 24.882 18.736 2.247 -7.046 -2.992 2.640 H28 D94 53
D94 H28A H28A H 0 0 N N N N N N 23.111 18.518 2.596 -5.678 -3.253 1.531 H28A D94 54
D94 H29 H29 H 0 1 N N N N N N 23.726 16.934 0.893 -5.603 -0.968 2.468 H29 D94 55
D94 H29A H29A H 0 0 N N N N N N 24.534 18.236 -0.082 -7.248 -0.656 1.862 H29A D94 56
D94 H25 H25 H 0 1 N N N N N N 23.307 15.326 -1.196 -5.070 1.573 -1.601 H25 D94 57
D94 H25A H25A H 0 0 N N N N N N 24.263 16.488 -1.669 -3.947 0.190 -1.243 H25A D94 58
D94 H8 H8 H 0 1 N N N N N N 24.056 18.578 -7.309 2.136 0.957 0.613 H8 D94 59
D94 H9 H9 H 0 1 N N N N N N 28.603 16.628 -7.899 1.552 -2.118 -3.242 H9 D94 60
D94 H10 H10 H 0 1 N N N N N N 26.913 15.492 -6.499 -0.248 -0.620 -2.584 H10 D94 61
D94 H14 H14 H 0 1 N N N N N N 28.552 20.720 -10.400 5.928 -2.919 -1.576 H14 D94 62
D94 H15 H15 H 0 1 N N N N N N 29.198 18.571 -9.339 3.848 -2.993 -2.885 H15 D94 63
D94 H17 H17 H 0 1 N N N N N N 27.825 23.134 -9.824 5.784 0.187 1.882 H17 D94 64
D94 H18 H18 H 0 1 N N N N N N 26.995 25.149 -10.984 7.876 0.240 3.175 H18 D94 65
D94 H19 H19 H 0 1 N N N N N N 24.784 25.123 -12.105 9.738 -1.249 2.572 H19 D94 66
D94 H20 H20 H 0 1 N N N N N N 23.391 23.084 -12.033 9.520 -2.800 0.675 H20 D94 67
D94 H21 H21 H 0 1 N N N N N N 24.240 21.061 -10.925 7.433 -2.872 -0.626 H21 D94 68
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D94 N5 C3 SING N N 1
D94 N5 HN5 SING N N 2
D94 N5 HN5A SING N N 3
D94 C3 N1 DOUB Y N 4
D94 C3 C4 SING Y N 5
D94 C6 C4 DOUB Y N 6
D94 C4 N2 SING Y N 7
D94 N2 C2 SING Y N 8
D94 N2 C5 SING Y N 9
D94 C1 C2 DOUB Y N 10
D94 C2 H2 SING N N 11
D94 N1 C1 SING Y N 12
D94 C1 H1 SING N N 13
D94 N3 C5 DOUB Y N 14
D94 C5 C22 SING N N 15
D94 C22 C23 SING N N 16
D94 C22 C25 SING N N 17
D94 C22 H22 SING N N 18
D94 C23 C24 SING N N 19
D94 C23 H23 SING N N 20
D94 C23 H23A SING N N 21
D94 C25 C24 SING N N 22
D94 C24 N6 SING N N 23
D94 C24 H24 SING N N 24
D94 C26 N6 SING N N 25
D94 N6 C29 SING N N 26
D94 C26 C27 SING N N 27
D94 C26 H26 SING N N 28
D94 C26 H26A SING N N 29
D94 C27 N7 SING N N 30
D94 C27 H27 SING N N 31
D94 C27 H27A SING N N 32
D94 N7 C28 SING N N 33
D94 N7 C30 SING N N 34
D94 C30 H30 SING N N 35
D94 C30 H30A SING N N 36
D94 C30 H30B SING N N 37
D94 C29 C28 SING N N 38
D94 C28 H28 SING N N 39
D94 C28 H28A SING N N 40
D94 C29 H29 SING N N 41
D94 C29 H29A SING N N 42
D94 C25 H25 SING N N 43
D94 C25 H25A SING N N 44
D94 C6 N3 SING Y N 45
D94 C7 C6 SING Y N 46
D94 C8 C7 DOUB Y N 47
D94 C10 C7 SING Y N 48
D94 C12 C8 SING Y N 49
D94 C8 H8 SING N N 50
D94 N4 C12 DOUB Y N 51
D94 C11 C12 SING Y N 52
D94 C15 C11 DOUB Y N 53
D94 C11 C9 SING Y N 54
D94 C9 C10 DOUB Y N 55
D94 C9 H9 SING N N 56
D94 C10 H10 SING N N 57
D94 C13 N4 SING Y N 58
D94 C16 C13 SING Y N 59
D94 C14 C13 DOUB Y N 60
D94 C14 C15 SING Y N 61
D94 C14 H14 SING N N 62
D94 C15 H15 SING N N 63
D94 C21 C16 DOUB Y N 64
D94 C17 C16 SING Y N 65
D94 C18 C17 DOUB Y N 66
D94 C17 H17 SING N N 67
D94 C19 C18 SING Y N 68
D94 C18 H18 SING N N 69
D94 C19 C20 DOUB Y N 70
D94 C19 H19 SING N N 71
D94 C20 C21 SING Y N 72
D94 C20 H20 SING N N 73
D94 C21 H21 SING N N 74
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D94 SMILES ACDLabs 10.04 n2c1cc(ccc1ccc2c3ccccc3)c5nc(n4ccnc(N)c45)C7CC(N6CCN(CC6)C)C7
D94 SMILES_CANONICAL CACTVS 3.341 CN1CCN(CC1)[C@H]2C[C@H](C2)c3nc(c4ccc5ccc(nc5c4)c6ccccc6)c7n3ccnc7N
D94 SMILES CACTVS 3.341 CN1CCN(CC1)[CH]2C[CH](C2)c3nc(c4ccc5ccc(nc5c4)c6ccccc6)c7n3ccnc7N
D94 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CN1CCN(CC1)C2CC(C2)c3nc(c4n3ccnc4N)c5ccc6ccc(nc6c5)c7ccccc7
D94 SMILES "OpenEye OEToolkits" 1.5.0 CN1CCN(CC1)C2CC(C2)c3nc(c4n3ccnc4N)c5ccc6ccc(nc6c5)c7ccccc7
D94 InChI InChI 1.03 InChI=1S/C30H31N7/c1-35-13-15-36(16-14-35)24-17-23(18-24)30-34-27(28-29(31)32-11-12-37(28)30)22-8-7-21-9-10-25(33-26(21)19-22)20-5-3-2-4-6-20/h2-12,19,23-24H,13-18H2,1H3,(H2,31,32)/t23-,24+
D94 InChIKey InChI 1.03 PDJARQSWGDDFHH-PSWAGMNNSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
D94 "SYSTEMATIC NAME" ACDLabs 10.04 3-[cis-3-(4-methylpiperazin-1-yl)cyclobutyl]-1-(2-phenylquinolin-7-yl)imidazo[1,5-a]pyrazin-8-amine
D94 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 3-[3-(4-methylpiperazin-1-yl)cyclobutyl]-1-(2-phenylquinolin-7-yl)imidazo[5,1-c]pyrazin-8-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D94 'Create component' 2008-05-27 RCSB
D94 'Modify aromatic_flag' 2011-06-04 RCSB
D94 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
D94 N5 N 2.238 2.059 1
D94 C3 C 0.771 2.374 2
D94 C4 C -0.235 1.262 3
D94 N2 N -1.701 1.577 4
D94 C2 C -2.162 3.005 5
D94 C1 C -1.156 4.117 6
D94 N1 N 0.311 3.802 7
D94 C5 C -2.454 0.280 8
D94 C22 C -3.946 0.126 9
D94 C23 C -4.893 -1.038 10
D94 C24 C -6.057 -0.091 11
D94 N6 N -7.549 -0.245 12
D94 C26 C -8.162 -1.614 13
D94 C27 C -9.654 -1.767 14
D94 N7 N -10.533 -0.552 15
D94 C30 C -12.025 -0.705 16
D94 C28 C -9.920 0.817 17
D94 C29 C -8.428 0.971 18
D94 C25 C -5.110 1.073 19
D94 N3 N -1.453 -0.837 20
D94 C6 C -0.081 -0.230 21
D94 C7 C 1.216 -0.983 22
D94 C8 C 2.517 -0.236 23
D94 C12 C 3.814 -0.989 24
D94 C11 C 3.811 -2.488 25
D94 C9 C 2.510 -3.236 26
D94 C10 C 1.213 -2.483 27
D94 N4 N 5.115 -0.241 28
D94 C13 C 6.412 -0.994 29
D94 C14 C 6.409 -2.494 30
D94 C15 C 5.108 -3.241 31
D94 C16 C 7.713 -0.247 32
D94 C17 C 9.010 -1.000 33
D94 C18 C 10.311 -0.252 34
D94 C19 C 10.314 1.247 35
D94 C20 C 9.016 2.000 36
D94 C21 C 7.716 1.253 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
D94 N5 C3 SINGLE NONE 1
D94 C3 N1 DOUBLE NONE 2
D94 C3 C4 SINGLE NONE 3
D94 C6 C4 DOUBLE NONE 4
D94 C4 N2 SINGLE NONE 5
D94 N2 C2 SINGLE NONE 6
D94 N2 C5 SINGLE NONE 7
D94 C1 C2 DOUBLE NONE 8
D94 N1 C1 SINGLE NONE 9
D94 N3 C5 DOUBLE NONE 10
D94 C22 C5 SINGLE BEGINDASH 11
D94 C22 C23 SINGLE NONE 12
D94 C22 C25 SINGLE NONE 13
D94 C23 C24 SINGLE NONE 14
D94 C25 C24 SINGLE NONE 15
D94 C24 N6 SINGLE BEGINDASH 16
D94 C26 N6 SINGLE NONE 17
D94 N6 C29 SINGLE NONE 18
D94 C26 C27 SINGLE NONE 19
D94 C27 N7 SINGLE NONE 20
D94 N7 C28 SINGLE NONE 21
D94 N7 C30 SINGLE NONE 22
D94 C29 C28 SINGLE NONE 23
D94 C6 N3 SINGLE NONE 24
D94 C7 C6 SINGLE NONE 25
D94 C8 C7 DOUBLE NONE 26
D94 C10 C7 SINGLE NONE 27
D94 C12 C8 SINGLE NONE 28
D94 N4 C12 DOUBLE NONE 29
D94 C11 C12 SINGLE NONE 30
D94 C15 C11 DOUBLE NONE 31
D94 C11 C9 SINGLE NONE 32
D94 C9 C10 DOUBLE NONE 33
D94 C13 N4 SINGLE NONE 34
D94 C16 C13 SINGLE NONE 35
D94 C14 C13 DOUBLE NONE 36
D94 C14 C15 SINGLE NONE 37
D94 C21 C16 SINGLE NONE 38
D94 C17 C16 DOUBLE NONE 39
D94 C18 C17 SINGLE NONE 40
D94 C19 C18 DOUBLE NONE 41
D94 C19 C20 SINGLE NONE 42
D94 C20 C21 DOUBLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
D94 MurckoScaffold S1 scaffold 'c1ccc(-c2ccc3ccc(-c4nc([C@H]5C[C@@H](N6CCNCC6)C5)n5ccncc45)cc3n2)cc1' InChI=1S/C29H28N6/c1-2-4-20(5-3-1)25-9-8-21-6-7-22(18-26(21)32-25)28-27-19-31-12-15-35(27)29(33-28)23-16-24(17-23)34-13-10-30-11-14-34/h1-9,12,15,18-19,23-24,30H,10-11,13-14,16-17H2/t23-,24+ XDJNNJGKLYGPMF-PSWAGMNNSA-N
D94 cyclobutane F1 fragment C1CCC1 InChI=1S/C4H8/c1-2-4-3-1/h1-4H2 PMPVIKIVABFJJI-UHFFFAOYSA-N
D94 imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
D94 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
D94 piperazine F4 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
D94 pyrazine F5 fragment c1cnccn1 InChI=1S/C4H4N2/c1-2-6-4-3-5-1/h1-4H KYQCOXFCLRTKLS-UHFFFAOYSA-N
D94 pyridine F6 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
D94 quinoline F7 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
D94 C3 S1 1
D94 C4 S1 1
D94 N2 S1 1
D94 C2 S1 1
D94 C1 S1 1
D94 N1 S1 1
D94 C5 S1 1
D94 C22 S1 1
D94 C23 S1 1
D94 C24 S1 1
D94 N6 S1 1
D94 C26 S1 1
D94 C27 S1 1
D94 N7 S1 1
D94 C28 S1 1
D94 C29 S1 1
D94 C25 S1 1
D94 N3 S1 1
D94 C6 S1 1
D94 C7 S1 1
D94 C8 S1 1
D94 C12 S1 1
D94 C11 S1 1
D94 C9 S1 1
D94 C10 S1 1
D94 N4 S1 1
D94 C13 S1 1
D94 C14 S1 1
D94 C15 S1 1
D94 C16 S1 1
D94 C17 S1 1
D94 C18 S1 1
D94 C19 S1 1
D94 C20 S1 1
D94 C21 S1 1
D94 C22 F1 1
D94 C23 F1 1
D94 C24 F1 1
D94 C25 F1 1
D94 C4 F2 1
D94 C6 F2 1
D94 N3 F2 1
D94 C5 F2 1
D94 N2 F2 1
D94 C7 F3 1
D94 C8 F3 1
D94 C12 F3 1
D94 C11 F3 1
D94 C9 F3 1
D94 C10 F3 1
D94 C16 F3 2
D94 C21 F3 2
D94 C20 F3 2
D94 C19 F3 2
D94 C18 F3 2
D94 C17 F3 2
D94 N6 F4 1
D94 C26 F4 1
D94 C27 F4 1
D94 N7 F4 1
D94 C28 F4 1
D94 C29 F4 1
D94 C3 F5 1
D94 C4 F5 1
D94 N2 F5 1
D94 C2 F5 1
D94 C1 F5 1
D94 N1 F5 1
D94 C12 F6 1
D94 C11 F6 1
D94 C15 F6 1
D94 C14 F6 1
D94 C13 F6 1
D94 N4 F6 1
D94 C10 F7 1
D94 C9 F7 1
D94 C11 F7 1
D94 C12 F7 1
D94 C8 F7 1
D94 C7 F7 1
D94 N4 F7 1
D94 C13 F7 1
D94 C14 F7 1
D94 C15 F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id D94
_pdbe_chem_comp_rdkit_properties.exactmw 489.264
_pdbe_chem_comp_rdkit_properties.amw 489.627
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 68
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.300
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 259.807
_pdbe_chem_comp_rdkit_properties.tpsa 75.580
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.849
_pdbe_chem_comp_rdkit_properties.CrippenMR 141.362
_pdbe_chem_comp_rdkit_properties.chi0v 18.130
_pdbe_chem_comp_rdkit_properties.chi1v 10.328
_pdbe_chem_comp_rdkit_properties.chi2v 5.190
_pdbe_chem_comp_rdkit_properties.chi3v 5.190
_pdbe_chem_comp_rdkit_properties.chi4v 3.524
_pdbe_chem_comp_rdkit_properties.chi0n 49.130
_pdbe_chem_comp_rdkit_properties.chi1n 25.722
_pdbe_chem_comp_rdkit_properties.chi2n 5.190
_pdbe_chem_comp_rdkit_properties.chi3n 5.190
_pdbe_chem_comp_rdkit_properties.chi4n 3.524
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.810
_pdbe_chem_comp_rdkit_properties.kappa1 6.981
_pdbe_chem_comp_rdkit_properties.kappa2 8.938
_pdbe_chem_comp_rdkit_properties.kappa3 3.949
_pdbe_chem_comp_rdkit_properties.Phi 1.686
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
D94 UniChem ChEMBL CHEMBL249295
D94 UniChem PDBe D94
D94 UniChem 'PubChem DOTF' 136350011
D94 UniChem ChEBI 90536
D94 UniChem SureChEMBL SCHEMBL1315173
D94 UniChem 'PubChem TPHARMA' 46390483
D94 UniChem BindingDb 50219382
D94 UniChem Nikkaji J2.626.256I
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
D94 N5 -1.923 0.469 -4.628 ETKDGv3 1
D94 C3 -0.638 -0.142 -4.504 ETKDGv3 2
D94 C4 -0.080 -0.552 -3.200 ETKDGv3 3
D94 N2 1.290 -0.863 -3.134 ETKDGv3 4
D94 C2 2.057 -1.067 -4.322 ETKDGv3 5
D94 C1 1.484 -0.769 -5.500 ETKDGv3 6
D94 N1 0.129 -0.259 -5.556 ETKDGv3 7
D94 C5 1.471 -1.337 -1.806 ETKDGv3 8
D94 C22 2.766 -1.906 -1.282 ETKDGv3 9
D94 C23 2.957 -1.784 0.230 ETKDGv3 10
D94 C24 4.211 -0.929 0.013 ETKDGv3 11
D94 N6 4.094 0.440 0.575 ETKDGv3 12
D94 C26 4.034 0.448 2.054 ETKDGv3 13
D94 C27 5.393 0.131 2.707 ETKDGv3 14
D94 N7 6.476 1.005 2.217 ETKDGv3 15
D94 C30 6.420 2.355 2.805 ETKDGv3 16
D94 C28 6.533 1.034 0.744 ETKDGv3 17
D94 C29 5.167 1.345 0.104 ETKDGv3 18
D94 C25 3.966 -0.989 -1.499 ETKDGv3 19
D94 N3 0.361 -1.343 -1.132 ETKDGv3 20
D94 C6 -0.641 -0.839 -2.026 ETKDGv3 21
D94 C7 -2.077 -0.874 -1.697 ETKDGv3 22
D94 C8 -2.500 -0.330 -0.542 ETKDGv3 23
D94 C12 -3.924 -0.382 -0.176 ETKDGv3 24
D94 C11 -4.867 -1.065 -1.084 ETKDGv3 25
D94 C9 -4.335 -1.675 -2.315 ETKDGv3 26
D94 C10 -3.028 -1.590 -2.595 ETKDGv3 27
D94 N4 -4.353 0.163 0.926 ETKDGv3 28
D94 C13 -5.745 0.129 1.304 ETKDGv3 29
D94 C14 -6.628 -0.500 0.499 ETKDGv3 30
D94 C15 -6.163 -1.122 -0.757 ETKDGv3 31
D94 C16 -6.152 0.760 2.585 ETKDGv3 32
D94 C17 -7.382 1.286 2.767 ETKDGv3 33
D94 C18 -7.742 1.923 4.052 ETKDGv3 34
D94 C19 -6.846 1.993 5.042 ETKDGv3 35
D94 C20 -5.493 1.436 4.852 ETKDGv3 36
D94 C21 -5.162 0.855 3.692 ETKDGv3 37
D94 HN5 -2.307 0.694 -5.573 ETKDGv3 38
D94 HN5A -2.444 0.807 -3.790 ETKDGv3 39
D94 H2 3.066 -1.456 -4.275 ETKDGv3 40
D94 H1 2.042 -0.901 -6.417 ETKDGv3 41
D94 H22 2.951 -2.939 -1.650 ETKDGv3 42
D94 H23 3.192 -2.761 0.705 ETKDGv3 43
D94 H23A 2.129 -1.242 0.736 ETKDGv3 44
D94 H24 5.140 -1.462 0.310 ETKDGv3 45
D94 H26 3.283 -0.278 2.429 ETKDGv3 46
D94 H26A 3.679 1.443 2.396 ETKDGv3 47
D94 H27 5.665 -0.927 2.510 ETKDGv3 48
D94 H27A 5.296 0.219 3.812 ETKDGv3 49
D94 H30 6.466 2.289 3.913 ETKDGv3 50
D94 H30A 7.299 2.949 2.477 ETKDGv3 51
D94 H30B 5.495 2.896 2.518 ETKDGv3 52
D94 H28 6.903 0.053 0.377 ETKDGv3 53
D94 H28A 7.277 1.786 0.401 ETKDGv3 54
D94 H29 4.880 2.394 0.329 ETKDGv3 55
D94 H29A 5.274 1.299 -1.000 ETKDGv3 56
D94 H25 4.794 -1.497 -2.040 ETKDGv3 57
D94 H25A 3.686 -0.010 -1.947 ETKDGv3 58
D94 H8 -1.800 0.164 0.122 ETKDGv3 59
D94 H9 -4.995 -2.202 -2.993 ETKDGv3 60
D94 H10 -2.655 -2.063 -3.495 ETKDGv3 61
D94 H14 -7.673 -0.588 0.762 ETKDGv3 62
D94 H15 -6.876 -1.625 -1.400 ETKDGv3 63
D94 H17 -8.120 1.281 1.977 ETKDGv3 64
D94 H18 -8.733 2.337 4.187 ETKDGv3 65
D94 H19 -7.109 2.461 5.982 ETKDGv3 66
D94 H20 -4.769 1.497 5.655 ETKDGv3 67
D94 H21 -4.167 0.446 3.571 ETKDGv3 68
#