data_DAU
#
_chem_comp.id DAU
_chem_comp.name "2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H26 N2 O16 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-11-16
_chem_comp.pdbx_modified_date 2012-05-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 564.329
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DAU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1G1L
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DAU O6 O6 O 0 1 N N N N N N 47.805 16.783 19.152 -3.106 2.914 2.683 O6 DAU 1
DAU C6 C6 C 0 1 N N N N N N 48.107 16.991 20.534 -3.867 3.428 1.588 C6 DAU 2
DAU C5 C5 C 0 1 N N R N N N 47.813 18.385 21.062 -4.089 2.321 0.556 C5 DAU 3
DAU O5 O5 O 0 1 N N N N N N 46.425 18.650 20.987 -4.898 1.291 1.128 O5 DAU 4
DAU C4 C4 C 0 1 N N S N N N 48.326 18.480 22.512 -4.796 2.901 -0.672 C4 DAU 5
DAU O4 O4 O 0 1 N N N N N N 49.769 18.450 22.548 -3.963 3.890 -1.280 O4 DAU 6
DAU C3 C3 C 0 1 N N S N N N 47.837 19.754 23.161 -5.068 1.775 -1.674 C3 DAU 7
DAU O3 O3 O 0 1 N N N N N N 48.179 19.731 24.529 -5.793 2.294 -2.791 O3 DAU 8
DAU C2 C2 C 0 1 N N R N N N 46.362 19.912 23.036 -5.896 0.684 -0.988 C2 DAU 9
DAU O2 O2 O 0 1 N N N N N N 45.956 21.146 23.573 -6.094 -0.405 -1.892 O2 DAU 10
DAU C1 C1 C 0 1 N N R N N N 45.928 19.796 21.581 -5.146 0.190 0.252 C1 DAU 11
DAU O1 O1 O 0 1 N N N N N N 46.500 20.867 20.851 -3.904 -0.394 -0.144 O1 DAU 12
DAU P2 P2 P 0 1 N N N N N N 45.813 21.446 19.521 -3.194 -1.584 0.675 P2 DAU 13
DAU O3P O3P O 0 1 N N N N N N 44.286 21.602 19.953 -3.015 -1.174 2.086 O3P DAU 14
DAU O4P O4P O 0 1 N N N N N N 46.622 22.673 18.957 -4.115 -2.903 0.613 O4P DAU 15
DAU OPP OPP O 0 1 N N N N N N 45.566 20.364 18.427 -1.757 -1.902 0.023 OPP DAU 16
DAU P P P 0 1 N N N N N N 44.235 20.603 17.491 -0.461 -2.721 0.515 P DAU 17
DAU O1P O1P O 0 1 N N N N N N 43.798 22.126 17.528 -0.227 -2.456 1.952 O1P DAU 18
DAU O2P O2P O 0 1 N N N N N N 44.786 19.749 16.252 -0.705 -4.297 0.293 O2P DAU 19
DAU "O5'" "O5'" O 0 1 N N N N N N 42.924 19.924 18.176 0.825 -2.253 -0.333 "O5'" DAU 20
DAU "C5'" "C5'" C 0 1 N N N N N N 42.973 18.560 18.544 2.148 -2.719 -0.062 "C5'" DAU 21
DAU "C4'" "C4'" C 0 1 N N R N N N 41.748 17.844 18.033 3.126 -2.079 -1.050 "C4'" DAU 22
DAU "O4'" "O4'" O 0 1 N N N N N N 40.585 18.231 18.751 3.216 -0.655 -0.826 "O4'" DAU 23
DAU "C3'" "C3'" C 0 1 N N S N N N 41.472 18.145 16.576 4.570 -2.578 -0.788 "C3'" DAU 24
DAU "O3'" "O3'" O 0 1 N N N N N N 40.918 16.932 16.011 4.822 -3.800 -1.484 "O3'" DAU 25
DAU "C2'" "C2'" C 0 1 N N N N N N 40.530 19.310 16.744 5.422 -1.424 -1.371 "C2'" DAU 26
DAU "C1'" "C1'" C 0 1 N N R N N N 39.634 18.880 17.893 4.462 -0.219 -1.393 "C1'" DAU 27
DAU N11 N11 N 0 1 N N N N N N 38.990 19.885 18.768 5.018 0.875 -0.593 N11 DAU 28
DAU C61 C61 C 0 1 N N N N N N 39.700 20.926 19.249 5.361 2.052 -1.200 C61 DAU 29
DAU C51 C51 C 0 1 N N N N N N 39.096 21.833 20.102 5.873 3.061 -0.462 C51 DAU 30
DAU C5A C5A C 0 1 N N N N N N 39.892 23.008 20.676 6.256 4.365 -1.113 C5A DAU 31
DAU C21 C21 C 0 1 N N N N N N 37.690 19.754 19.133 5.181 0.715 0.733 C21 DAU 32
DAU O21 O21 O 0 1 N N N N N N 36.971 18.766 18.681 4.865 -0.338 1.253 O21 DAU 33
DAU N31 N31 N 0 1 N N N N N N 37.090 20.611 19.985 5.688 1.704 1.492 N31 DAU 34
DAU C41 C41 C 0 1 N N N N N N 37.783 21.635 20.467 6.044 2.877 0.931 C41 DAU 35
DAU O41 O41 O 0 1 N N N N N N 37.219 22.468 21.295 6.503 3.772 1.617 O41 DAU 36
DAU HO6 HO6 H 0 1 N N N N N N 48.020 15.889 18.912 -2.928 3.563 3.377 HO6 DAU 37
DAU HC61 HC61 H 0 0 N N N N N N 47.516 16.274 21.122 -4.831 3.785 1.951 HC61 DAU 38
DAU HC62 HC62 H 0 0 N N N N N N 49.179 16.791 20.681 -3.326 4.253 1.125 HC62 DAU 39
DAU HC5 HC5 H 0 1 N N N N N N 48.367 19.114 20.452 -3.127 1.903 0.258 HC5 DAU 40
DAU HC4 HC4 H 0 1 N N N N N N 47.927 17.624 23.075 -5.739 3.355 -0.368 HC4 DAU 41
DAU HO4 HO4 H 0 1 N N N N N N 50.065 18.510 23.449 -4.349 4.301 -2.065 HO4 DAU 42
DAU HC3 HC3 H 0 1 N N N N N N 48.327 20.607 22.668 -4.122 1.355 -2.017 HC3 DAU 43
DAU HO3 HO3 H 0 1 N N N N N N 47.875 20.529 24.945 -6.000 1.634 -3.467 HO3 DAU 44
DAU HC2 HC2 H 0 1 N N N N N N 45.881 19.096 23.596 -6.862 1.092 -0.692 HC2 DAU 45
DAU HO2 HO2 H 0 1 N N N N N N 45.014 21.235 23.487 -6.612 -1.133 -1.522 HO2 DAU 46
DAU HC1 HC1 H 0 1 N N N N N N 44.830 19.830 21.526 -5.750 -0.556 0.768 HC1 DAU 47
DAU H4PO H4PO H 0 0 N N N N N N 46.061 23.439 18.934 -4.275 -3.229 -0.284 H4PO DAU 48
DAU H2PO H2PO H 0 0 N N N N N N 44.825 20.300 15.479 -0.866 -4.544 -0.628 H2PO DAU 49
DAU HC51 HC51 H 0 0 N N N N N N 43.872 18.098 18.111 2.428 -2.446 0.955 HC51 DAU 50
DAU HC52 HC52 H 0 0 N N N N N N 43.011 18.480 19.640 2.180 -3.803 -0.170 HC52 DAU 51
DAU "H4'C" "H4'C" H 0 0 N N N N N N 41.907 16.761 18.140 2.826 -2.288 -2.076 "H4'C" DAU 52
DAU "H3'C" "H3'C" H 0 0 N N N N N N 42.392 18.455 16.059 4.753 -2.695 0.280 "H3'C" DAU 53
DAU "H3'O" "H3'O" H 0 0 N N N N N N 40.726 17.070 15.091 5.713 -4.152 -1.351 "H3'O" DAU 54
DAU HC21 HC21 H 0 0 N N N N N N 41.081 20.228 16.998 6.278 -1.219 -0.728 HC21 DAU 55
DAU HC22 HC22 H 0 0 N N N N N N 39.943 19.476 15.829 5.753 -1.667 -2.381 HC22 DAU 56
DAU "H1'C" "H1'C" H 0 0 N N N N N N 38.885 18.162 17.527 4.307 0.112 -2.420 "H1'C" DAU 57
DAU H61C H61C H 0 0 N N N N N N 40.736 21.051 18.970 5.224 2.174 -2.264 H61C DAU 58
DAU H5A1 H5A1 H 0 0 N N N N N N 39.240 23.610 21.326 5.401 5.040 -1.106 H5A1 DAU 59
DAU H5A2 H5A2 H 0 0 N N N N N N 40.741 22.625 21.261 7.081 4.817 -0.562 H5A2 DAU 60
DAU H5A3 H5A3 H 0 0 N N N N N N 40.267 23.634 19.853 6.565 4.180 -2.142 H5A3 DAU 61
DAU H31N H31N H 0 0 N N N N N N 36.135 20.476 20.250 5.799 1.571 2.447 H31N DAU 62
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DAU O6 C6 SING N N 1
DAU O6 HO6 SING N N 2
DAU C6 C5 SING N N 3
DAU C6 HC61 SING N N 4
DAU C6 HC62 SING N N 5
DAU C5 O5 SING N N 6
DAU C5 C4 SING N N 7
DAU C5 HC5 SING N N 8
DAU O5 C1 SING N N 9
DAU C4 O4 SING N N 10
DAU C4 C3 SING N N 11
DAU C4 HC4 SING N N 12
DAU O4 HO4 SING N N 13
DAU C3 O3 SING N N 14
DAU C3 C2 SING N N 15
DAU C3 HC3 SING N N 16
DAU O3 HO3 SING N N 17
DAU C2 O2 SING N N 18
DAU C2 C1 SING N N 19
DAU C2 HC2 SING N N 20
DAU O2 HO2 SING N N 21
DAU C1 O1 SING N N 22
DAU C1 HC1 SING N N 23
DAU O1 P2 SING N N 24
DAU P2 O3P DOUB N N 25
DAU P2 O4P SING N N 26
DAU P2 OPP SING N N 27
DAU O4P H4PO SING N N 28
DAU OPP P SING N N 29
DAU P O1P DOUB N N 30
DAU P O2P SING N N 31
DAU P "O5'" SING N N 32
DAU O2P H2PO SING N N 33
DAU "O5'" "C5'" SING N N 34
DAU "C5'" "C4'" SING N N 35
DAU "C5'" HC51 SING N N 36
DAU "C5'" HC52 SING N N 37
DAU "C4'" "O4'" SING N N 38
DAU "C4'" "C3'" SING N N 39
DAU "C4'" "H4'C" SING N N 40
DAU "O4'" "C1'" SING N N 41
DAU "C3'" "O3'" SING N N 42
DAU "C3'" "C2'" SING N N 43
DAU "C3'" "H3'C" SING N N 44
DAU "O3'" "H3'O" SING N N 45
DAU "C2'" "C1'" SING N N 46
DAU "C2'" HC21 SING N N 47
DAU "C2'" HC22 SING N N 48
DAU "C1'" N11 SING N N 49
DAU "C1'" "H1'C" SING N N 50
DAU N11 C61 SING N N 51
DAU N11 C21 SING N N 52
DAU C61 C51 DOUB N N 53
DAU C61 H61C SING N N 54
DAU C51 C5A SING N N 55
DAU C51 C41 SING N N 56
DAU C5A H5A1 SING N N 57
DAU C5A H5A2 SING N N 58
DAU C5A H5A3 SING N N 59
DAU C21 O21 DOUB N N 60
DAU C21 N31 SING N N 61
DAU N31 C41 SING N N 62
DAU N31 H31N SING N N 63
DAU C41 O41 DOUB N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DAU SMILES ACDLabs 12.01 O=C1C(=CN(C(=O)N1)C2OC(C(O)C2)COP(=O)(OP(=O)(OC3OC(C(O)C(O)C3O)CO)O)O)C
DAU InChI InChI 1.03 InChI=1S/C16H26N2O16P2/c1-6-3-18(16(25)17-14(6)24)10-2-7(20)9(31-10)5-30-35(26,27)34-36(28,29)33-15-13(23)12(22)11(21)8(4-19)32-15/h3,7-13,15,19-23H,2,4-5H2,1H3,(H,26,27)(H,28,29)(H,17,24,25)/t7-,8+,9+,10+,11+,12-,13+,15+/m0/s1
DAU InChIKey InChI 1.03 YSYKRGRSMLTJNL-URARBOGNSA-N
DAU SMILES_CANONICAL CACTVS 3.370 CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)O2)C(=O)NC1=O
DAU SMILES CACTVS 3.370 CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)O2)C(=O)NC1=O
DAU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO[P@](=O)(O)O[P@](=O)(O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O
DAU SMILES "OpenEye OEToolkits" 1.7.6 CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OP(=O)(O)OC3C(C(C(C(O3)CO)O)O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DAU "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl (2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)"
DAU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DAU 'Create component' 2000-11-16 RCSB
DAU 'Modify descriptor' 2011-06-04 RCSB
DAU 'Modify atom id' 2012-05-16 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id DAU
_pdbe_chem_comp_drugbank_details.drugbank_id DB03751
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "2'deoxy-Thymidine-5'-Diphospho-Alpha-D-Glucose"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DAU
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03751
_pdbe_chem_comp_drugbank_classification.parent 'Pyrimidine nucleotide sugars'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Pyrimidine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as pyrimidine nucleotide sugars. These are pyrimidine nucleotides bound to a saccharide derivative through the terminal phosphate group.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
DAU DB03751 'dTDP-glucose 4,6-dehydratase' 'Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)' P26391 unknown 1
DAU DB03751 'dTDP-4-dehydrorhamnose 3,5-epimerase' 'Streptococcus suis' Q8GIQ0 unknown 2
DAU DB03751 'dTDP-glucose 4,6-dehydratase' 'Streptococcus mutans serotype c (strain ATCC 700610 / UA159)' P95780 unknown 3
DAU DB03751 'Glucose-1-phosphate thymidylyltransferase' 'Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)' Q9HU22 unknown 4
DAU DB03751 'dTDP-glucose 4,6-dehydratase' 'Streptomyces venezuelae' Q9ZGH3 unknown 5
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DAU O6 O 3.805 -1.095 1
DAU C6 C 3.805 -2.595 2
DAU C5 C 5.104 -3.345 3
DAU O5 O 6.404 -2.595 4
DAU C4 C 5.104 -4.845 5
DAU O4 O 3.805 -5.595 6
DAU C3 C 6.404 -5.595 7
DAU O3 O 6.404 -7.095 8
DAU C2 C 7.702 -4.845 9
DAU O2 O 9.002 -5.595 10
DAU C1 C 7.702 -3.345 11
DAU O1 O 9.002 -2.595 12
DAU P2 P 9.002 -1.095 13
DAU O3P O 10.502 -1.095 14
DAU O4P O 7.502 -1.095 15
DAU OPP O 9.002 0.405 16
DAU P P 10.301 1.155 17
DAU O1P O 9.551 2.454 18
DAU O2P O 11.051 -0.144 19
DAU "O5'" O 11.600 1.905 20
DAU "C5'" C 11.600 3.405 21
DAU "C4'" C 12.899 4.155 22
DAU "O4'" O 14.269 3.545 23
DAU "C3'" C 13.055 5.647 24
DAU "O3'" O 11.941 6.650 25
DAU "C2'" C 14.523 5.959 26
DAU "C1'" C 15.273 4.660 27
DAU N11 N 16.765 4.503 28
DAU C61 C 17.646 5.716 29
DAU C51 C 19.138 5.559 30
DAU C5A C 20.020 6.773 31
DAU C21 C 17.375 3.132 32
DAU O21 O 16.493 1.919 33
DAU N31 N 18.866 2.976 34
DAU C41 C 19.748 4.189 35
DAU O41 O 21.240 4.032 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DAU O6 C6 SINGLE NONE 1
DAU C5 C6 SINGLE BEGINWEDGE 2
DAU C5 O5 SINGLE NONE 3
DAU C5 C4 SINGLE NONE 4
DAU O5 C1 SINGLE NONE 5
DAU C4 O4 SINGLE BEGINDASH 6
DAU C4 C3 SINGLE NONE 7
DAU C3 O3 SINGLE BEGINWEDGE 8
DAU C3 C2 SINGLE NONE 9
DAU C2 O2 SINGLE BEGINDASH 10
DAU C2 C1 SINGLE NONE 11
DAU C1 O1 SINGLE BEGINDASH 12
DAU O1 P2 SINGLE NONE 13
DAU P2 O3P DOUBLE NONE 14
DAU P2 O4P SINGLE BEGINDASH 15
DAU P2 OPP SINGLE NONE 16
DAU OPP P SINGLE NONE 17
DAU P O1P DOUBLE NONE 18
DAU P O2P SINGLE BEGINWEDGE 19
DAU P "O5'" SINGLE NONE 20
DAU "O5'" "C5'" SINGLE NONE 21
DAU "C4'" "C5'" SINGLE BEGINDASH 22
DAU "C4'" "O4'" SINGLE NONE 23
DAU "C4'" "C3'" SINGLE NONE 24
DAU "O4'" "C1'" SINGLE NONE 25
DAU "C3'" "O3'" SINGLE BEGINWEDGE 26
DAU "C3'" "C2'" SINGLE NONE 27
DAU "C2'" "C1'" SINGLE NONE 28
DAU "C1'" N11 SINGLE BEGINDASH 29
DAU N11 C61 SINGLE NONE 30
DAU N11 C21 SINGLE NONE 31
DAU C61 C51 DOUBLE NONE 32
DAU C51 C5A SINGLE NONE 33
DAU C51 C41 SINGLE NONE 34
DAU C21 O21 DOUBLE NONE 35
DAU C21 N31 SINGLE NONE 36
DAU N31 C41 SINGLE NONE 37
DAU C41 O41 DOUBLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DAU MurckoScaffold S1 scaffold 'O=c1ccn([C@H]2CC[C@@H](CO[PH](=O)O[PH](=O)O[C@@H]3CCCCO3)O2)c(=O)[nH]1' InChI=1S/C14H22N2O9P2/c17-11-6-7-16(14(18)15-11)12-5-4-10(23-12)9-22-26(19)25-27(20)24-13-3-1-2-8-21-13/h6-7,10,12-13,26-27H,1-5,8-9H2,(H,15,17,18)/t10-,12+,13+/m0/s1 AKKVBKIXAFLMCT-CYZMBNFOSA-N
DAU deoxyribose F1 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
DAU phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
DAU pyranose F3 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
DAU pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DAU C5 S1 1
DAU O5 S1 1
DAU C4 S1 1
DAU C3 S1 1
DAU C2 S1 1
DAU C1 S1 1
DAU O1 S1 1
DAU P2 S1 1
DAU O3P S1 1
DAU OPP S1 1
DAU P S1 1
DAU O1P S1 1
DAU "O5'" S1 1
DAU "C5'" S1 1
DAU "C4'" S1 1
DAU "O4'" S1 1
DAU "C3'" S1 1
DAU "C2'" S1 1
DAU "C1'" S1 1
DAU N11 S1 1
DAU C61 S1 1
DAU C51 S1 1
DAU C21 S1 1
DAU O21 S1 1
DAU N31 S1 1
DAU C41 S1 1
DAU O41 S1 1
DAU "C1'" F1 1
DAU "C2'" F1 1
DAU "C3'" F1 1
DAU "O3'" F1 1
DAU "C4'" F1 1
DAU "O4'" F1 1
DAU "C5'" F1 1
DAU "O5'" F1 1
DAU O1 F2 1
DAU P2 F2 1
DAU O3P F2 1
DAU O4P F2 1
DAU OPP F2 1
DAU OPP F2 2
DAU P F2 2
DAU O1P F2 2
DAU O2P F2 2
DAU "O5'" F2 2
DAU C4 F3 1
DAU C5 F3 1
DAU O5 F3 1
DAU C1 F3 1
DAU C2 F3 1
DAU C3 F3 1
DAU O1 F3 1
DAU C51 F4 1
DAU C61 F4 1
DAU N11 F4 1
DAU C21 F4 1
DAU N31 F4 1
DAU C41 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DAU
_pdbe_chem_comp_rdkit_properties.exactmw 564.076
_pdbe_chem_comp_rdkit_properties.amw 564.330
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 18
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 17
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 62
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 20
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.750
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 238.192
_pdbe_chem_comp_rdkit_properties.tpsa 276.760
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.711
_pdbe_chem_comp_rdkit_properties.CrippenMR 112.083
_pdbe_chem_comp_rdkit_properties.chi0v 18.110
_pdbe_chem_comp_rdkit_properties.chi1v 11.153
_pdbe_chem_comp_rdkit_properties.chi2v 5.695
_pdbe_chem_comp_rdkit_properties.chi3v 5.695
_pdbe_chem_comp_rdkit_properties.chi4v 3.760
_pdbe_chem_comp_rdkit_properties.chi0n 42.321
_pdbe_chem_comp_rdkit_properties.chi1n 20.537
_pdbe_chem_comp_rdkit_properties.chi2n 3.391
_pdbe_chem_comp_rdkit_properties.chi3n 3.391
_pdbe_chem_comp_rdkit_properties.chi4n 1.995
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.340
_pdbe_chem_comp_rdkit_properties.kappa1 10.002
_pdbe_chem_comp_rdkit_properties.kappa2 11.184
_pdbe_chem_comp_rdkit_properties.kappa3 6.746
_pdbe_chem_comp_rdkit_properties.Phi 3.107
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DAU UniChem ChEMBL CHEMBL412989
DAU UniChem DrugBank DB03751
DAU UniChem PDBe DAU
DAU UniChem 'KEGG LIGAND' C00842
DAU UniChem ChEBI 15700
DAU UniChem SureChEMBL SCHEMBL1521109
DAU UniChem HMDB HMDB0001328
DAU UniChem NMRShiftDB 60021089
DAU UniChem ACTor 2196-62-5
DAU UniChem Nikkaji J631.152K
DAU UniChem 'EPA CompTox Dashboard' DTXSID70332067
DAU UniChem MetaboLights MTBLC15700
DAU UniChem BRENDA 176023
DAU UniChem BRENDA 1766
DAU UniChem BRENDA 195886
DAU UniChem BRENDA 214832
DAU UniChem BRENDA 30432
DAU UniChem BRENDA 3814
DAU UniChem BRENDA 47546
DAU UniChem BRENDA 7290
DAU UniChem BRENDA 903
DAU UniChem BRENDA 91858
DAU UniChem BRENDA 9374
DAU UniChem 'Probes And Drugs' PD059486
DAU UniChem PubChem 443210
DAU UniChem 'PubChem TPHARMA' 16066588
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DAU O6 -5.379 -3.461 -0.355 ETKDGv3 1
DAU C6 -4.662 -2.415 0.242 ETKDGv3 2
DAU C5 -5.557 -1.179 0.452 ETKDGv3 3
DAU O5 -4.888 -0.230 1.280 ETKDGv3 4
DAU C4 -6.085 -0.586 -0.893 ETKDGv3 5
DAU O4 -7.282 -1.218 -1.268 ETKDGv3 6
DAU C3 -6.341 0.922 -0.722 ETKDGv3 7
DAU O3 -6.825 1.495 -1.912 ETKDGv3 8
DAU C2 -5.062 1.654 -0.236 ETKDGv3 9
DAU O2 -5.409 2.765 0.555 ETKDGv3 10
DAU C1 -4.117 0.688 0.522 ETKDGv3 11
DAU O1 -3.280 1.434 1.383 ETKDGv3 12
DAU P2 -1.975 0.458 1.900 ETKDGv3 13
DAU O3P -2.504 -0.740 2.658 ETKDGv3 14
DAU O4P -1.091 -0.069 0.554 ETKDGv3 15
DAU OPP -1.002 1.397 2.934 ETKDGv3 16
DAU P 0.469 0.567 3.164 ETKDGv3 17
DAU O1P 1.211 1.207 4.316 ETKDGv3 18
DAU O2P 0.192 -1.060 3.547 ETKDGv3 19
DAU "O5'" 1.434 0.647 1.760 ETKDGv3 20
DAU "C5'" 1.605 2.002 1.411 ETKDGv3 21
DAU "C4'" 2.547 2.119 0.207 ETKDGv3 22
DAU "O4'" 3.777 1.500 0.493 ETKDGv3 23
DAU "C3'" 1.983 1.472 -1.055 ETKDGv3 24
DAU "O3'" 1.245 2.390 -1.817 ETKDGv3 25
DAU "C2'" 3.224 1.036 -1.795 ETKDGv3 26
DAU "C1'" 4.337 1.143 -0.751 ETKDGv3 27
DAU N11 5.078 -0.124 -0.633 ETKDGv3 28
DAU C61 6.386 -0.229 -1.233 ETKDGv3 29
DAU C51 7.112 -1.358 -1.165 ETKDGv3 30
DAU C5A 8.459 -1.431 -1.829 ETKDGv3 31
DAU C21 4.495 -1.282 -0.000 ETKDGv3 32
DAU O21 3.330 -1.239 0.480 ETKDGv3 33
DAU N31 5.242 -2.495 0.073 ETKDGv3 34
DAU C41 6.545 -2.555 -0.507 ETKDGv3 35
DAU O41 7.200 -3.630 -0.459 ETKDGv3 36
DAU HO6 -5.960 -3.847 0.352 ETKDGv3 37
DAU HC61 -3.800 -2.160 -0.410 ETKDGv3 38
DAU HC62 -4.248 -2.749 1.221 ETKDGv3 39
DAU HC5 -6.443 -1.516 1.035 ETKDGv3 40
DAU HC4 -5.316 -0.715 -1.693 ETKDGv3 41
DAU HO4 -7.035 -2.025 -1.789 ETKDGv3 42
DAU HC3 -7.137 1.034 0.048 ETKDGv3 43
DAU HO3 -6.151 1.330 -2.622 ETKDGv3 44
DAU HC2 -4.500 2.036 -1.116 ETKDGv3 45
DAU HO2 -5.820 2.422 1.391 ETKDGv3 46
DAU HC1 -3.504 0.160 -0.248 ETKDGv3 47
DAU H4PO -0.999 0.735 -0.016 ETKDGv3 48
DAU H2PO -0.288 -1.039 4.413 ETKDGv3 49
DAU HC51 0.629 2.469 1.147 ETKDGv3 50
DAU HC52 2.064 2.573 2.251 ETKDGv3 51
DAU "H4'C" 2.734 3.202 0.018 ETKDGv3 52
DAU "H3'C" 1.370 0.571 -0.818 ETKDGv3 53
DAU "H3'O" 0.365 2.486 -1.369 ETKDGv3 54
DAU HC21 3.442 1.712 -2.652 ETKDGv3 55
DAU HC22 3.104 0.000 -2.183 ETKDGv3 56
DAU "H1'C" 5.031 1.962 -1.050 ETKDGv3 57
DAU H61C 6.797 0.630 -1.752 ETKDGv3 58
DAU H5A1 8.349 -1.880 -2.838 ETKDGv3 59
DAU H5A2 8.917 -0.424 -1.930 ETKDGv3 60
DAU H5A3 9.153 -2.056 -1.228 ETKDGv3 61
DAU H31N 4.833 -3.338 0.535 ETKDGv3 62
#