data_DDH
#
_chem_comp.id DDH
_chem_comp.name "[7,12-DEACETYL-3,8,13,17-TETRAMETHYL-21H,23H-PORPHINE-2,18-DIPROPANOATO(2-)-N21,N22,N23,N24]-IRON"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H32 Fe N4 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms DIACETYLDEUTEROHEME
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2023-09-23
_chem_comp.pdbx_ambiguous_flag Y
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 648.486
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DDH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 1B86
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DDH FE FE FE 0 0 N N N N N N -5.689 57.028 20.961 ? ? ? FE DDH 1
DDH NA "N A" N 0 1 N N S N N N -6.305 56.304 22.540 ? ? ? NA DDH 2
DDH NB "N B" N 0 1 N N N N N N -6.711 58.678 21.586 ? ? ? NB DDH 3
DDH NC "N C" N 0 1 Y N N N N N -4.994 57.967 19.390 ? ? ? NC DDH 4
DDH ND "N D" N 0 1 N N N N N N -4.467 55.428 20.527 ? ? ? ND DDH 5
DDH C1A C1A C 0 1 N N N N N N -5.993 54.975 22.896 ? ? ? C1A DDH 6
DDH CHA CHA C 0 1 N N N N N N -5.423 53.935 22.193 ? ? ? CHA DDH 7
DDH C4D C4D C 0 1 N N N N N N -4.704 54.176 21.042 ? ? ? C4D DDH 8
DDH C1B C1B C 0 1 N N N N N N -7.463 58.876 22.704 ? ? ? C1B DDH 9
DDH CHB CHB C 0 1 N N N N N N -7.573 58.056 23.804 ? ? ? CHB DDH 10
DDH C4A C4A C 0 1 N N N N N N -7.164 56.764 23.542 ? ? ? C4A DDH 11
DDH C1C C1C C 0 1 Y N N N N N -5.196 59.322 19.101 ? ? ? C1C DDH 12
DDH CHC CHC C 0 1 N N N N N N -6.062 60.175 19.741 ? ? ? CHC DDH 13
DDH C4B C4B C 0 1 N N N N N N -6.833 59.824 20.817 ? ? ? C4B DDH 14
DDH C1D C1D C 0 1 N N N N N N -3.873 55.251 19.298 ? ? ? C1D DDH 15
DDH CHD CHD C 0 1 N N N N N N -3.508 56.253 18.425 ? ? ? CHD DDH 16
DDH C4C C4C C 0 1 Y N N N N N -4.056 57.531 18.465 ? ? ? C4C DDH 17
DDH C2A C2A C 0 1 N N N N N N -6.544 54.706 24.199 ? ? ? C2A DDH 18
DDH CAA CAA C 0 1 N N N N N N -6.536 53.279 24.789 ? ? ? CAA DDH 19
DDH C3A C3A C 0 1 N N N N N N -7.250 55.780 24.581 ? ? ? C3A DDH 20
DDH CMA CMA C 0 1 N N N N N N -8.195 55.885 25.796 ? ? ? CMA DDH 21
DDH CBA CBA C 0 1 N N N N N N -5.466 53.073 25.876 ? ? ? CBA DDH 22
DDH CGA CGA C 0 1 N N N N N N -5.415 51.705 26.542 ? ? ? CGA DDH 23
DDH O1A O1A O 0 1 N N N N N N -6.221 51.437 27.463 ? ? ? O1A DDH 24
DDH O2A O2A O 0 1 N N N N N N -4.484 50.928 26.222 ? ? ? O2A DDH 25
DDH C2B C2B C 0 1 N N N N N N -7.985 60.229 22.703 ? ? ? C2B DDH 26
DDH CMB CMB C 0 1 N N N N N N -8.778 60.839 23.858 ? ? ? CMB DDH 27
DDH C3B C3B C 0 1 N N N N N N -7.529 60.834 21.605 ? ? ? C3B DDH 28
DDH CAB CAB C 0 1 N N N N N N -7.946 62.196 21.039 ? ? ? CAB DDH 29
DDH OCB OCB O 0 1 N N N N N N -7.106 62.904 20.481 ? ? ? OCB DDH 30
DDH CBB CBB C 0 1 N N N N N N -9.093 62.749 21.473 ? ? ? CBB DDH 31
DDH C2C C2C C 0 1 Y N N N N N -4.420 59.687 17.935 ? ? ? C2C DDH 32
DDH CMC CMC C 0 1 N N N N N N -4.371 61.045 17.199 ? ? ? CMC DDH 33
DDH C3C C3C C 0 1 Y N N N N N -3.654 58.660 17.636 ? ? ? C3C DDH 34
DDH CAC CAC C 0 1 N N N N N N -2.567 58.576 16.561 ? ? ? CAC DDH 35
DDH OCC OCC O 0 1 N N N N N N -1.645 57.835 16.831 ? ? ? OCC DDH 36
DDH CBC CBC C 0 1 N N N N N N -2.477 59.424 15.523 ? ? ? CBC DDH 37
DDH C2D C2D C 0 1 N N N N N N -3.482 53.843 19.171 ? ? ? C2D DDH 38
DDH CMD CMD C 0 1 N N N N N N -2.862 53.257 17.889 ? ? ? CMD DDH 39
DDH C3D C3D C 0 1 N N N N N N -4.008 53.196 20.221 ? ? ? C3D DDH 40
DDH CAD CAD C 0 1 N N N N N N -4.084 51.682 20.514 ? ? ? CAD DDH 41
DDH CBD CBD C 0 1 N N N N N N -2.979 51.270 21.483 ? ? ? CBD DDH 42
DDH CGD CGD C 0 1 N N N N N N -2.972 49.819 21.887 ? ? ? CGD DDH 43
DDH O1D O1D O 0 1 N N N N N N -2.214 49.624 22.873 ? ? ? O1D DDH 44
DDH O2D O2D O 0 1 N N N N N N -3.681 49.041 21.202 ? ? ? O2D DDH 45
DDH HHA HHA H 0 1 N N N N N N -5.541 52.922 22.548 ? ? ? HHA DDH 46
DDH HHB HHB H 0 1 N N N N N N -7.939 58.387 24.765 ? ? ? HHB DDH 47
DDH HHC HHC H 0 1 N N N N N N -6.140 61.187 19.372 ? ? ? HHC DDH 48
DDH HHD HHD H 0 1 N N N N N N -2.762 56.036 17.675 ? ? ? HHD DDH 49
DDH HAA1 HAA1 H 0 0 N N N N N N -7.524 53.078 25.230 ? ? ? HAA1 DDH 50
DDH HAA2 HAA2 H 0 0 N N N N N N -6.346 52.566 23.973 ? ? ? HAA2 DDH 51
DDH HMA1 HMA1 H 0 0 N N N N N N -8.065 55.003 26.440 ? ? ? HMA1 DDH 52
DDH HMA2 HMA2 H 0 0 N N N N N N -7.957 56.794 26.368 ? ? ? HMA2 DDH 53
DDH HMA3 HMA3 H 0 0 N N N N N N -9.237 55.933 25.447 ? ? ? HMA3 DDH 54
DDH HBA1 HBA1 H 0 0 N N N N N N -4.484 53.255 25.414 ? ? ? HBA1 DDH 55
DDH HBA2 HBA2 H 0 0 N N N N N N -5.645 53.820 26.664 ? ? ? HBA2 DDH 56
DDH HO2A HO2A H 0 0 N N N N N N -4.511 50.156 26.775 ? ? ? HO2A DDH 57
DDH HMB1 HMB1 H 0 0 N N N N N N -9.056 61.873 23.607 ? ? ? HMB1 DDH 58
DDH HMB2 HMB2 H 0 0 N N N N N N -9.688 60.246 24.031 ? ? ? HMB2 DDH 59
DDH HMB3 HMB3 H 0 0 N N N N N N -8.160 60.836 24.768 ? ? ? HMB3 DDH 60
DDH HOCB HOCB H 0 0 N N N N N N -7.515 63.709 20.187 ? ? ? HOCB DDH 61
DDH HBB1 HBB1 H 0 0 N N N N N N -9.271 63.805 21.331 ? ? ? HBB1 DDH 62
DDH HBB2 HBB2 H 0 0 N N N N N N -9.836 62.137 21.963 ? ? ? HBB2 DDH 63
DDH HMC1 HMC1 H 0 0 N N N N N N -3.615 61.690 17.669 ? ? ? HMC1 DDH 64
DDH HMC2 HMC2 H 0 0 N N N N N N -4.108 60.881 16.144 ? ? ? HMC2 DDH 65
DDH HMC3 HMC3 H 0 0 N N N N N N -5.356 61.531 17.260 ? ? ? HMC3 DDH 66
DDH HBC1 HBC1 H 0 0 N N N N N N -1.498 59.306 15.036 ? ? ? HBC1 DDH 67
DDH HBC2 HBC2 H 0 0 N N N N N N -3.275 59.203 14.799 ? ? ? HBC2 DDH 68
DDH HBC3 HBC3 H 0 0 N N N N N N -2.585 60.458 15.884 ? ? ? HBC3 DDH 69
DDH HMD1 HMD1 H 0 0 N N N N N N -2.656 52.187 18.037 ? ? ? HMD1 DDH 70
DDH HMD2 HMD2 H 0 0 N N N N N N -3.564 53.383 17.052 ? ? ? HMD2 DDH 71
DDH HMD3 HMD3 H 0 0 N N N N N N -1.923 53.783 17.662 ? ? ? HMD3 DDH 72
DDH HAD1 HAD1 H 0 0 N N N N N N -5.062 51.448 20.959 ? ? ? HAD1 DDH 73
DDH HAD2 HAD2 H 0 0 N N N N N N -3.967 51.125 19.573 ? ? ? HAD2 DDH 74
DDH HBD1 HBD1 H 0 0 N N N N N N -2.012 51.493 21.008 ? ? ? HBD1 DDH 75
DDH HBD2 HBD2 H 0 0 N N N N N N -3.087 51.874 22.396 ? ? ? HBD2 DDH 76
DDH HO1D HO1D H 0 0 N N N N N N -2.217 48.701 23.098 ? ? ? HO1D DDH 77
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DDH FE NA SING N N 1
DDH FE NB SING N N 2
DDH FE NC SING N N 3
DDH FE ND SING N N 4
DDH NA C1A SING N N 5
DDH NA C4A SING N N 6
DDH NB C1B DOUB N N 7
DDH NB C4B SING N N 8
DDH NC C1C SING Y N 9
DDH NC C4C SING Y N 10
DDH ND C4D DOUB N N 11
DDH ND C1D SING N N 12
DDH C1A CHA DOUB N N 13
DDH C1A C2A SING N N 14
DDH CHA C4D SING N N 15
DDH CHA HHA SING N N 16
DDH C4D C3D SING N N 17
DDH C1B CHB SING N N 18
DDH C1B C2B SING N N 19
DDH CHB C4A DOUB N N 20
DDH CHB HHB SING N N 21
DDH C4A C3A SING N N 22
DDH C1C CHC SING N N 23
DDH C1C C2C DOUB Y N 24
DDH CHC C4B DOUB N N 25
DDH CHC HHC SING N N 26
DDH C4B C3B SING N N 27
DDH C1D CHD DOUB N N 28
DDH C1D C2D SING N N 29
DDH CHD C4C SING N N 30
DDH CHD HHD SING N N 31
DDH C4C C3C DOUB Y N 32
DDH C2A CAA SING N N 33
DDH C2A C3A DOUB N N 34
DDH CAA CBA SING N N 35
DDH CAA HAA1 SING N N 36
DDH CAA HAA2 SING N N 37
DDH C3A CMA SING N N 38
DDH CMA HMA1 SING N N 39
DDH CMA HMA2 SING N N 40
DDH CMA HMA3 SING N N 41
DDH CBA CGA SING N N 42
DDH CBA HBA1 SING N N 43
DDH CBA HBA2 SING N N 44
DDH CGA O1A DOUB N N 45
DDH CGA O2A SING N N 46
DDH O2A HO2A SING N N 47
DDH C2B CMB SING N N 48
DDH C2B C3B DOUB N N 49
DDH CMB HMB1 SING N N 50
DDH CMB HMB2 SING N N 51
DDH CMB HMB3 SING N N 52
DDH C3B CAB SING N N 53
DDH CAB OCB SING N N 54
DDH CAB CBB DOUB N N 55
DDH OCB HOCB SING N N 56
DDH CBB HBB1 SING N N 57
DDH CBB HBB2 SING N N 58
DDH C2C CMC SING N N 59
DDH C2C C3C SING Y N 60
DDH CMC HMC1 SING N N 61
DDH CMC HMC2 SING N N 62
DDH CMC HMC3 SING N N 63
DDH C3C CAC SING N N 64
DDH CAC OCC DOUB N N 65
DDH CAC CBC SING N N 66
DDH CBC HBC1 SING N N 67
DDH CBC HBC2 SING N N 68
DDH CBC HBC3 SING N N 69
DDH C2D CMD SING N N 70
DDH C2D C3D DOUB N N 71
DDH CMD HMD1 SING N N 72
DDH CMD HMD2 SING N N 73
DDH CMD HMD3 SING N N 74
DDH C3D CAD SING N N 75
DDH CAD CBD SING N N 76
DDH CAD HAD1 SING N N 77
DDH CAD HAD2 SING N N 78
DDH CBD CGD SING N N 79
DDH CBD HBD1 SING N N 80
DDH CBD HBD2 SING N N 81
DDH CGD O1D SING N N 82
DDH CGD O2D DOUB N N 83
DDH O1D HO1D SING N N 84
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DDH InChI InChI 1.06 InChI=1S/C34H34N4O6.Fe/c1-15-21(7-9-31(41)42)27-14-28-22(8-10-32(43)44)16(2)24(36-28)12-29-34(20(6)40)18(4)26(38-29)13-30-33(19(5)39)17(3)25(37-30)11-23(15)35-27;/h11-14H,5,7-10H2,1-4,6H3,(H5,35,36,37,38,39,40,41,42,43,44);/q;+2/p-2/b23-11-,24-12-,25-11-,26-13-,27-14-,28-14-,29-12-,30-13-;
DDH InChIKey InChI 1.06 OWIWZAJUMZLTLI-IDTMDVKXSA-L
DDH SMILES_CANONICAL CACTVS 3.385 CC(=O)c1c(C)c2C=C3N=C(C=C4[N@@]5[Fe]n2c1C=C6N=C(C=C5C(=C4C)CCC(O)=O)C(=C6C)CCC(O)=O)C(=C3C(O)=C)C
DDH SMILES CACTVS 3.385 CC(=O)c1c(C)c2C=C3N=C(C=C4[N]5[Fe]n2c1C=C6N=C(C=C5C(=C4C)CCC(O)=O)C(=C6C)CCC(O)=O)C(=C3C(O)=C)C
DDH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1c2n3c(c1C(=O)C)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)CCC(=O)O)C(=C(C7=C2)C(=C)O)C)CCC(=O)O)C
DDH SMILES "OpenEye OEToolkits" 2.0.7 Cc1c2n3c(c1C(=O)C)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)CCC(=O)O)C(=C(C7=C2)C(=C)O)C)CCC(=O)O)C
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id DDH
_pdbx_chem_comp_synonyms.name DIACETYLDEUTEROHEME
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DDH 'Modify synonyms' 2021-03-01 PDBE
DDH 'Modify descriptor' 2023-09-23 RCSB
#
_pdbe_chem_comp_synonyms.comp_id DDH
_pdbe_chem_comp_synonyms.name DIACETYLDEUTEROHEME
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DDH FE Fe 0.000 0.000 1
DDH NA N -1.518 1.556 2
DDH NB N 1.556 1.556 3
DDH NC N 1.556 -1.556 4
DDH ND N -1.518 -1.556 5
DDH C1A C -2.999 1.291 6
DDH CHA C -3.758 0.000 7
DDH C4D C -2.999 -1.291 8
DDH C1B C 1.329 3.037 9
DDH CHB C 0.000 3.796 10
DDH C4A C -1.291 3.037 11
DDH C1C C 3.037 -1.291 12
DDH CHC C 3.796 0.000 13
DDH C4B C 3.037 1.291 14
DDH C1D C -1.291 -3.037 15
DDH CHD C 0.000 -3.796 16
DDH C4C C 1.329 -3.037 17
DDH C2A C -3.682 2.657 18
DDH CAA C -5.190 2.908 19
DDH C3A C -2.619 3.720 20
DDH CMA C -2.855 5.205 21
DDH CBA C -5.717 4.312 22
DDH CGA C -7.196 4.558 23
DDH O1A O -8.149 3.399 24
DDH O2A O -7.723 5.962 25
DDH C2B C 2.658 3.720 26
DDH CMB C 2.886 5.197 27
DDH C3B C 3.758 2.657 28
DDH CAB C 5.265 2.923 29
DDH OCB O 5.779 4.333 30
DDH CBB C 6.230 1.774 31
DDH C2C C 3.758 -2.657 32
DDH CMC C 5.288 -2.877 33
DDH C3C C 2.658 -3.720 34
DDH CAC C 2.871 -5.236 35
DDH OCC O 4.261 -5.798 36
DDH CBC C 1.689 -6.159 37
DDH C2D C -2.619 -3.720 38
DDH CMD C -2.848 -5.197 39
DDH C3D C -3.682 -2.657 40
DDH CAD C -5.167 -2.892 41
DDH CBD C -6.111 -1.727 42
DDH CGD C -7.593 -1.961 43
DDH O1D O -8.537 -0.795 44
DDH O2D O -8.130 -3.362 45
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DDH FE NA SINGLE NONE 1
DDH NB FE DATIVE NONE 2
DDH FE NC SINGLE NONE 3
DDH ND FE DATIVE NONE 4
DDH NA C1A SINGLE ENDUPRIGHT 5
DDH NA C4A SINGLE ENDUPRIGHT 6
DDH NB C1B DOUBLE NONE 7
DDH NB C4B SINGLE ENDUPRIGHT 8
DDH NC C1C SINGLE NONE 9
DDH NC C4C SINGLE NONE 10
DDH ND C4D DOUBLE NONE 11
DDH ND C1D SINGLE ENDUPRIGHT 12
DDH C1A CHA DOUBLE NONE 13
DDH C1A C2A SINGLE ENDUPRIGHT 14
DDH CHA C4D SINGLE ENDDOWNRIGHT 15
DDH C4D C3D SINGLE NONE 16
DDH C1B CHB SINGLE ENDUPRIGHT 17
DDH C1B C2B SINGLE NONE 18
DDH CHB C4A DOUBLE NONE 19
DDH C4A C3A SINGLE ENDUPRIGHT 20
DDH C1C CHC SINGLE ENDUPRIGHT 21
DDH C1C C2C DOUBLE NONE 22
DDH CHC C4B DOUBLE NONE 23
DDH C4B C3B SINGLE ENDUPRIGHT 24
DDH C1D CHD DOUBLE NONE 25
DDH C1D C2D SINGLE ENDUPRIGHT 26
DDH CHD C4C SINGLE ENDDOWNRIGHT 27
DDH C4C C3C DOUBLE NONE 28
DDH C2A CAA SINGLE NONE 29
DDH C2A C3A DOUBLE NONE 30
DDH CAA CBA SINGLE NONE 31
DDH C3A CMA SINGLE NONE 32
DDH CBA CGA SINGLE NONE 33
DDH CGA O1A DOUBLE NONE 34
DDH CGA O2A SINGLE NONE 35
DDH C2B CMB SINGLE NONE 36
DDH C2B C3B DOUBLE NONE 37
DDH C3B CAB SINGLE NONE 38
DDH CAB OCB SINGLE NONE 39
DDH CAB CBB DOUBLE NONE 40
DDH C2C CMC SINGLE NONE 41
DDH C2C C3C SINGLE NONE 42
DDH C3C CAC SINGLE NONE 43
DDH CAC OCC DOUBLE NONE 44
DDH CAC CBC SINGLE NONE 45
DDH C2D CMD SINGLE NONE 46
DDH C2D C3D DOUBLE NONE 47
DDH C3D CAD SINGLE NONE 48
DDH CAD CBD SINGLE NONE 49
DDH CBD CGD SINGLE NONE 50
DDH CGD O1D SINGLE NONE 51
DDH CGD O2D DOUBLE NONE 52
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DDH MurckoScaffold S1 scaffold 'C1=C/C2=C/c3ccc4n3[Fe@SP2]35<-N2=C1/C=c1/cc/c(n13)=C/C1=N->5/C(=C\4)C=C1' 'InChI=1S/C20H12N4.Fe/c1-2-14-10-16-5-6-18(23-16)12-20-8-7-19(24-20)11-17-4-3-15(22-17)9-13(1)21-14;/h1-12H;/q-2;+2/b13-9-,14-10-,15-9?,16-10?,17-11-,18-12-,19-11?,20-12?;' XVFTZEQSXCJEIQ-GPJYPRJCSA-N
DDH porphin-like F1 fragment C1~C~C2~C~C3~C~C~C(~C~C4~C~C~C(~C~C5~C~C~C(~C~C~1~N~2)~N~5)~N~4)~N~3 ? ?
DDH pyrrole F2 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DDH FE S1 1
DDH NA S1 1
DDH NB S1 1
DDH NC S1 1
DDH ND S1 1
DDH C1A S1 1
DDH CHA S1 1
DDH C4D S1 1
DDH C1B S1 1
DDH CHB S1 1
DDH C4A S1 1
DDH C1C S1 1
DDH CHC S1 1
DDH C4B S1 1
DDH C1D S1 1
DDH CHD S1 1
DDH C4C S1 1
DDH C2A S1 1
DDH C3A S1 1
DDH C2B S1 1
DDH C3B S1 1
DDH C2C S1 1
DDH C3C S1 1
DDH C2D S1 1
DDH C3D S1 1
DDH C2A F1 1
DDH C3A F1 1
DDH C4A F1 1
DDH CHB F1 1
DDH C1B F1 1
DDH NB F1 1
DDH C4B F1 1
DDH C3B F1 1
DDH C2B F1 1
DDH CHC F1 1
DDH C1C F1 1
DDH NC F1 1
DDH C4C F1 1
DDH CHD F1 1
DDH C1D F1 1
DDH ND F1 1
DDH C4D F1 1
DDH CHA F1 1
DDH C1A F1 1
DDH NA F1 1
DDH C3D F1 1
DDH C2D F1 1
DDH C3C F1 1
DDH C2C F1 1
DDH C1A F2 1
DDH C2A F2 1
DDH C3A F2 1
DDH C4A F2 1
DDH NA F2 1
DDH C1C F2 2
DDH C2C F2 2
DDH C3C F2 2
DDH C4C F2 2
DDH NC F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id DDH
_pdbe_chem_comp_rdkit_properties.exactmw 648.167
_pdbe_chem_comp_rdkit_properties.amw 648.497
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 45
_pdbe_chem_comp_rdkit_properties.NumAtoms 77
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.265
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 6
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 306.069
_pdbe_chem_comp_rdkit_properties.tpsa 133.560
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.655
_pdbe_chem_comp_rdkit_properties.CrippenMR 166.758
_pdbe_chem_comp_rdkit_properties.chi0v 22.696
_pdbe_chem_comp_rdkit_properties.chi1v 14.121
_pdbe_chem_comp_rdkit_properties.chi2v 11.876
_pdbe_chem_comp_rdkit_properties.chi3v 11.876
_pdbe_chem_comp_rdkit_properties.chi4v 11.130
_pdbe_chem_comp_rdkit_properties.chi0n 53.592
_pdbe_chem_comp_rdkit_properties.chi1n 27.871
_pdbe_chem_comp_rdkit_properties.chi2n 7.250
_pdbe_chem_comp_rdkit_properties.chi3n 7.250
_pdbe_chem_comp_rdkit_properties.chi4n 5.674
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.731
_pdbe_chem_comp_rdkit_properties.kappa1 9.883
_pdbe_chem_comp_rdkit_properties.kappa2 8.708
_pdbe_chem_comp_rdkit_properties.kappa3 3.071
_pdbe_chem_comp_rdkit_properties.Phi 1.912
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DDH FE 0.706 -0.079 0.058 ETKDGv3 1
DDH NA -0.293 1.490 0.747 ETKDGv3 2
DDH NB 2.449 0.897 0.379 ETKDGv3 3
DDH NC 1.709 -1.651 -0.641 ETKDGv3 4
DDH ND -1.039 -1.048 -0.256 ETKDGv3 5
DDH C1A -1.690 1.607 0.952 ETKDGv3 6
DDH CHA -2.574 0.669 0.637 ETKDGv3 7
DDH C4D -2.241 -0.612 -0.005 ETKDGv3 8
DDH C1B 2.603 2.113 0.820 ETKDGv3 9
DDH CHB 1.522 3.041 1.186 ETKDGv3 10
DDH C4A 0.229 2.741 1.153 ETKDGv3 11
DDH C1C 3.115 -1.791 -0.779 ETKDGv3 12
DDH CHC 4.091 -0.765 -0.408 ETKDGv3 13
DDH C4B 3.773 0.404 0.148 ETKDGv3 14
DDH C1D -1.219 -2.341 -0.842 ETKDGv3 15
DDH CHD -0.254 -3.155 -1.272 ETKDGv3 16
DDH C4C 1.177 -2.868 -1.147 ETKDGv3 17
DDH C2A -2.007 2.935 1.507 ETKDGv3 18
DDH CAA -3.379 3.450 1.876 ETKDGv3 19
DDH C3A -0.864 3.626 1.583 ETKDGv3 20
DDH CMA -0.704 5.021 2.122 ETKDGv3 21
DDH CBA -4.034 4.219 0.721 ETKDGv3 22
DDH CGA -4.418 3.310 -0.405 ETKDGv3 23
DDH O1A -5.517 2.694 -0.372 ETKDGv3 24
DDH O2A -3.540 3.110 -1.465 ETKDGv3 25
DDH C2B 4.025 2.479 0.925 ETKDGv3 26
DDH CMB 4.564 3.796 1.409 ETKDGv3 27
DDH C3B 4.741 1.441 0.515 ETKDGv3 28
DDH CAB 6.217 1.375 0.439 ETKDGv3 29
DDH OCB 6.910 2.425 -0.163 ETKDGv3 30
DDH CBB 6.883 0.340 0.954 ETKDGv3 31
DDH C2C 3.422 -2.984 -1.290 ETKDGv3 32
DDH CMC 4.803 -3.517 -1.544 ETKDGv3 33
DDH C3C 2.159 -3.680 -1.548 ETKDGv3 34
DDH CAC 2.004 -5.018 -2.159 ETKDGv3 35
DDH OCC 1.218 -5.856 -1.642 ETKDGv3 36
DDH CBC 2.781 -5.410 -3.377 ETKDGv3 37
DDH C2D -2.648 -2.643 -0.910 ETKDGv3 38
DDH CMD -3.291 -3.876 -1.484 ETKDGv3 39
DDH C3D -3.272 -1.571 -0.440 ETKDGv3 40
DDH CAD -4.764 -1.375 -0.351 ETKDGv3 41
DDH CBD -5.280 -1.784 1.030 ETKDGv3 42
DDH CGD -6.749 -1.529 1.134 ETKDGv3 43
DDH O1D -7.208 -0.272 1.517 ETKDGv3 44
DDH O2D -7.571 -2.437 0.836 ETKDGv3 45
DDH HHA -3.616 0.862 0.837 ETKDGv3 46
DDH HHB 1.809 4.026 1.526 ETKDGv3 47
DDH HHC 5.132 -0.970 -0.611 ETKDGv3 48
DDH HHD -0.542 -4.085 -1.737 ETKDGv3 49
DDH HAA1 -3.298 4.122 2.757 ETKDGv3 50
DDH HAA2 -4.036 2.616 2.200 ETKDGv3 51
DDH HMA1 0.071 5.566 1.545 ETKDGv3 52
DDH HMA2 -0.402 4.973 3.188 ETKDGv3 53
DDH HMA3 -1.643 5.603 2.035 ETKDGv3 54
DDH HBA1 -3.346 5.006 0.344 ETKDGv3 55
DDH HBA2 -4.947 4.729 1.099 ETKDGv3 56
DDH HO2A -3.773 2.476 -2.220 ETKDGv3 57
DDH HMB1 4.006 4.126 2.309 ETKDGv3 58
DDH HMB2 4.454 4.557 0.609 ETKDGv3 59
DDH HMB3 5.632 3.720 1.697 ETKDGv3 60
DDH HOCB 7.921 2.431 -0.232 ETKDGv3 61
DDH HBB1 7.964 0.299 0.898 ETKDGv3 62
DDH HBB2 6.364 -0.468 1.454 ETKDGv3 63
DDH HMC1 5.203 -3.084 -2.485 ETKDGv3 64
DDH HMC2 4.788 -4.621 -1.624 ETKDGv3 65
DDH HMC3 5.479 -3.263 -0.701 ETKDGv3 66
DDH HBC1 3.241 -4.520 -3.856 ETKDGv3 67
DDH HBC2 2.102 -5.890 -4.112 ETKDGv3 68
DDH HBC3 3.575 -6.132 -3.098 ETKDGv3 69
DDH HMD1 -2.669 -4.770 -1.275 ETKDGv3 70
DDH HMD2 -4.284 -4.059 -1.026 ETKDGv3 71
DDH HMD3 -3.407 -3.757 -2.581 ETKDGv3 72
DDH HAD1 -5.009 -0.310 -0.550 ETKDGv3 73
DDH HAD2 -5.280 -1.965 -1.138 ETKDGv3 74
DDH HBD1 -5.075 -2.863 1.205 ETKDGv3 75
DDH HBD2 -4.757 -1.201 1.819 ETKDGv3 76
DDH HO1D -8.201 -0.078 1.575 ETKDGv3 77
#