data_DE6
#
_chem_comp.id DE6
_chem_comp.name
1-[(5~{S},8~{R},15~{S},18~{S})-15,18-bis(4-azanylbutyl)-5-methyl-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H52 N10 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-07-30
_chem_comp.pdbx_modified_date 2020-06-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 644.809
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DE6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6KK5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DE6 C10 C1 C 0 1 N N R N N N -5.444 6.032 -18.764 3.654 3.451 -0.785 C10 DE6 1
DE6 C15 C2 C 0 1 N N N N N N -6.892 5.681 -19.089 2.205 3.488 -1.277 C15 DE6 2
DE6 C17 C3 C 0 1 N N N N N N -9.122 5.231 -18.136 -0.063 3.093 -0.308 C17 DE6 3
DE6 C20 C4 C 0 1 N N N N N N -8.963 5.821 -14.767 -2.499 2.123 -0.540 C20 DE6 4
DE6 C22 C5 C 0 1 N N S N N N -8.442 5.177 -13.489 -3.727 1.351 -0.949 C22 DE6 5
DE6 C24 C6 C 0 1 N N N N N N -8.063 5.310 -11.051 -6.225 1.377 -1.002 C24 DE6 6
DE6 C26 C7 C 0 1 N N N N N N -8.035 3.387 -9.475 -8.723 1.402 -1.055 C26 DE6 7
DE6 C01 C8 C 0 1 Y N N N N N 0.124 7.573 -17.240 3.427 -5.586 0.309 C01 DE6 8
DE6 C02 C9 C 0 1 Y N N N N N -0.986 8.400 -17.166 3.296 -4.474 -0.501 C02 DE6 9
DE6 C03 C10 C 0 1 N N N N N N -1.136 9.591 -18.110 4.466 -3.544 -0.699 C03 DE6 10
DE6 C05 C11 C 0 1 N N N N N N -3.552 10.106 -18.593 4.900 -1.208 -0.267 C05 DE6 11
DE6 C06 C12 C 0 1 N N S N N N -4.802 9.853 -19.433 4.738 0.051 0.544 C06 DE6 12
DE6 C07 C13 C 0 1 N N N N N N -6.051 10.555 -18.906 3.491 -0.062 1.423 C07 DE6 13
DE6 C09 C14 C 0 1 N N N N N N -5.235 7.524 -18.490 3.853 2.244 0.096 C09 DE6 14
DE6 C12 C15 C 0 1 N N N N N N -3.188 5.443 -19.747 5.235 5.122 0.086 C12 DE6 15
DE6 C16 C16 C 0 1 N N N N N N -7.801 5.955 -17.900 1.276 3.804 -0.102 C16 DE6 16
DE6 C18 C17 C 0 1 N N N N N N -10.080 5.575 -17.002 -1.179 4.132 -0.423 C18 DE6 17
DE6 C23 C18 C 0 1 N N N N N N -8.823 5.933 -12.221 -4.979 2.095 -0.479 C23 DE6 18
DE6 C25 C19 C 0 1 N N N N N N -8.896 4.178 -10.455 -7.477 2.120 -0.533 C25 DE6 19
DE6 C29 C20 C 0 1 N N N N N N -6.465 3.668 -13.821 -3.028 -0.959 -1.013 C29 DE6 20
DE6 C31 C21 C 0 1 N N S N N N -4.955 3.452 -13.821 -2.944 -2.343 -0.423 C31 DE6 21
DE6 C32 C22 C 0 1 N N N N N N -4.632 2.513 -12.657 -2.244 -2.281 0.936 C32 DE6 22
DE6 C33 C23 C 0 1 N N N N N N -3.131 2.379 -12.414 -2.970 -1.281 1.839 C33 DE6 23
DE6 C34 C24 C 0 1 N N N N N N -2.941 1.614 -11.102 -2.372 -1.337 3.246 C34 DE6 24
DE6 C35 C25 C 0 1 N N N N N N -1.494 1.143 -10.971 -3.099 -0.337 4.148 C35 DE6 25
DE6 C38 C26 C 0 1 N N N N N N -3.664 5.473 -14.682 -1.130 -3.887 -0.772 C38 DE6 26
DE6 C40 C27 C 0 1 N N N N N N -2.968 6.793 -14.353 -0.289 -4.787 -1.640 C40 DE6 27
DE6 C41 C28 C 0 1 Y N N N N N -1.865 7.064 -15.374 1.021 -5.069 -0.952 C41 DE6 28
DE6 C42 C29 C 0 1 Y N N N N N -1.980 8.141 -16.237 2.094 -4.215 -1.132 C42 DE6 29
DE6 C43 C30 C 0 1 Y N N N N N -0.755 6.239 -15.444 1.151 -6.180 -0.140 C43 DE6 30
DE6 C44 C31 C 0 1 Y N N N N N 0.240 6.493 -16.377 2.354 -6.439 0.490 C44 DE6 31
DE6 N04 N1 N 0 1 N N N N N N -2.335 9.377 -18.898 4.267 -2.343 0.137 N04 DE6 32
DE6 N08 N2 N 0 1 N N N N N N -5.011 8.424 -19.611 4.590 1.197 -0.382 N08 DE6 33
DE6 N11 N3 N 0 1 N N N N N N -4.624 5.588 -19.876 3.942 4.666 -0.020 N11 DE6 34
DE6 N13 N4 N 0 1 N N N N N N -2.616 5.704 -18.663 5.505 6.263 0.804 N13 DE6 35
DE6 N14 N5 N 0 1 N N N N N N -2.418 4.992 -20.892 6.204 4.471 -0.494 N14 DE6 36
DE6 N19 N6 N 0 1 N N N N N N -9.580 4.983 -15.776 -2.418 3.449 -0.860 N19 DE6 37
DE6 N27 N7 N 0 1 N N N N N N -8.843 2.392 -8.792 -9.925 2.116 -0.605 N27 DE6 38
DE6 N28 N8 N 0 1 N N N N N N -7.006 4.978 -13.516 -3.681 0.015 -0.322 N28 DE6 39
DE6 N36 N9 N 0 1 N N N N N N -1.193 0.913 -9.566 -2.524 -0.390 5.499 N36 DE6 40
DE6 N37 N10 N 0 1 N N N N N N -4.276 4.718 -13.599 -2.165 -3.203 -1.344 N37 DE6 41
DE6 O21 O1 O 0 1 N N N N N N -8.865 6.990 -14.937 -1.598 1.577 0.062 O21 DE6 42
DE6 O30 O2 O 0 1 N N N N N N -7.196 2.763 -14.050 -2.522 -0.717 -2.088 O30 DE6 43
DE6 O39 O3 O 0 1 N N N N N N -3.700 5.079 -15.802 -0.893 -3.773 0.412 O39 DE6 44
DE6 O45 O4 O 0 1 N N N N N N -5.258 7.934 -17.376 3.370 2.203 1.207 O45 DE6 45
DE6 O46 O5 O 0 1 N N N N N N -3.575 10.888 -17.703 5.587 -1.211 -1.267 O46 DE6 46
DE6 H1 H1 H 0 1 N N N N N N -5.153 5.477 -17.860 4.326 3.391 -1.640 H1 DE6 47
DE6 H2 H2 H 0 1 N N N N N N -7.226 6.287 -19.944 2.101 4.259 -2.040 H2 DE6 48
DE6 H3 H3 H 0 1 N N N N N N -6.953 4.614 -19.350 1.940 2.520 -1.700 H3 DE6 49
DE6 H4 H4 H 0 1 N N N N N N -9.554 5.553 -19.095 -0.023 2.500 -1.222 H4 DE6 50
DE6 H5 H5 H 0 1 N N N N N N -8.950 4.145 -18.158 -0.261 2.439 0.541 H5 DE6 51
DE6 H6 H6 H 0 1 N N N N N N -8.914 4.186 -13.419 -3.749 1.247 -2.033 H6 DE6 52
DE6 H7 H7 H 0 1 N N N N N N -7.102 4.911 -11.408 -6.202 1.355 -2.092 H7 DE6 53
DE6 H8 H8 H 0 1 N N N N N N -7.880 6.075 -10.283 -6.243 0.356 -0.619 H8 DE6 54
DE6 H9 H9 H 0 1 N N N N N N -7.226 2.884 -10.025 -8.700 1.380 -2.145 H9 DE6 55
DE6 H10 H10 H 0 1 N N N N N N -7.602 4.075 -8.734 -8.741 0.381 -0.672 H10 DE6 56
DE6 H11 H11 H 0 1 N N N N N N 0.897 7.769 -17.968 4.366 -5.788 0.802 H11 DE6 57
DE6 H12 H12 H 0 1 N N N N N N -0.260 9.658 -18.771 5.386 -4.047 -0.402 H12 DE6 58
DE6 H13 H13 H 0 1 N N N N N N -1.230 10.521 -17.529 4.528 -3.253 -1.747 H13 DE6 59
DE6 H14 H14 H 0 1 N N N N N N -4.601 10.280 -20.427 5.616 0.200 1.172 H14 DE6 60
DE6 H15 H15 H 0 1 N N N N N N -5.846 11.629 -18.788 3.446 -1.058 1.864 H15 DE6 61
DE6 H16 H16 H 0 1 N N N N N N -6.878 10.416 -19.618 3.536 0.684 2.216 H16 DE6 62
DE6 H17 H17 H 0 1 N N N N N N -6.330 10.126 -17.932 2.601 0.106 0.816 H17 DE6 63
DE6 H18 H18 H 0 1 N N N N N N -7.331 5.582 -16.978 1.733 3.458 0.825 H18 DE6 64
DE6 H19 H19 H 0 1 N N N N N N -7.980 7.037 -17.809 1.112 4.880 -0.048 H19 DE6 65
DE6 H20 H20 H 0 1 N N N N N N -10.141 6.667 -16.888 -1.344 4.602 0.547 H20 DE6 66
DE6 H21 H21 H 0 1 N N N N N N -11.079 5.173 -17.227 -0.901 4.889 -1.156 H21 DE6 67
DE6 H22 H22 H 0 1 N N N N N N -8.548 6.993 -12.322 -5.002 2.116 0.610 H22 DE6 68
DE6 H23 H23 H 0 1 N N N N N N -9.906 5.850 -12.049 -4.961 3.115 -0.863 H23 DE6 69
DE6 H24 H24 H 0 1 N N N N N N -9.764 4.598 -9.926 -7.500 2.141 0.557 H24 DE6 70
DE6 H25 H25 H 0 1 N N N N N N -9.243 3.513 -11.260 -7.458 3.140 -0.916 H25 DE6 71
DE6 H26 H26 H 0 1 N N N N N N -4.640 2.995 -14.771 -3.947 -2.751 -0.302 H26 DE6 72
DE6 H27 H27 H 0 1 N N N N N N -5.103 2.907 -11.745 -2.260 -3.267 1.399 H27 DE6 73
DE6 H28 H28 H 0 1 N N N N N N -5.043 1.518 -12.882 -1.211 -1.961 0.798 H28 DE6 74
DE6 H29 H29 H 0 1 N N N N N N -2.665 1.825 -13.242 -2.855 -0.276 1.434 H29 DE6 75
DE6 H30 H30 H 0 1 N N N N N N -2.673 3.376 -12.336 -4.029 -1.536 1.884 H30 DE6 76
DE6 H31 H31 H 0 1 N N N N N N -3.186 2.275 -10.257 -2.487 -2.342 3.651 H31 DE6 77
DE6 H32 H32 H 0 1 N N N N N N -3.610 0.741 -11.090 -1.313 -1.082 3.201 H32 DE6 78
DE6 H33 H33 H 0 1 N N N N N N -1.359 0.208 -11.534 -2.983 0.668 3.743 H33 DE6 79
DE6 H34 H34 H 0 1 N N N N N N -0.818 1.913 -11.371 -4.157 -0.591 4.193 H34 DE6 80
DE6 H35 H35 H 0 1 N N N N N N -2.528 6.733 -13.347 -0.818 -5.724 -1.811 H35 DE6 81
DE6 H36 H36 H 0 1 N N N N N N -3.703 7.611 -14.383 -0.100 -4.297 -2.595 H36 DE6 82
DE6 H37 H37 H 0 1 N N N N N N -2.848 8.781 -16.185 1.992 -3.347 -1.765 H37 DE6 83
DE6 H38 H38 H 0 1 N N N N N N -0.664 5.398 -14.773 0.313 -6.846 0.001 H38 DE6 84
DE6 H39 H39 H 0 1 N N N N N N 1.106 5.849 -16.431 2.455 -7.308 1.123 H39 DE6 85
DE6 H40 H40 H 0 1 N N N N N N -2.323 8.724 -19.655 3.712 -2.362 0.932 H40 DE6 86
DE6 H41 H41 H 0 1 N N N N N N -5.000 8.047 -20.537 4.988 1.204 -1.266 H41 DE6 87
DE6 H42 H42 H 0 1 N N N N N N -5.060 5.377 -20.751 3.220 5.150 0.412 H42 DE6 88
DE6 H43 H43 H 0 1 N N N N N N -3.151 6.015 -17.878 4.784 6.747 1.235 H43 DE6 89
DE6 H44 H44 H 0 1 N N N N N N -1.625 5.601 -18.583 6.417 6.584 0.878 H44 DE6 90
DE6 H45 H45 H 0 1 N N N N N N -1.441 4.931 -20.686 7.116 4.793 -0.419 H45 DE6 91
DE6 H46 H46 H 0 1 N N N N N N -9.661 3.997 -15.627 -3.124 3.910 -1.341 H46 DE6 92
DE6 H47 H47 H 0 1 N N N N N N -8.271 1.879 -8.152 -10.762 1.660 -0.937 H47 DE6 93
DE6 H48 H48 H 0 1 N N N N N N -9.578 2.847 -8.290 -9.937 2.205 0.400 H48 DE6 94
DE6 H50 H50 H 0 1 N N N N N N -6.390 5.742 -13.325 -4.095 -0.159 0.538 H50 DE6 95
DE6 H51 H51 H 0 1 N N N N N N -0.246 0.604 -9.474 -1.530 -0.221 5.476 H51 DE6 96
DE6 H52 H52 H 0 1 N N N N N N -1.317 1.764 -9.055 -2.988 0.262 6.115 H52 DE6 97
DE6 H54 H54 H 0 1 N N N N N N -4.228 5.083 -12.669 -2.375 -3.275 -2.288 H54 DE6 98
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DE6 N14 C12 DOUB N N 1
DE6 N11 C12 SING N N 2
DE6 N11 C10 SING N N 3
DE6 C12 N13 SING N N 4
DE6 N08 C06 SING N N 5
DE6 N08 C09 SING N N 6
DE6 C06 C07 SING N N 7
DE6 C06 C05 SING N N 8
DE6 C15 C10 SING N N 9
DE6 C15 C16 SING N N 10
DE6 N04 C05 SING N N 11
DE6 N04 C03 SING N N 12
DE6 C10 C09 SING N N 13
DE6 C05 O46 DOUB N N 14
DE6 C09 O45 DOUB N N 15
DE6 C17 C16 SING N N 16
DE6 C17 C18 SING N N 17
DE6 C03 C02 SING N N 18
DE6 C01 C02 DOUB Y N 19
DE6 C01 C44 SING Y N 20
DE6 C02 C42 SING Y N 21
DE6 C18 N19 SING N N 22
DE6 C44 C43 DOUB Y N 23
DE6 C42 C41 DOUB Y N 24
DE6 O39 C38 DOUB N N 25
DE6 N19 C20 SING N N 26
DE6 C43 C41 SING Y N 27
DE6 C41 C40 SING N N 28
DE6 O21 C20 DOUB N N 29
DE6 C20 C22 SING N N 30
DE6 C38 C40 SING N N 31
DE6 C38 N37 SING N N 32
DE6 O30 C29 DOUB N N 33
DE6 C29 C31 SING N N 34
DE6 C29 N28 SING N N 35
DE6 C31 N37 SING N N 36
DE6 C31 C32 SING N N 37
DE6 N28 C22 SING N N 38
DE6 C22 C23 SING N N 39
DE6 C32 C33 SING N N 40
DE6 C33 C34 SING N N 41
DE6 C23 C24 SING N N 42
DE6 C34 C35 SING N N 43
DE6 C24 C25 SING N N 44
DE6 C35 N36 SING N N 45
DE6 C25 C26 SING N N 46
DE6 C26 N27 SING N N 47
DE6 C10 H1 SING N N 48
DE6 C15 H2 SING N N 49
DE6 C15 H3 SING N N 50
DE6 C17 H4 SING N N 51
DE6 C17 H5 SING N N 52
DE6 C22 H6 SING N N 53
DE6 C24 H7 SING N N 54
DE6 C24 H8 SING N N 55
DE6 C26 H9 SING N N 56
DE6 C26 H10 SING N N 57
DE6 C01 H11 SING N N 58
DE6 C03 H12 SING N N 59
DE6 C03 H13 SING N N 60
DE6 C06 H14 SING N N 61
DE6 C07 H15 SING N N 62
DE6 C07 H16 SING N N 63
DE6 C07 H17 SING N N 64
DE6 C16 H18 SING N N 65
DE6 C16 H19 SING N N 66
DE6 C18 H20 SING N N 67
DE6 C18 H21 SING N N 68
DE6 C23 H22 SING N N 69
DE6 C23 H23 SING N N 70
DE6 C25 H24 SING N N 71
DE6 C25 H25 SING N N 72
DE6 C31 H26 SING N N 73
DE6 C32 H27 SING N N 74
DE6 C32 H28 SING N N 75
DE6 C33 H29 SING N N 76
DE6 C33 H30 SING N N 77
DE6 C34 H31 SING N N 78
DE6 C34 H32 SING N N 79
DE6 C35 H33 SING N N 80
DE6 C35 H34 SING N N 81
DE6 C40 H35 SING N N 82
DE6 C40 H36 SING N N 83
DE6 C42 H37 SING N N 84
DE6 C43 H38 SING N N 85
DE6 C44 H39 SING N N 86
DE6 N04 H40 SING N N 87
DE6 N08 H41 SING N N 88
DE6 N11 H42 SING N N 89
DE6 N13 H43 SING N N 90
DE6 N13 H44 SING N N 91
DE6 N14 H45 SING N N 92
DE6 N19 H46 SING N N 93
DE6 N27 H47 SING N N 94
DE6 N27 H48 SING N N 95
DE6 N28 H50 SING N N 96
DE6 N36 H51 SING N N 97
DE6 N36 H52 SING N N 98
DE6 N37 H54 SING N N 99
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DE6 InChI InChI 1.03 InChI=1S/C31H52N10O5/c1-20-27(43)37-19-22-10-8-9-21(17-22)18-26(42)39-24(12-3-6-15-33)30(46)40-23(11-2-5-14-32)28(44)36-16-7-4-13-25(29(45)38-20)41-31(34)35/h8-10,17,20,23-25H,2-7,11-16,18-19,32-33H2,1H3,(H,36,44)(H,37,43)(H,38,45)(H,39,42)(H,40,46)(H4,34,35,41)/t20-,23-,24-,25+/m0/s1
DE6 InChIKey InChI 1.03 WUGZEUIQIOXIIV-WAABAYLZSA-N
DE6 SMILES_CANONICAL CACTVS 3.385 C[C@@H]1NC(=O)[C@@H](CCCCNC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)Cc2cccc(CNC1=O)c2)NC(N)=N
DE6 SMILES CACTVS 3.385 C[CH]1NC(=O)[CH](CCCCNC(=O)[CH](CCCCN)NC(=O)[CH](CCCCN)NC(=O)Cc2cccc(CNC1=O)c2)NC(N)=N
DE6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\N[C@@H]1CCCCNC(=O)[C@@H](NC(=O)[C@@H](NC(=O)Cc2cccc(c2)CNC(=O)[C@@H](NC1=O)C)CCCCN)CCCCN"
DE6 SMILES "OpenEye OEToolkits" 2.0.7 CC1C(=O)NCc2cccc(c2)CC(=O)NC(C(=O)NC(C(=O)NCCCCC(C(=O)N1)NC(=N)N)CCCCN)CCCCN
#
_pdbx_chem_comp_identifier.comp_id DE6
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
1-[(5~{S},8~{R},15~{S},18~{S})-15,18-bis(4-azanylbutyl)-5-methyl-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DE6 'Create component' 2019-07-30 PDBJ
DE6 'Initial release' 2020-06-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DE6 C10 C -0.245 -5.146 1
DE6 C15 C -0.102 -3.469 2
DE6 C17 C -2.701 -1.898 3
DE6 C20 C -2.452 2.426 4
DE6 C22 C -3.571 3.130 5
DE6 C24 C -4.642 0.985 6
DE6 C26 C -5.619 -1.331 7
DE6 C01 C 4.831 -0.696 8
DE6 C02 C 3.578 -1.517 9
DE6 C03 C 3.659 -3.011 10
DE6 C05 C 5.049 -5.187 11
DE6 C06 C 3.764 -5.979 12
DE6 C07 C 3.808 -7.484 13
DE6 C09 C 1.095 -5.964 14
DE6 C12 C -2.827 -5.407 15
DE6 C16 C -1.126 -2.106 16
DE6 C18 C -3.270 -0.330 17
DE6 C23 C -4.781 2.440 18
DE6 C25 C -5.804 0.133 19
DE6 C29 C -2.016 5.584 20
DE6 C31 C -0.528 4.938 21
DE6 C32 C 0.674 5.825 22
DE6 C33 C 0.525 7.312 23
DE6 C34 C 1.751 8.168 24
DE6 C35 C 1.633 9.657 25
DE6 C38 C 0.914 2.866 26
DE6 C40 C 0.911 1.348 27
DE6 C41 C 2.153 0.654 28
DE6 C42 C 2.236 -0.844 29
DE6 C43 C 3.406 1.476 30
DE6 C44 C 4.748 0.803 31
DE6 N04 N 4.992 -3.694 32
DE6 N08 N 2.426 -5.233 33
DE6 N11 N -1.525 -5.972 34
DE6 N13 N -4.038 -6.311 35
DE6 N14 N -2.971 -3.960 36
DE6 N19 N -2.226 0.829 37
DE6 N27 N -6.810 -2.215 38
DE6 N28 N -3.451 4.712 39
DE6 N36 N 2.873 10.500 40
DE6 N37 N -0.349 3.487 41
DE6 O21 O -1.491 3.115 42
DE6 O30 O -2.112 7.085 43
DE6 O39 O 2.183 3.658 44
DE6 O45 O 1.071 -7.483 45
DE6 O46 O 6.379 -5.889 46
DE6 H45 H -4.316 -3.362 47
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DE6 N14 C12 DOUBLE NONE 1
DE6 N11 C12 SINGLE ENDDOWNRIGHT 2
DE6 C10 N11 SINGLE BEGINDASH 3
DE6 C12 N13 SINGLE ENDDOWNRIGHT 4
DE6 N08 C06 SINGLE NONE 5
DE6 N08 C09 SINGLE NONE 6
DE6 C06 C07 SINGLE BEGINDASH 7
DE6 C06 C05 SINGLE NONE 8
DE6 C15 C10 SINGLE NONE 9
DE6 C15 C16 SINGLE NONE 10
DE6 N04 C05 SINGLE NONE 11
DE6 N04 C03 SINGLE NONE 12
DE6 C10 C09 SINGLE NONE 13
DE6 C05 O46 DOUBLE NONE 14
DE6 C09 O45 DOUBLE NONE 15
DE6 C17 C16 SINGLE NONE 16
DE6 C17 C18 SINGLE NONE 17
DE6 C03 C02 SINGLE NONE 18
DE6 C01 C02 DOUBLE NONE 19
DE6 C01 C44 SINGLE NONE 20
DE6 C02 C42 SINGLE NONE 21
DE6 C18 N19 SINGLE NONE 22
DE6 C44 C43 DOUBLE NONE 23
DE6 C42 C41 DOUBLE NONE 24
DE6 O39 C38 DOUBLE NONE 25
DE6 N19 C20 SINGLE NONE 26
DE6 C43 C41 SINGLE NONE 27
DE6 C41 C40 SINGLE NONE 28
DE6 O21 C20 DOUBLE NONE 29
DE6 C20 C22 SINGLE NONE 30
DE6 C38 C40 SINGLE NONE 31
DE6 C38 N37 SINGLE NONE 32
DE6 O30 C29 DOUBLE NONE 33
DE6 C29 C31 SINGLE NONE 34
DE6 C29 N28 SINGLE NONE 35
DE6 C31 N37 SINGLE NONE 36
DE6 C31 C32 SINGLE BEGINDASH 37
DE6 N28 C22 SINGLE NONE 38
DE6 C22 C23 SINGLE BEGINDASH 39
DE6 C32 C33 SINGLE NONE 40
DE6 C33 C34 SINGLE NONE 41
DE6 C23 C24 SINGLE NONE 42
DE6 C34 C35 SINGLE NONE 43
DE6 C24 C25 SINGLE NONE 44
DE6 C35 N36 SINGLE NONE 45
DE6 C25 C26 SINGLE NONE 46
DE6 C26 N27 SINGLE NONE 47
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DE6 MurckoScaffold S1 scaffold O=C1CCCCCNC(=O)CNC(=O)CNC(=O)Cc2cccc(c2)CNC(=O)CN1 InChI=1S/C21H29N5O5/c27-17-7-2-1-3-8-22-19(29)12-26-21(31)14-25-18(28)10-15-5-4-6-16(9-15)11-23-20(30)13-24-17/h4-6,9H,1-3,7-8,10-14H2,(H,22,29)(H,23,30)(H,24,27)(H,25,28)(H,26,31) JDGBBDUDHBFTNQ-UHFFFAOYSA-N
DE6 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
DE6 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
DE6 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DE6 C10 S1 1
DE6 C15 S1 1
DE6 C17 S1 1
DE6 C20 S1 1
DE6 C22 S1 1
DE6 C01 S1 1
DE6 C02 S1 1
DE6 C03 S1 1
DE6 C05 S1 1
DE6 C06 S1 1
DE6 C09 S1 1
DE6 C16 S1 1
DE6 C18 S1 1
DE6 C29 S1 1
DE6 C31 S1 1
DE6 C38 S1 1
DE6 C40 S1 1
DE6 C41 S1 1
DE6 C42 S1 1
DE6 C43 S1 1
DE6 C44 S1 1
DE6 N04 S1 1
DE6 N08 S1 1
DE6 N19 S1 1
DE6 N28 S1 1
DE6 N37 S1 1
DE6 O21 S1 1
DE6 O30 S1 1
DE6 O39 S1 1
DE6 O45 S1 1
DE6 O46 S1 1
DE6 N04 F1 1
DE6 C05 F1 1
DE6 O46 F1 1
DE6 C06 F1 1
DE6 N08 F1 2
DE6 C09 F1 2
DE6 O45 F1 2
DE6 C10 F1 2
DE6 N19 F1 3
DE6 C20 F1 3
DE6 O21 F1 3
DE6 C22 F1 3
DE6 N28 F1 4
DE6 C29 F1 4
DE6 O30 F1 4
DE6 C31 F1 4
DE6 N37 F1 5
DE6 C38 F1 5
DE6 O39 F1 5
DE6 C40 F1 5
DE6 O21 F2 1
DE6 C20 F2 1
DE6 C22 F2 1
DE6 N28 F2 1
DE6 O30 F2 2
DE6 C29 F2 2
DE6 C31 F2 2
DE6 N37 F2 2
DE6 O45 F2 3
DE6 C09 F2 3
DE6 C10 F2 3
DE6 N11 F2 3
DE6 O46 F2 4
DE6 C05 F2 4
DE6 C06 F2 4
DE6 N08 F2 4
DE6 C01 F3 1
DE6 C02 F3 1
DE6 C42 F3 1
DE6 C41 F3 1
DE6 C43 F3 1
DE6 C44 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DE6
_pdbe_chem_comp_rdkit_properties.exactmw 644.412
_pdbe_chem_comp_rdkit_properties.amw 644.822
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 13
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 10
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 46
_pdbe_chem_comp_rdkit_properties.NumAtoms 98
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 5
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.613
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 344.174
_pdbe_chem_comp_rdkit_properties.tpsa 259.440
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.380
_pdbe_chem_comp_rdkit_properties.CrippenMR 174.436
_pdbe_chem_comp_rdkit_properties.chi0v 22.013
_pdbe_chem_comp_rdkit_properties.chi1v 11.098
_pdbe_chem_comp_rdkit_properties.chi2v 3.844
_pdbe_chem_comp_rdkit_properties.chi3v 3.844
_pdbe_chem_comp_rdkit_properties.chi4v 2.190
_pdbe_chem_comp_rdkit_properties.chi0n 74.013
_pdbe_chem_comp_rdkit_properties.chi1n 36.412
_pdbe_chem_comp_rdkit_properties.chi2n 3.844
_pdbe_chem_comp_rdkit_properties.chi3n 3.844
_pdbe_chem_comp_rdkit_properties.chi4n 2.190
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.240
_pdbe_chem_comp_rdkit_properties.kappa1 7.726
_pdbe_chem_comp_rdkit_properties.kappa2 20.724
_pdbe_chem_comp_rdkit_properties.kappa3 14.243
_pdbe_chem_comp_rdkit_properties.Phi 3.481
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DE6 UniChem PDBe DE6
DE6 UniChem PubChem 146170534
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DE6 C10 -4.499 1.088 0.720 ETKDGv3 1
DE6 C15 -2.966 0.965 0.586 ETKDGv3 2
DE6 C17 -0.776 2.118 0.139 ETKDGv3 3
DE6 C20 2.146 2.878 0.968 ETKDGv3 4
DE6 C22 3.496 2.211 0.864 ETKDGv3 5
DE6 C24 4.684 4.338 -0.034 ETKDGv3 6
DE6 C26 6.688 4.114 1.554 ETKDGv3 7
DE6 C01 -3.096 -5.504 0.441 ETKDGv3 8
DE6 C02 -3.797 -4.629 -0.300 ETKDGv3 9
DE6 C03 -5.281 -4.790 -0.482 ETKDGv3 10
DE6 C05 -6.650 -2.705 0.024 ETKDGv3 11
DE6 C06 -7.185 -1.739 1.048 ETKDGv3 12
DE6 C07 -8.708 -1.629 0.927 ETKDGv3 13
DE6 C09 -5.145 -0.236 1.066 ETKDGv3 14
DE6 C12 -5.096 1.015 -1.786 ETKDGv3 15
DE6 C16 -2.292 2.302 0.247 ETKDGv3 16
DE6 C18 -0.062 3.444 -0.134 ETKDGv3 17
DE6 C23 4.441 2.823 -0.197 ETKDGv3 18
DE6 C25 5.314 4.759 1.306 ETKDGv3 19
DE6 C29 2.777 0.117 -0.479 ETKDGv3 20
DE6 C31 2.642 -1.387 -0.513 ETKDGv3 21
DE6 C32 3.883 -2.055 -1.148 ETKDGv3 22
DE6 C33 5.181 -1.859 -0.336 ETKDGv3 23
DE6 C34 6.049 -0.718 -0.896 ETKDGv3 24
DE6 C35 7.105 -0.230 0.110 ETKDGv3 25
DE6 C38 0.117 -1.666 -0.722 ETKDGv3 26
DE6 C40 -1.059 -2.194 -1.497 ETKDGv3 27
DE6 C41 -1.769 -3.316 -0.775 ETKDGv3 28
DE6 C42 -3.097 -3.479 -0.926 ETKDGv3 29
DE6 C43 -1.003 -4.331 -0.002 ETKDGv3 30
DE6 C44 -1.635 -5.353 0.585 ETKDGv3 31
DE6 N04 -5.993 -3.911 0.443 ETKDGv3 32
DE6 N08 -6.555 -0.428 0.871 ETKDGv3 33
DE6 N11 -5.093 1.657 -0.499 ETKDGv3 34
DE6 N13 -5.667 1.691 -2.909 ETKDGv3 35
DE6 N14 -4.595 -0.170 -1.933 ETKDGv3 36
DE6 N19 1.382 3.227 -0.197 ETKDGv3 37
DE6 N27 7.336 4.684 2.733 ETKDGv3 38
DE6 N28 3.336 0.761 0.682 ETKDGv3 39
DE6 N36 8.109 -1.252 0.403 ETKDGv3 40
DE6 N37 1.441 -1.766 -1.268 ETKDGv3 41
DE6 O21 1.657 3.073 2.114 ETKDGv3 42
DE6 O30 2.441 0.791 -1.488 ETKDGv3 43
DE6 O39 -0.066 -1.147 0.412 ETKDGv3 44
DE6 O45 -4.454 -1.163 1.574 ETKDGv3 45
DE6 O46 -6.768 -2.438 -1.204 ETKDGv3 46
DE6 H1 -4.708 1.778 1.567 ETKDGv3 47
DE6 H2 -2.551 0.598 1.551 ETKDGv3 48
DE6 H3 -2.713 0.218 -0.193 ETKDGv3 49
DE6 H4 -0.395 1.681 1.087 ETKDGv3 50
DE6 H5 -0.548 1.410 -0.688 ETKDGv3 51
DE6 H6 4.000 2.350 1.845 ETKDGv3 52
DE6 H7 5.349 4.675 -0.859 ETKDGv3 53
DE6 H8 3.723 4.881 -0.160 ETKDGv3 54
DE6 H9 7.345 4.272 0.670 ETKDGv3 55
DE6 H10 6.574 3.021 1.710 ETKDGv3 56
DE6 H11 -3.586 -6.342 0.922 ETKDGv3 57
DE6 H12 -5.591 -5.841 -0.290 ETKDGv3 58
DE6 H13 -5.551 -4.569 -1.536 ETKDGv3 59
DE6 H14 -6.957 -2.108 2.072 ETKDGv3 60
DE6 H15 -9.098 -0.939 1.705 ETKDGv3 61
DE6 H16 -8.997 -1.241 -0.073 ETKDGv3 62
DE6 H17 -9.176 -2.626 1.077 ETKDGv3 63
DE6 H18 -2.680 2.688 -0.720 ETKDGv3 64
DE6 H19 -2.523 3.042 1.045 ETKDGv3 65
DE6 H20 -0.295 4.185 0.661 ETKDGv3 66
DE6 H21 -0.413 3.856 -1.105 ETKDGv3 67
DE6 H22 5.415 2.297 -0.159 ETKDGv3 68
DE6 H23 4.046 2.652 -1.218 ETKDGv3 69
DE6 H24 5.435 5.864 1.287 ETKDGv3 70
DE6 H25 4.626 4.525 2.146 ETKDGv3 71
DE6 H26 2.537 -1.773 0.525 ETKDGv3 72
DE6 H27 3.682 -3.147 -1.205 ETKDGv3 73
DE6 H28 4.016 -1.702 -2.195 ETKDGv3 74
DE6 H29 5.774 -2.799 -0.387 ETKDGv3 75
DE6 H30 4.946 -1.688 0.736 ETKDGv3 76
DE6 H31 6.547 -1.055 -1.831 ETKDGv3 77
DE6 H32 5.409 0.145 -1.166 ETKDGv3 78
DE6 H33 7.618 0.659 -0.316 ETKDGv3 79
DE6 H34 6.613 0.093 1.054 ETKDGv3 80
DE6 H35 -1.754 -1.349 -1.688 ETKDGv3 81
DE6 H36 -0.727 -2.573 -2.486 ETKDGv3 82
DE6 H37 -3.670 -2.780 -1.523 ETKDGv3 83
DE6 H38 0.072 -4.250 0.095 ETKDGv3 84
DE6 H39 -1.074 -6.082 1.154 ETKDGv3 85
DE6 H40 -5.935 -4.129 1.463 ETKDGv3 86
DE6 H41 -7.137 0.390 0.577 ETKDGv3 87
DE6 H42 -5.547 2.595 -0.420 ETKDGv3 88
DE6 H43 -6.075 2.646 -2.799 ETKDGv3 89
DE6 H44 -5.686 1.244 -3.852 ETKDGv3 90
DE6 H45 -4.590 -0.655 -2.858 ETKDGv3 91
DE6 H46 1.849 3.309 -1.126 ETKDGv3 92
DE6 H47 7.468 5.711 2.584 ETKDGv3 93
DE6 H48 6.704 4.560 3.558 ETKDGv3 94
DE6 H50 3.612 0.154 1.487 ETKDGv3 95
DE6 H51 7.656 -2.041 0.918 ETKDGv3 96
DE6 H52 8.491 -1.627 -0.496 ETKDGv3 97
DE6 H54 1.549 -2.142 -2.237 ETKDGv3 98
#