data_DIC
#
_chem_comp.id DIC
_chem_comp.name 3,4-DICHLOROISOCOUMARIN
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H4 Cl2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 215.033
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DIC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DIC C1 C1 C 0 1 Y N N N N N 17.425 19.231 18.370 0.698 -2.032 0.101 C1 DIC 1
DIC C2 C2 C 0 1 Y N N N N N 17.375 18.787 19.697 1.809 -2.879 0.068 C2 DIC 2
DIC C3 C3 C 0 1 Y N N N N N 17.559 17.426 20.004 3.109 -2.368 -0.092 C3 DIC 3
DIC C4 C4 C 0 1 Y N N N N N 17.802 16.506 18.916 3.257 -0.979 -0.218 C4 DIC 4
DIC C5 C5 C 0 1 Y N N N N N 17.843 16.979 17.589 2.141 -0.129 -0.185 C5 DIC 5
DIC C6 C6 C 0 1 Y N N N N N 17.655 18.335 17.324 0.863 -0.658 -0.026 C6 DIC 6
DIC C7 C7 C 0 1 Y N N N N N 18.041 15.057 19.172 4.595 -0.369 -0.389 C7 DIC 7
DIC O7 O7 O 0 1 N N N N N N 18.651 14.563 20.128 4.743 0.841 -0.499 O7 DIC 8
DIC C8 C8 C 0 1 Y N N N N N 17.470 16.975 21.499 4.310 -3.217 -0.134 C8 DIC 9
DIC C9 C9 C 0 1 Y N N N N N 16.508 15.793 21.775 5.506 -2.627 -0.290 C9 DIC 10
DIC O1 O1 O 0 1 Y N N N N N ? ? ? 5.651 -1.229 -0.415 O1 DIC 11
DIC CL1 CL1 CL 0 0 N N N N N N ? ? ? 4.144 -4.934 0.019 CL1 DIC 12
DIC CL2 CL2 CL 0 0 N N N N N N ? ? ? 6.990 -3.531 -0.351 CL2 DIC 13
DIC H1 H1 H 0 1 N N N N N N 17.284 20.279 18.153 -0.297 -2.450 0.226 H1 DIC 14
DIC H2 H2 H 0 1 N N N N N N 17.194 19.495 20.492 1.624 -3.945 0.171 H2 DIC 15
DIC H5 H5 H 0 1 N N N N N N 18.020 16.290 16.776 2.249 0.948 -0.282 H5 DIC 16
DIC H6 H6 H 0 1 N N N N N N 17.687 18.694 16.306 -0.000 0.000 -0.000 H6 DIC 17
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DIC C1 C2 DOUB Y N 1
DIC C1 C6 SING Y N 2
DIC C1 H1 SING N N 3
DIC C2 C3 SING Y N 4
DIC C2 H2 SING N N 5
DIC C3 C4 DOUB Y N 6
DIC C3 C8 SING Y N 7
DIC C4 C5 SING Y N 8
DIC C4 C7 SING Y N 9
DIC C5 C6 DOUB Y N 10
DIC C5 H5 SING N N 11
DIC C6 H6 SING N N 12
DIC C7 O7 DOUB N N 13
DIC C7 O1 SING Y N 14
DIC C8 C9 DOUB Y N 15
DIC C8 CL1 SING N N 16
DIC C9 O1 SING Y N 17
DIC C9 CL2 SING N N 18
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DIC SMILES ACDLabs 10.04 ClC=1OC(=O)c2ccccc2C=1Cl
DIC SMILES_CANONICAL CACTVS 3.341 ClC1=C(Cl)c2ccccc2C(=O)O1
DIC SMILES CACTVS 3.341 ClC1=C(Cl)c2ccccc2C(=O)O1
DIC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)C(=C(OC2=O)Cl)Cl
DIC SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)C(=C(OC2=O)Cl)Cl
DIC InChI InChI 1.03 InChI=1S/C9H4Cl2O2/c10-7-5-3-1-2-4-6(5)9(12)13-8(7)11/h1-4H
DIC InChIKey InChI 1.03 SUGXUUGGLDCZKB-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DIC "SYSTEMATIC NAME" ACDLabs 10.04 3,4-dichloro-1H-isochromen-1-one
DIC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 3,4-dichloroisochromen-1-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DIC 'Create component' 1999-07-08 RCSB
DIC 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id DIC
_pdbe_chem_comp_drugbank_details.drugbank_id DB04459
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 3,4-Dichloroisocoumarin
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DIC
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04459
_pdbe_chem_comp_drugbank_classification.parent 'Isocoumarins and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Isocoumarins and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Phenylpropanoids and polyketides'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as isocoumarins and derivatives. These are polycyclic compounds containing an isochromane which bears a ketone at the carbon C1.'
#
_pdbe_chem_comp_drugbank_targets.comp_id DIC
_pdbe_chem_comp_drugbank_targets.drugbank_id DB04459
_pdbe_chem_comp_drugbank_targets.name 'Complement factor D'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P00746
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DIC C1 C 3.000 0.781 1
DIC C2 C 4.359 1.552 2
DIC C3 C 5.700 0.750 3
DIC C4 C 5.700 -0.750 4
DIC C5 C 4.359 -1.552 5
DIC C6 C 3.000 -0.781 6
DIC C7 C 6.999 -1.500 7
DIC O7 O 6.999 -3.000 8
DIC C8 C 6.999 1.500 9
DIC C9 C 8.298 0.750 10
DIC O1 O 8.298 -0.750 11
DIC CL1 Cl 6.999 3.000 12
DIC CL2 Cl 9.597 1.500 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DIC C1 C2 DOUBLE NONE 1
DIC C1 C6 SINGLE NONE 2
DIC C2 C3 SINGLE NONE 3
DIC C3 C4 DOUBLE NONE 4
DIC C3 C8 SINGLE NONE 5
DIC C4 C5 SINGLE NONE 6
DIC C4 C7 SINGLE NONE 7
DIC C5 C6 DOUBLE NONE 8
DIC C7 O7 DOUBLE NONE 9
DIC C7 O1 SINGLE NONE 10
DIC C8 C9 DOUBLE NONE 11
DIC C8 CL1 SINGLE NONE 12
DIC C9 O1 SINGLE NONE 13
DIC C9 CL2 SINGLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DIC MurckoScaffold S1 scaffold O=c1occc2ccccc12 InChI=1S/C9H6O2/c10-9-8-4-2-1-3-7(8)5-6-11-9/h1-6H IQZZFVDIZRWADY-UHFFFAOYSA-N
DIC phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DIC C1 S1 1
DIC C2 S1 1
DIC C3 S1 1
DIC C4 S1 1
DIC C5 S1 1
DIC C6 S1 1
DIC C7 S1 1
DIC O7 S1 1
DIC C8 S1 1
DIC C9 S1 1
DIC O1 S1 1
DIC C1 F1 1
DIC C2 F1 1
DIC C3 F1 1
DIC C4 F1 1
DIC C5 F1 1
DIC C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DIC
_pdbe_chem_comp_rdkit_properties.exactmw 213.959
_pdbe_chem_comp_rdkit_properties.amw 215.035
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 17
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 89.306
_pdbe_chem_comp_rdkit_properties.tpsa 30.210
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.571
_pdbe_chem_comp_rdkit_properties.CrippenMR 50.406
_pdbe_chem_comp_rdkit_properties.chi0v 7.584
_pdbe_chem_comp_rdkit_properties.chi1v 3.996
_pdbe_chem_comp_rdkit_properties.chi2v 2.189
_pdbe_chem_comp_rdkit_properties.chi3v 2.189
_pdbe_chem_comp_rdkit_properties.chi4v 1.251
_pdbe_chem_comp_rdkit_properties.chi0n 10.072
_pdbe_chem_comp_rdkit_properties.chi1n 5.240
_pdbe_chem_comp_rdkit_properties.chi2n 1.466
_pdbe_chem_comp_rdkit_properties.chi3n 1.466
_pdbe_chem_comp_rdkit_properties.chi4n 0.906
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.990
_pdbe_chem_comp_rdkit_properties.kappa1 5.032
_pdbe_chem_comp_rdkit_properties.kappa2 3.053
_pdbe_chem_comp_rdkit_properties.kappa3 1.321
_pdbe_chem_comp_rdkit_properties.Phi 1.182
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DIC UniChem ChEMBL CHEMBL24983
DIC UniChem DrugBank DB04459
DIC UniChem PDBe DIC
DIC UniChem ChEBI 109540
DIC UniChem ZINC ZINC000000388510
DIC UniChem eMolecules 500648
DIC UniChem fdasrs SD08W1HH6E
DIC UniChem HMDB HMDB0246026
DIC UniChem 'PubChem TPHARMA' 14797813
DIC UniChem LINCS LSM-20945
DIC UniChem ACTor 51050-59-0
DIC UniChem Nikkaji J425.303E
DIC UniChem BindingDb 50199883
DIC UniChem 'EPA CompTox Dashboard' DTXSID70199056
DIC UniChem BRENDA 1040
DIC UniChem BRENDA 114895
DIC UniChem BRENDA 129774
DIC UniChem BRENDA 234948
DIC UniChem BRENDA 46009
DIC UniChem BRENDA 8635
DIC UniChem ChemicalBook CB3278415
DIC UniChem 'Probes And Drugs' PD002743
DIC UniChem PubChem 1609
DIC UniChem SureChEMBL SCHEMBL106901
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DIC C1 -2.306 -0.459 -0.280 ETKDGv3 1
DIC C2 -1.177 -1.162 -0.431 ETKDGv3 2
DIC C3 0.145 -0.534 -0.157 ETKDGv3 3
DIC C4 0.185 0.757 0.246 ETKDGv3 4
DIC C5 -1.074 1.526 0.410 ETKDGv3 5
DIC C6 -2.252 0.947 0.160 ETKDGv3 6
DIC C7 1.493 1.378 0.517 ETKDGv3 7
DIC O7 1.579 2.576 0.895 ETKDGv3 8
DIC C8 1.411 -1.308 -0.322 ETKDGv3 9
DIC C9 2.596 -0.718 -0.068 ETKDGv3 10
DIC O1 2.651 0.618 0.350 ETKDGv3 11
DIC CL1 1.358 -2.992 -0.849 ETKDGv3 12
DIC CL2 4.116 -1.584 -0.247 ETKDGv3 13
DIC H1 -3.264 -0.922 -0.481 ETKDGv3 14
DIC H2 -1.245 -2.191 -0.755 ETKDGv3 15
DIC H5 -1.046 2.560 0.733 ETKDGv3 16
DIC H6 -3.170 1.508 0.280 ETKDGv3 17
#