data_DJ1
#
_chem_comp.id DJ1
_chem_comp.name
"tert-butyl [(2S)-1-{[(2R)-2-(cyclopentylamino)-3-oxo-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}-3-(1H-indol-3-yl)propan-2-yl]carbamate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H41 N5 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-10-25
_chem_comp.pdbx_modified_date 2017-12-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 551.743
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DJ1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6BDK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DJ1 C15 C1 C 0 1 N N N N N N -15.861 -35.541 -6.452 -2.862 2.752 -1.422 C15 DJ1 1
DJ1 C17 C2 C 0 1 N N N N N N -14.465 -33.580 -7.069 -2.835 5.094 -2.208 C17 DJ1 2
DJ1 C20 C3 C 0 1 N N N N N N -17.912 -32.943 -6.619 -4.095 0.573 0.511 C20 DJ1 3
DJ1 C12 C4 C 0 1 N N N N N N -19.271 -34.879 -7.545 -1.770 -0.283 0.402 C12 DJ1 4
DJ1 N14 N1 N 0 1 N N N N N N -17.302 -35.398 -6.322 -2.302 2.006 -0.287 N14 DJ1 5
DJ1 C16 C5 C 0 1 N N N N N N -15.091 -34.319 -5.854 -1.928 3.914 -1.818 C16 DJ1 6
DJ1 C18 C6 C 0 1 N N N N N N -14.376 -34.528 -8.200 -4.289 4.608 -2.036 C18 DJ1 7
DJ1 C19 C7 C 0 1 N N N N N N -15.490 -35.631 -7.929 -4.184 3.450 -1.013 C19 DJ1 8
DJ1 C01 C8 C 0 1 N N N N N N -16.252 -30.816 -13.703 4.800 2.033 2.540 C01 DJ1 9
DJ1 C02 C9 C 0 1 N N N N N N -17.075 -29.728 -13.000 3.774 2.691 1.615 C02 DJ1 10
DJ1 C03 C10 C 0 1 N N N N N N -16.148 -28.694 -12.362 2.434 2.812 2.345 C03 DJ1 11
DJ1 C04 C11 C 0 1 N N N N N N -17.940 -28.996 -14.039 4.266 4.084 1.217 C04 DJ1 12
DJ1 C06 C12 C 0 1 N N N N N N -17.650 -31.644 -11.670 3.107 0.640 0.595 C06 DJ1 13
DJ1 C09 C13 C 0 1 N N S N N N -19.162 -33.534 -11.168 2.218 -1.445 -0.301 C09 DJ1 14
DJ1 C10 C14 C 0 1 N N N N N N -19.348 -32.893 -9.816 0.896 -1.258 0.447 C10 DJ1 15
DJ1 C13 C15 C 0 1 N N R N N N -17.851 -34.394 -7.262 -2.804 0.626 -0.266 C13 DJ1 16
DJ1 C23 C16 C 0 1 N N N N N N -18.090 -30.429 -7.031 -6.210 -0.498 1.074 C23 DJ1 17
DJ1 C24 C17 C 0 1 Y N N N N N -18.715 -29.632 -8.135 -6.985 -1.728 0.677 C24 DJ1 18
DJ1 C25 C18 C 0 1 Y N N N N N -18.020 -29.081 -9.190 -6.801 -2.923 1.356 C25 DJ1 19
DJ1 C26 C19 C 0 1 Y N N N N N -18.640 -28.390 -10.205 -7.535 -4.029 0.956 C26 DJ1 20
DJ1 C27 C20 C 0 1 Y N N N N N -20.002 -28.259 -10.203 -8.420 -3.905 -0.098 C27 DJ1 21
DJ1 C29 C21 C 0 1 Y N N N N N -20.065 -29.458 -8.226 -7.892 -1.679 -0.365 C29 DJ1 22
DJ1 C30 C22 C 0 1 N N N N N N -18.192 -34.811 -10.964 3.134 -2.368 0.506 C30 DJ1 23
DJ1 C31 C23 C 0 1 Y N N N N N -17.651 -35.461 -12.251 4.384 -2.651 -0.286 C31 DJ1 24
DJ1 C32 C24 C 0 1 Y N N N N N -17.990 -35.106 -13.532 4.605 -3.712 -1.078 C32 DJ1 25
DJ1 C34 C25 C 0 1 Y N N N N N -16.510 -36.806 -13.799 6.481 -2.481 -1.201 C34 DJ1 26
DJ1 C35 C26 C 0 1 Y N N N N N -16.692 -36.567 -12.366 5.588 -1.817 -0.341 C35 DJ1 27
DJ1 C36 C27 C 0 1 Y N N N N N -15.939 -37.415 -11.503 5.960 -0.610 0.253 C36 DJ1 28
DJ1 C37 C28 C 0 1 Y N N N N N -15.073 -38.418 -11.962 7.192 -0.078 -0.006 C37 DJ1 29
DJ1 C38 C29 C 0 1 Y N N N N N -14.920 -38.623 -13.364 8.076 -0.729 -0.854 C38 DJ1 30
DJ1 C39 C30 C 0 1 Y N N N N N -15.635 -37.822 -14.259 7.730 -1.921 -1.451 C39 DJ1 31
DJ1 N08 N2 N 0 1 N N N N N N -18.622 -32.578 -12.089 2.868 -0.144 -0.476 N08 DJ1 32
DJ1 N22 N3 N 0 1 N N N N N N -17.988 -31.801 -7.481 -4.955 -0.447 0.319 N22 DJ1 33
DJ1 N28 N4 N 0 1 Y N N N N N -20.666 -28.785 -9.206 -8.569 -2.752 -0.722 N28 DJ1 34
DJ1 N33 N5 N 0 1 Y N N N N N -17.325 -35.877 -14.438 5.853 -3.628 -1.632 N33 DJ1 35
DJ1 O05 O1 O 0 1 N N N N N N -17.948 -30.342 -12.084 3.605 1.879 0.424 O05 DJ1 36
DJ1 O07 O2 O 0 1 N N N N N N -16.762 -31.864 -10.855 2.873 0.228 1.713 O07 DJ1 37
DJ1 O21 O3 O 0 1 N N N N N N -17.873 -32.757 -5.458 -4.360 1.448 1.308 O21 DJ1 38
DJ1 S11 S1 S 0 1 N N N N N N -20.174 -34.153 -8.921 -0.236 -0.266 -0.565 S11 DJ1 39
DJ1 H1 H1 H 0 1 N N N N N N -15.524 -36.454 -5.939 -3.026 2.088 -2.271 H1 DJ1 40
DJ1 H2 H2 H 0 1 N N N N N N -13.459 -33.220 -6.806 -2.646 5.944 -1.552 H2 DJ1 41
DJ1 H3 H3 H 0 1 N N N N N N -15.098 -32.726 -7.350 -2.656 5.376 -3.246 H3 DJ1 42
DJ1 H4 H4 H 0 1 N N N N N N -19.863 -34.695 -6.636 -1.568 0.077 1.411 H4 DJ1 43
DJ1 H5 H5 H 0 1 N N N N N N -17.514 -35.114 -5.387 -2.496 2.475 0.585 H5 DJ1 44
DJ1 H7 H7 H 0 1 N N N N N N -14.304 -34.661 -5.166 -1.298 4.192 -0.973 H7 DJ1 45
DJ1 H8 H8 H 0 1 N N N N N N -15.784 -33.655 -5.317 -1.309 3.623 -2.666 H8 DJ1 46
DJ1 H9 H9 H 0 1 N N N N N N -13.379 -34.991 -8.234 -4.915 5.409 -1.642 H9 DJ1 47
DJ1 H10 H10 H 0 1 N N N N N N -14.573 -34.010 -9.150 -4.685 4.245 -2.984 H10 DJ1 48
DJ1 H11 H11 H 0 1 N N N N N N -16.375 -35.435 -8.553 -5.028 2.767 -1.114 H11 DJ1 49
DJ1 H12 H12 H 0 1 N N N N N N -15.094 -36.631 -8.158 -4.118 3.837 0.004 H12 DJ1 50
DJ1 H13 H13 H 0 1 N N N N N N -15.631 -31.343 -12.963 4.450 1.041 2.823 H13 DJ1 51
DJ1 H14 H14 H 0 1 N N N N N N -16.931 -31.533 -14.189 5.755 1.947 2.020 H14 DJ1 52
DJ1 H15 H15 H 0 1 N N N N N N -15.604 -30.353 -14.462 4.927 2.643 3.434 H15 DJ1 53
DJ1 H16 H16 H 0 1 N N N N N N -15.512 -29.185 -11.611 2.533 3.515 3.172 H16 DJ1 54
DJ1 H17 H17 H 0 1 N N N N N N -15.514 -28.241 -13.139 1.675 3.172 1.651 H17 DJ1 55
DJ1 H18 H18 H 0 1 N N N N N N -16.750 -27.911 -11.878 2.141 1.836 2.730 H18 DJ1 56
DJ1 H19 H19 H 0 1 N N N N N N -18.532 -28.215 -13.539 5.220 3.998 0.698 H19 DJ1 57
DJ1 H20 H20 H 0 1 N N N N N N -17.290 -28.535 -14.797 3.535 4.553 0.559 H20 DJ1 58
DJ1 H21 H21 H 0 1 N N N N N N -18.617 -29.715 -14.524 4.393 4.694 2.112 H21 DJ1 59
DJ1 H22 H22 H 0 1 N N N N N N -20.133 -33.903 -11.529 2.023 -1.888 -1.277 H22 DJ1 60
DJ1 H23 H23 H 0 1 N N N N N N -18.380 -32.645 -9.355 0.449 -2.232 0.643 H23 DJ1 61
DJ1 H24 H24 H 0 1 N N N N N N -19.964 -31.984 -9.887 1.082 -0.747 1.391 H24 DJ1 62
DJ1 H25 H25 H 0 1 N N N N N N -17.265 -34.361 -8.192 -2.980 0.287 -1.287 H25 DJ1 63
DJ1 H26 H26 H 0 1 N N N N N N -17.089 -30.034 -6.804 -6.802 0.390 0.855 H26 DJ1 64
DJ1 H27 H27 H 0 1 N N N N N N -18.718 -30.376 -6.129 -5.991 -0.535 2.141 H27 DJ1 65
DJ1 H28 H28 H 0 1 N N N N N N -16.947 -29.196 -9.221 -6.102 -2.991 2.176 H28 DJ1 66
DJ1 H29 H29 H 0 1 N N N N N N -18.054 -27.953 -11.000 -7.417 -4.976 1.462 H29 DJ1 67
DJ1 H30 H30 H 0 1 N N N N N N -20.513 -27.738 -10.999 -8.995 -4.762 -0.416 H30 DJ1 68
DJ1 H31 H31 H 0 1 N N N N N N -20.685 -29.893 -7.456 -8.044 -0.751 -0.896 H31 DJ1 69
DJ1 H32 H32 H 0 1 N N N N N N -18.756 -35.577 -10.412 3.400 -1.885 1.446 H32 DJ1 70
DJ1 H33 H33 H 0 1 N N N N N N -17.330 -34.486 -10.363 2.615 -3.304 0.712 H33 DJ1 71
DJ1 H34 H34 H 0 1 N N N N N N -18.688 -34.323 -13.788 3.902 -4.512 -1.253 H34 DJ1 72
DJ1 H35 H35 H 0 1 N N N N N N -16.041 -37.278 -10.437 5.276 -0.098 0.914 H35 DJ1 73
DJ1 H36 H36 H 0 1 N N N N N N -14.527 -39.030 -11.259 7.479 0.856 0.454 H36 DJ1 74
DJ1 H37 H37 H 0 1 N N N N N N -14.257 -39.392 -13.732 9.046 -0.295 -1.050 H37 DJ1 75
DJ1 H38 H38 H 0 1 N N N N N N -15.519 -37.980 -15.321 8.426 -2.420 -2.109 H38 DJ1 76
DJ1 H39 H39 H 0 1 N N N N N N -18.937 -32.573 -13.038 3.127 0.154 -1.362 H39 DJ1 77
DJ1 H40 H40 H 0 1 N N N N N N -17.969 -31.964 -8.467 -4.744 -1.147 -0.318 H40 DJ1 78
DJ1 H41 H41 H 0 1 N N N N N N -17.411 -35.787 -15.430 6.239 -4.280 -2.238 H41 DJ1 79
DJ1 H42 H42 H 0 1 N N N N N N -19.212 -35.961 -7.732 -2.158 -1.300 0.451 H42 DJ1 80
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DJ1 N33 C34 SING Y N 1
DJ1 N33 C32 SING Y N 2
DJ1 C39 C34 DOUB Y N 3
DJ1 C39 C38 SING Y N 4
DJ1 C04 C02 SING N N 5
DJ1 C34 C35 SING Y N 6
DJ1 C01 C02 SING N N 7
DJ1 C32 C31 DOUB Y N 8
DJ1 C38 C37 DOUB Y N 9
DJ1 C02 C03 SING N N 10
DJ1 C02 O05 SING N N 11
DJ1 C35 C31 SING Y N 12
DJ1 C35 C36 DOUB Y N 13
DJ1 C31 C30 SING N N 14
DJ1 N08 C06 SING N N 15
DJ1 N08 C09 SING N N 16
DJ1 O05 C06 SING N N 17
DJ1 C37 C36 SING Y N 18
DJ1 C06 O07 DOUB N N 19
DJ1 C09 C30 SING N N 20
DJ1 C09 C10 SING N N 21
DJ1 C26 C27 DOUB Y N 22
DJ1 C26 C25 SING Y N 23
DJ1 C27 N28 SING Y N 24
DJ1 C10 S11 SING N N 25
DJ1 N28 C29 DOUB Y N 26
DJ1 C25 C24 DOUB Y N 27
DJ1 S11 C12 SING N N 28
DJ1 C29 C24 SING Y N 29
DJ1 C18 C19 SING N N 30
DJ1 C18 C17 SING N N 31
DJ1 C24 C23 SING N N 32
DJ1 C19 C15 SING N N 33
DJ1 C12 C13 SING N N 34
DJ1 N22 C23 SING N N 35
DJ1 N22 C20 SING N N 36
DJ1 C13 C20 SING N N 37
DJ1 C13 N14 SING N N 38
DJ1 C17 C16 SING N N 39
DJ1 C20 O21 DOUB N N 40
DJ1 C15 N14 SING N N 41
DJ1 C15 C16 SING N N 42
DJ1 C15 H1 SING N N 43
DJ1 C17 H2 SING N N 44
DJ1 C17 H3 SING N N 45
DJ1 C12 H4 SING N N 46
DJ1 N14 H5 SING N N 47
DJ1 C16 H7 SING N N 48
DJ1 C16 H8 SING N N 49
DJ1 C18 H9 SING N N 50
DJ1 C18 H10 SING N N 51
DJ1 C19 H11 SING N N 52
DJ1 C19 H12 SING N N 53
DJ1 C01 H13 SING N N 54
DJ1 C01 H14 SING N N 55
DJ1 C01 H15 SING N N 56
DJ1 C03 H16 SING N N 57
DJ1 C03 H17 SING N N 58
DJ1 C03 H18 SING N N 59
DJ1 C04 H19 SING N N 60
DJ1 C04 H20 SING N N 61
DJ1 C04 H21 SING N N 62
DJ1 C09 H22 SING N N 63
DJ1 C10 H23 SING N N 64
DJ1 C10 H24 SING N N 65
DJ1 C13 H25 SING N N 66
DJ1 C23 H26 SING N N 67
DJ1 C23 H27 SING N N 68
DJ1 C25 H28 SING N N 69
DJ1 C26 H29 SING N N 70
DJ1 C27 H30 SING N N 71
DJ1 C29 H31 SING N N 72
DJ1 C30 H32 SING N N 73
DJ1 C30 H33 SING N N 74
DJ1 C32 H34 SING N N 75
DJ1 C36 H35 SING N N 76
DJ1 C37 H36 SING N N 77
DJ1 C38 H37 SING N N 78
DJ1 C39 H38 SING N N 79
DJ1 N08 H39 SING N N 80
DJ1 N22 H40 SING N N 81
DJ1 N33 H41 SING N N 82
DJ1 C12 H42 SING N N 83
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DJ1 SMILES ACDLabs 12.01 C4(NC(C(=O)NCc1cccnc1)CSCC(Cc2cnc3c2cccc3)NC(=O)OC(C)(C)C)CCCC4
DJ1 InChI InChI 1.03 InChI=1S/C30H41N5O3S/c1-30(2,3)38-29(37)35-24(15-22-18-32-26-13-7-6-12-25(22)26)19-39-20-27(34-23-10-4-5-11-23)28(36)33-17-21-9-8-14-31-16-21/h6-9,12-14,16,18,23-24,27,32,34H,4-5,10-11,15,17,19-20H2,1-3H3,(H,33,36)(H,35,37)/t24-,27-/m0/s1
DJ1 InChIKey InChI 1.03 AQDOXNFDADPPBW-IGKIAQTJSA-N
DJ1 SMILES_CANONICAL CACTVS 3.385 CC(C)(C)OC(=O)N[C@H](CSC[C@H](NC1CCCC1)C(=O)NCc2cccnc2)Cc3c[nH]c4ccccc34
DJ1 SMILES CACTVS 3.385 CC(C)(C)OC(=O)N[CH](CSC[CH](NC1CCCC1)C(=O)NCc2cccnc2)Cc3c[nH]c4ccccc34
DJ1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC(C)(C)OC(=O)N[C@@H](Cc1c[nH]c2c1cccc2)CSC[C@@H](C(=O)NCc3cccnc3)NC4CCCC4
DJ1 SMILES "OpenEye OEToolkits" 2.0.6 CC(C)(C)OC(=O)NC(Cc1c[nH]c2c1cccc2)CSCC(C(=O)NCc3cccnc3)NC4CCCC4
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DJ1 "SYSTEMATIC NAME" ACDLabs 12.01 "tert-butyl [(2S)-1-{[(2R)-2-(cyclopentylamino)-3-oxo-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}-3-(1H-indol-3-yl)propan-2-yl]carbamate"
DJ1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{tert}-butyl ~{N}-[(2~{S})-1-[(2~{R})-2-(cyclopentylamino)-3-oxidanylidene-3-(pyridin-3-ylmethylamino)propyl]sulfanyl-3-(1~{H}-indol-3-yl)propan-2-yl]carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DJ1 'Create component' 2017-10-25 RCSB
DJ1 'Initial release' 2017-12-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DJ1 C15 C 14.426 -3.334 1
DJ1 C17 C 12.996 -5.295 2
DJ1 C20 C 14.356 0.634 3
DJ1 C12 C 12.422 -1.101 4
DJ1 N14 N 14.892 -1.908 5
DJ1 C16 C 12.998 -3.795 6
DJ1 C18 C 14.422 -5.761 7
DJ1 C19 C 15.306 -4.549 8
DJ1 C01 C 12.509 5.761 9
DJ1 C02 C 12.819 4.293 10
DJ1 C03 C 13.128 2.825 11
DJ1 C04 C 14.287 4.602 12
DJ1 C06 C 10.885 2.558 13
DJ1 C09 C 8.951 0.823 14
DJ1 C10 C 9.953 -0.294 15
DJ1 C13 C 13.890 -0.791 16
DJ1 C23 C 16.290 2.369 17
DJ1 C24 C 17.758 2.679 18
DJ1 C25 C 18.759 1.562 19
DJ1 C26 C 20.227 1.872 20
DJ1 C27 C 20.693 3.297 21
DJ1 C29 C 18.224 4.105 22
DJ1 C30 C 7.483 0.513 23
DJ1 C31 C 7.018 -0.912 24
DJ1 C32 C 7.893 -2.119 25
DJ1 C34 C 5.598 -2.869 26
DJ1 C35 C 5.598 -1.369 27
DJ1 C36 C 4.299 -0.620 28
DJ1 C37 C 3.000 -1.369 29
DJ1 C38 C 3.000 -2.869 30
DJ1 C39 C 4.299 -3.619 31
DJ1 N08 N 9.417 2.248 32
DJ1 N22 N 15.824 0.944 33
DJ1 N28 N 19.691 4.414 34
DJ1 N33 N 7.018 -3.326 35
DJ1 O05 O 11.351 3.984 36
DJ1 O07 O 11.887 1.442 37
DJ1 O21 O 13.354 1.751 38
DJ1 S11 S 11.421 0.016 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DJ1 N33 C34 SINGLE NONE 1
DJ1 N33 C32 SINGLE NONE 2
DJ1 C39 C34 DOUBLE NONE 3
DJ1 C39 C38 SINGLE NONE 4
DJ1 C04 C02 SINGLE NONE 5
DJ1 C34 C35 SINGLE NONE 6
DJ1 C01 C02 SINGLE NONE 7
DJ1 C32 C31 DOUBLE NONE 8
DJ1 C38 C37 DOUBLE NONE 9
DJ1 C02 C03 SINGLE NONE 10
DJ1 C02 O05 SINGLE NONE 11
DJ1 C35 C31 SINGLE NONE 12
DJ1 C35 C36 DOUBLE NONE 13
DJ1 C31 C30 SINGLE NONE 14
DJ1 N08 C06 SINGLE NONE 15
DJ1 N08 C09 SINGLE NONE 16
DJ1 O05 C06 SINGLE NONE 17
DJ1 C37 C36 SINGLE NONE 18
DJ1 C06 O07 DOUBLE NONE 19
DJ1 C09 C30 SINGLE BEGINDASH 20
DJ1 C09 C10 SINGLE NONE 21
DJ1 C26 C27 SINGLE NONE 22
DJ1 C26 C25 DOUBLE NONE 23
DJ1 C27 N28 DOUBLE NONE 24
DJ1 C10 S11 SINGLE NONE 25
DJ1 N28 C29 SINGLE NONE 26
DJ1 C25 C24 SINGLE NONE 27
DJ1 S11 C12 SINGLE NONE 28
DJ1 C29 C24 DOUBLE NONE 29
DJ1 C18 C19 SINGLE NONE 30
DJ1 C18 C17 SINGLE NONE 31
DJ1 C24 C23 SINGLE NONE 32
DJ1 C19 C15 SINGLE NONE 33
DJ1 C13 C12 SINGLE BEGINWEDGE 34
DJ1 N22 C23 SINGLE NONE 35
DJ1 N22 C20 SINGLE NONE 36
DJ1 C13 C20 SINGLE NONE 37
DJ1 C13 N14 SINGLE NONE 38
DJ1 C17 C16 SINGLE NONE 39
DJ1 C20 O21 DOUBLE NONE 40
DJ1 C15 N14 SINGLE NONE 41
DJ1 C15 C16 SINGLE NONE 42
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DJ1 MurckoScaffold S1 scaffold 'O=C(NCc1cccnc1)[C@H](CSCCCc1c[nH]c2ccccc12)NC1CCCC1' InChI=1S/C25H32N4OS/c30-25(28-16-19-7-5-13-26-15-19)24(29-21-9-1-2-10-21)18-31-14-6-8-20-17-27-23-12-4-3-11-22(20)23/h3-5,7,11-13,15,17,21,24,27,29H,1-2,6,8-10,14,16,18H2,(H,28,30)/t24-/m0/s1 CCIPTRRHLKXSRC-DEOSSOPVSA-N
DJ1 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
DJ1 cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
DJ1 indole F3 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
DJ1 peptide F4 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
DJ1 phenyl F5 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
DJ1 pyridine F6 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
DJ1 pyrrole F7 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DJ1 C15 S1 1
DJ1 C17 S1 1
DJ1 C20 S1 1
DJ1 C12 S1 1
DJ1 N14 S1 1
DJ1 C16 S1 1
DJ1 C18 S1 1
DJ1 C19 S1 1
DJ1 C09 S1 1
DJ1 C10 S1 1
DJ1 C13 S1 1
DJ1 C23 S1 1
DJ1 C24 S1 1
DJ1 C25 S1 1
DJ1 C26 S1 1
DJ1 C27 S1 1
DJ1 C29 S1 1
DJ1 C30 S1 1
DJ1 C31 S1 1
DJ1 C32 S1 1
DJ1 C34 S1 1
DJ1 C35 S1 1
DJ1 C36 S1 1
DJ1 C37 S1 1
DJ1 C38 S1 1
DJ1 C39 S1 1
DJ1 N22 S1 1
DJ1 N28 S1 1
DJ1 N33 S1 1
DJ1 O21 S1 1
DJ1 S11 S1 1
DJ1 N22 F1 1
DJ1 C20 F1 1
DJ1 O21 F1 1
DJ1 C13 F1 1
DJ1 C15 F2 1
DJ1 C19 F2 1
DJ1 C18 F2 1
DJ1 C17 F2 1
DJ1 C16 F2 1
DJ1 C34 F3 1
DJ1 C35 F3 1
DJ1 C31 F3 1
DJ1 C32 F3 1
DJ1 N33 F3 1
DJ1 C36 F3 1
DJ1 C37 F3 1
DJ1 C38 F3 1
DJ1 C39 F3 1
DJ1 O21 F4 1
DJ1 C20 F4 1
DJ1 C13 F4 1
DJ1 N14 F4 1
DJ1 C34 F5 1
DJ1 C39 F5 1
DJ1 C38 F5 1
DJ1 C37 F5 1
DJ1 C36 F5 1
DJ1 C35 F5 1
DJ1 C27 F6 1
DJ1 C26 F6 1
DJ1 C25 F6 1
DJ1 C24 F6 1
DJ1 C29 F6 1
DJ1 N28 F6 1
DJ1 C32 F7 1
DJ1 C31 F7 1
DJ1 C35 F7 1
DJ1 C34 F7 1
DJ1 N33 F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DJ1
_pdbe_chem_comp_rdkit_properties.exactmw 551.293
_pdbe_chem_comp_rdkit_properties.amw 551.757
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 80
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 292.842
_pdbe_chem_comp_rdkit_properties.tpsa 108.140
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.411
_pdbe_chem_comp_rdkit_properties.CrippenMR 155.011
_pdbe_chem_comp_rdkit_properties.chi0v 19.686
_pdbe_chem_comp_rdkit_properties.chi1v 10.777
_pdbe_chem_comp_rdkit_properties.chi2v 4.357
_pdbe_chem_comp_rdkit_properties.chi3v 4.357
_pdbe_chem_comp_rdkit_properties.chi4v 2.802
_pdbe_chem_comp_rdkit_properties.chi0n 59.869
_pdbe_chem_comp_rdkit_properties.chi1n 30.250
_pdbe_chem_comp_rdkit_properties.chi2n 3.766
_pdbe_chem_comp_rdkit_properties.chi3n 3.766
_pdbe_chem_comp_rdkit_properties.chi4n 2.328
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.040
_pdbe_chem_comp_rdkit_properties.kappa1 6.874
_pdbe_chem_comp_rdkit_properties.kappa2 13.847
_pdbe_chem_comp_rdkit_properties.kappa3 9.284
_pdbe_chem_comp_rdkit_properties.Phi 2.441
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DJ1 UniChem PDBe DJ1
DJ1 UniChem PubChem 131842081
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DJ1 C15 3.946 0.427 -1.058 ETKDGv3 1
DJ1 C17 6.179 -0.232 -1.703 ETKDGv3 2
DJ1 C20 2.268 2.458 0.415 ETKDGv3 3
DJ1 C12 1.202 0.139 0.244 ETKDGv3 4
DJ1 N14 2.687 1.026 -1.559 ETKDGv3 5
DJ1 C16 5.157 0.877 -1.870 ETKDGv3 6
DJ1 C18 5.378 -1.511 -1.481 ETKDGv3 7
DJ1 C19 3.932 -1.092 -1.217 ETKDGv3 8
DJ1 C01 -4.742 -5.293 2.352 ETKDGv3 9
DJ1 C02 -3.902 -4.481 3.356 ETKDGv3 10
DJ1 C03 -2.629 -5.253 3.751 ETKDGv3 11
DJ1 C04 -4.742 -4.231 4.617 ETKDGv3 12
DJ1 C06 -2.821 -2.960 1.644 ETKDGv3 13
DJ1 C09 -1.958 -1.272 -0.052 ETKDGv3 14
DJ1 C10 -1.524 0.206 -0.058 ETKDGv3 15
DJ1 C13 1.716 1.387 -0.504 ETKDGv3 16
DJ1 C23 3.270 4.777 0.606 ETKDGv3 17
DJ1 C24 4.719 4.482 0.335 ETKDGv3 18
DJ1 C25 5.326 4.881 -0.956 ETKDGv3 19
DJ1 C26 6.603 4.581 -1.215 ETKDGv3 20
DJ1 C27 7.390 3.844 -0.208 ETKDGv3 21
DJ1 C29 5.469 3.799 1.219 ETKDGv3 22
DJ1 C30 -2.861 -1.603 -1.260 ETKDGv3 23
DJ1 C31 -4.187 -0.893 -1.211 ETKDGv3 24
DJ1 C32 -5.266 -1.309 -0.529 ETKDGv3 25
DJ1 C34 -5.872 0.669 -1.434 ETKDGv3 26
DJ1 C35 -4.515 0.392 -1.823 ETKDGv3 27
DJ1 C36 -3.813 1.229 -2.592 ETKDGv3 28
DJ1 C37 -4.486 2.481 -3.036 ETKDGv3 29
DJ1 C38 -5.760 2.741 -2.667 ETKDGv3 30
DJ1 C39 -6.508 1.779 -1.812 ETKDGv3 31
DJ1 N08 -2.633 -1.610 1.207 ETKDGv3 32
DJ1 N22 2.429 3.796 -0.074 ETKDGv3 33
DJ1 N28 6.840 3.488 0.917 ETKDGv3 34
DJ1 N33 -6.360 -0.388 -0.626 ETKDGv3 35
DJ1 O05 -3.565 -3.197 2.809 ETKDGv3 36
DJ1 O07 -2.324 -3.913 0.985 ETKDGv3 37
DJ1 O21 2.632 2.168 1.588 ETKDGv3 38
DJ1 S11 -0.281 0.529 1.247 ETKDGv3 39
DJ1 H1 4.140 0.676 0.009 ETKDGv3 40
DJ1 H2 6.809 -0.023 -0.811 ETKDGv3 41
DJ1 H3 6.832 -0.312 -2.599 ETKDGv3 42
DJ1 H4 0.975 -0.669 -0.483 ETKDGv3 43
DJ1 H5 2.890 1.893 -2.110 ETKDGv3 44
DJ1 H7 5.549 1.849 -1.504 ETKDGv3 45
DJ1 H8 4.893 0.968 -2.948 ETKDGv3 46
DJ1 H9 5.786 -2.074 -0.613 ETKDGv3 47
DJ1 H10 5.429 -2.160 -2.383 ETKDGv3 48
DJ1 H11 3.541 -1.588 -0.304 ETKDGv3 49
DJ1 H12 3.298 -1.384 -2.084 ETKDGv3 50
DJ1 H13 -4.146 -5.573 1.459 ETKDGv3 51
DJ1 H14 -5.617 -4.698 2.014 ETKDGv3 52
DJ1 H15 -5.110 -6.232 2.819 ETKDGv3 53
DJ1 H16 -2.034 -5.539 2.859 ETKDGv3 54
DJ1 H17 -2.891 -6.187 4.293 ETKDGv3 55
DJ1 H18 -1.990 -4.628 4.411 ETKDGv3 56
DJ1 H19 -5.040 -5.189 5.095 ETKDGv3 57
DJ1 H20 -4.162 -3.634 5.354 ETKDGv3 58
DJ1 H21 -5.662 -3.662 4.361 ETKDGv3 59
DJ1 H22 -1.039 -1.892 -0.142 ETKDGv3 60
DJ1 H23 -2.401 0.858 0.140 ETKDGv3 61
DJ1 H24 -1.119 0.484 -1.053 ETKDGv3 62
DJ1 H25 0.836 1.834 -1.017 ETKDGv3 63
DJ1 H26 3.049 4.783 1.696 ETKDGv3 64
DJ1 H27 3.030 5.792 0.222 ETKDGv3 65
DJ1 H28 4.738 5.413 -1.692 ETKDGv3 66
DJ1 H29 7.054 4.868 -2.156 ETKDGv3 67
DJ1 H30 8.423 3.593 -0.406 ETKDGv3 68
DJ1 H31 5.052 3.473 2.163 ETKDGv3 69
DJ1 H32 -3.041 -2.699 -1.298 ETKDGv3 70
DJ1 H33 -2.335 -1.340 -2.202 ETKDGv3 71
DJ1 H34 -5.312 -2.226 0.044 ETKDGv3 72
DJ1 H35 -2.794 1.012 -2.883 ETKDGv3 73
DJ1 H36 -3.948 3.184 -3.659 ETKDGv3 74
DJ1 H37 -6.243 3.653 -2.994 ETKDGv3 75
DJ1 H38 -7.529 1.973 -1.508 ETKDGv3 76
DJ1 H39 -3.009 -0.847 1.815 ETKDGv3 77
DJ1 H40 2.021 4.051 -1.002 ETKDGv3 78
DJ1 H41 -7.301 -0.471 -0.182 ETKDGv3 79
DJ1 H42 1.983 -0.247 0.931 ETKDGv3 80
#