data_DLT
#
_chem_comp.id DLT
_chem_comp.name 3-Carboxy-N-(2-fluoroethyl)-N,N-dimethylpropan-1-aminium
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H17 F N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2013-03-27
_chem_comp.pdbx_modified_date 2014-09-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 178.224
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DLT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4BGM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DLT CAF CAF C 0 1 N N N N N N 23.182 32.644 88.547 -2.492 -0.678 0.000 CAF DLT 1
DLT CAE CAE C 0 1 N N N N N N 22.314 32.977 89.753 -3.705 0.254 -0.000 CAE DLT 2
DLT CAA CAA C 0 1 N N N N N N 21.422 32.637 86.873 -1.226 0.969 -1.199 CAA DLT 3
DLT CAH CAH C 0 1 N N N N N N 23.544 31.602 86.481 -1.226 0.969 1.199 CAH DLT 4
DLT CAJ CAJ C 0 1 N N N N N N 22.039 30.575 88.079 -0.095 -0.774 0.000 CAJ DLT 5
DLT CAK CAK C 0 1 N N N N N N 21.592 29.559 87.023 1.188 0.058 -0.000 CAK DLT 6
DLT CAL CAL C 0 1 N N N N N N 20.746 28.439 87.615 2.401 -0.874 0.000 CAL DLT 7
DLT CAM CAM C 0 1 N N N N N N 21.562 27.281 88.103 3.665 -0.054 -0.000 CAM DLT 8
DLT N3 N3 N 1 1 N N N N N N 22.504 31.855 87.496 -1.260 0.121 -0.000 N3 DLT 9
DLT OAC OAC O 0 1 N N N N N N 20.892 26.321 88.507 4.861 -0.664 0.000 OAC DLT 10
DLT F26 F26 F 0 1 N N N N N N 22.314 31.935 90.640 -4.879 -0.507 0.000 F26 DLT 11
DLT OAB OAB O 0 1 N N N N N N 22.813 27.270 88.118 3.603 1.153 -0.000 OAB DLT 12
DLT HAF1 HAF1 H 0 0 N N N N N N 23.523 33.589 88.099 -2.517 -1.307 0.890 HAF1 DLT 13
DLT HAF2 HAF2 H 0 0 N N N N N N 24.052 32.070 88.899 -2.517 -1.307 -0.890 HAF2 DLT 14
DLT HAE1 HAE1 H 0 0 N N N N N N 22.711 33.875 90.249 -3.680 0.883 0.890 HAE1 DLT 15
DLT HAE2 HAE2 H 0 0 N N N N N N 21.284 33.168 89.417 -3.680 0.883 -0.890 HAE2 DLT 16
DLT HAA1 HAA1 H 0 0 N N N N N N 20.932 32.032 86.096 -2.090 1.633 -1.199 HAA1 DLT 17
DLT HAA2 HAA2 H 0 0 N N N N N N 20.684 32.917 87.639 -0.312 1.562 -1.199 HAA2 DLT 18
DLT HAA3 HAA3 H 0 0 N N N N N N 21.842 33.547 86.419 -1.251 0.340 -2.089 HAA3 DLT 19
DLT HAH1 HAH1 H 0 0 N N N N N N 23.116 31.014 85.656 -1.251 0.340 2.089 HAH1 DLT 20
DLT HAH2 HAH2 H 0 0 N N N N N N 23.918 32.561 86.092 -0.312 1.562 1.199 HAH2 DLT 21
DLT HAH3 HAH3 H 0 0 N N N N N N 24.374 31.043 86.938 -2.090 1.633 1.199 HAH3 DLT 22
DLT HAJ1 HAJ1 H 0 0 N N N N N N 21.189 30.783 88.746 -0.120 -1.403 -0.890 HAJ1 DLT 23
DLT HAJ2 HAJ2 H 0 0 N N N N N N 22.863 30.136 88.660 -0.120 -1.403 0.890 HAJ2 DLT 24
DLT HAK1 HAK1 H 0 0 N N N N N N 21.000 30.082 86.258 1.213 0.687 -0.890 HAK1 DLT 25
DLT HAK2 HAK2 H 0 0 N N N N N N 22.485 29.118 86.557 1.213 0.687 0.890 HAK2 DLT 26
DLT HAL1 HAL1 H 0 0 N N N N N N 20.172 28.844 88.461 2.376 -1.503 0.890 HAL1 DLT 27
DLT HAL2 HAL2 H 0 0 N N N N N N 20.053 28.077 86.841 2.376 -1.503 -0.890 HAL2 DLT 28
DLT HAC HAC H 0 1 N N N N N N 21.474 25.632 88.806 5.644 -0.096 -0.000 HAC DLT 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DLT CAF CAE SING N N 1
DLT CAF N3 SING N N 2
DLT CAE F26 SING N N 3
DLT CAA N3 SING N N 4
DLT CAH N3 SING N N 5
DLT CAJ CAK SING N N 6
DLT CAJ N3 SING N N 7
DLT CAK CAL SING N N 8
DLT CAL CAM SING N N 9
DLT CAM OAB DOUB N N 10
DLT CAM OAC SING N N 11
DLT CAF HAF1 SING N N 12
DLT CAF HAF2 SING N N 13
DLT CAE HAE1 SING N N 14
DLT CAE HAE2 SING N N 15
DLT CAA HAA1 SING N N 16
DLT CAA HAA2 SING N N 17
DLT CAA HAA3 SING N N 18
DLT CAH HAH1 SING N N 19
DLT CAH HAH2 SING N N 20
DLT CAH HAH3 SING N N 21
DLT CAJ HAJ1 SING N N 22
DLT CAJ HAJ2 SING N N 23
DLT CAK HAK1 SING N N 24
DLT CAK HAK2 SING N N 25
DLT CAL HAL1 SING N N 26
DLT CAL HAL2 SING N N 27
DLT OAC HAC SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DLT SMILES ACDLabs 12.01 O=C(O)CCC[N+](C)(C)CCF
DLT InChI InChI 1.03 InChI=1S/C8H16FNO2/c1-10(2,7-5-9)6-3-4-8(11)12/h3-7H2,1-2H3/p+1
DLT InChIKey InChI 1.03 QDYMCFLCMGVGMD-UHFFFAOYSA-O
DLT SMILES_CANONICAL CACTVS 3.385 C[N+](C)(CCF)CCCC(O)=O
DLT SMILES CACTVS 3.385 C[N+](C)(CCF)CCCC(O)=O
DLT SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 C[N+](C)(CCCC(=O)O)CCF
DLT SMILES "OpenEye OEToolkits" 1.9.2 C[N+](C)(CCCC(=O)O)CCF
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DLT "SYSTEMATIC NAME" ACDLabs 12.01 3-carboxy-N-(2-fluoroethyl)-N,N-dimethylpropan-1-aminium
DLT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 2-fluoranylethyl-dimethyl-(4-oxidanyl-4-oxidanylidene-butyl)azanium
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DLT 'Create component' 2013-03-27 EBI
DLT 'Initial release' 2014-03-12 RCSB
DLT 'Modify descriptor' 2014-09-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DLT CAF C 5.598 -0.649 1
DLT CAE C 4.299 0.101 2
DLT CAA C 6.147 1.399 3
DLT CAH C 7.647 -1.198 4
DLT CAJ C 8.196 0.851 5
DLT CAK C 9.495 0.101 6
DLT CAL C 10.794 0.851 7
DLT CAM C 12.093 0.101 8
DLT N3 N 6.897 0.101 9
DLT OAC O 12.093 -1.399 10
DLT F26 F 3.000 -0.649 11
DLT OAB O 13.392 0.851 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DLT CAF CAE SINGLE NONE 1
DLT CAF N3 SINGLE NONE 2
DLT CAE F26 SINGLE NONE 3
DLT CAA N3 SINGLE NONE 4
DLT CAH N3 SINGLE NONE 5
DLT CAJ CAK SINGLE NONE 6
DLT CAJ N3 SINGLE NONE 7
DLT CAK CAL SINGLE NONE 8
DLT CAL CAM SINGLE NONE 9
DLT CAM OAB DOUBLE NONE 10
DLT CAM OAC SINGLE NONE 11
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id DLT
_pdbe_chem_comp_rdkit_properties.exactmw 178.124
_pdbe_chem_comp_rdkit_properties.amw 178.227
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.875
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 96.356
_pdbe_chem_comp_rdkit_properties.tpsa 37.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.897
_pdbe_chem_comp_rdkit_properties.CrippenMR 44.687
_pdbe_chem_comp_rdkit_properties.chi0v 5.642
_pdbe_chem_comp_rdkit_properties.chi1v 2.492
_pdbe_chem_comp_rdkit_properties.chi2v 0.598
_pdbe_chem_comp_rdkit_properties.chi3v 0.598
_pdbe_chem_comp_rdkit_properties.chi4v 0.254
_pdbe_chem_comp_rdkit_properties.chi0n 22.642
_pdbe_chem_comp_rdkit_properties.chi1n 10.900
_pdbe_chem_comp_rdkit_properties.chi2n 0.598
_pdbe_chem_comp_rdkit_properties.chi3n 0.598
_pdbe_chem_comp_rdkit_properties.chi4n 0.254
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.640
_pdbe_chem_comp_rdkit_properties.kappa1 1.629
_pdbe_chem_comp_rdkit_properties.kappa2 5.085
_pdbe_chem_comp_rdkit_properties.kappa3 6.095
_pdbe_chem_comp_rdkit_properties.Phi 0.690
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DLT UniChem ChEMBL CHEMBL3306341
DLT UniChem PDBe DLT
DLT UniChem ZINC ZINC000098208803
DLT UniChem SureChEMBL SCHEMBL16408771
DLT UniChem BRENDA 223256
DLT UniChem PubChem 70673858
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DLT CAF -1.335 1.154 -0.001 ETKDGv3 1
DLT CAE -2.741 1.691 -0.338 ETKDGv3 2
DLT CAA -2.202 -1.035 0.699 ETKDGv3 3
DLT CAH -1.232 -0.801 -1.499 ETKDGv3 4
DLT CAJ 0.166 -0.720 0.505 ETKDGv3 5
DLT CAK 1.408 -0.089 -0.171 ETKDGv3 6
DLT CAL 2.699 -0.631 0.453 ETKDGv3 7
DLT CAM 3.896 -0.004 -0.188 ETKDGv3 8
DLT N3 -1.155 -0.333 -0.090 ETKDGv3 9
DLT OAC 4.401 1.193 0.308 ETKDGv3 10
DLT F26 -3.072 1.455 -1.659 ETKDGv3 11
DLT OAB 4.423 -0.539 -1.201 ETKDGv3 12
DLT HAF1 -1.093 1.502 1.029 ETKDGv3 13
DLT HAF2 -0.630 1.673 -0.685 ETKDGv3 14
DLT HAE1 -2.743 2.791 -0.182 ETKDGv3 15
DLT HAE2 -3.520 1.276 0.332 ETKDGv3 16
DLT HAA1 -1.997 -2.128 0.759 ETKDGv3 17
DLT HAA2 -2.255 -0.636 1.737 ETKDGv3 18
DLT HAA3 -3.208 -0.938 0.236 ETKDGv3 19
DLT HAH1 -0.645 -0.148 -2.181 ETKDGv3 20
DLT HAH2 -0.852 -1.842 -1.599 ETKDGv3 21
DLT HAH3 -2.278 -0.810 -1.875 ETKDGv3 22
DLT HAJ1 0.289 -1.827 0.469 ETKDGv3 23
DLT HAJ2 0.191 -0.442 1.584 ETKDGv3 24
DLT HAK1 1.399 1.013 -0.037 ETKDGv3 25
DLT HAK2 1.421 -0.322 -1.256 ETKDGv3 26
DLT HAL1 2.714 -0.408 1.542 ETKDGv3 27
DLT HAL2 2.748 -1.735 0.324 ETKDGv3 28
DLT HAC 5.201 1.639 -0.125 ETKDGv3 29
#