data_DMX
#
_chem_comp.id DMX
_chem_comp.name 3-[BENZYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H19 N O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-06-28
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 257.349
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DMX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1TP7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DMX C1 C1 C 0 1 Y N N N N N -22.252 -38.012 1.841 5.714 -0.003 0.868 C1 DMX 1
DMX C2 C2 C 0 1 Y N N N N N -23.458 -37.422 1.400 5.122 1.196 0.516 C2 DMX 2
DMX C3 C3 C 0 1 Y N N N N N -24.077 -37.844 0.197 3.939 1.198 -0.199 C3 DMX 3
DMX C4 C4 C 0 1 Y N N N N N -23.494 -38.871 -0.591 3.343 0.002 -0.553 C4 DMX 4
DMX C5 C5 C 0 1 Y N N N N N -22.273 -39.460 -0.133 3.936 -1.197 -0.201 C5 DMX 5
DMX C6 C6 C 0 1 Y N N N N N -21.656 -39.035 1.073 5.121 -1.199 0.510 C6 DMX 6
DMX C7 C7 C 0 1 N N N N N N -24.174 -39.356 -1.932 2.051 0.004 -1.328 C7 DMX 7
DMX N8 N8 N 1 1 N N N N N N -23.869 -38.826 -3.370 0.918 0.001 -0.392 N8 DMX 8
DMX C9 C9 C 0 1 N N N N N N -22.493 -39.317 -3.926 -0.342 0.003 -1.148 C9 DMX 9
DMX C10 C10 C 0 1 N N N N N N -19.898 -39.367 -3.653 -2.833 0.003 -0.960 C10 DMX 10
DMX S11 S11 S 0 1 N N N N N N -18.661 -38.673 -2.507 -4.231 0.000 0.196 S11 DMX 11
DMX C12 C12 C 0 1 N N N N N N -24.959 -39.340 -4.296 0.982 1.198 0.457 C12 DMX 12
DMX C13 C13 C 0 1 N N N N N N -23.991 -37.323 -3.421 0.982 -1.201 0.450 C13 DMX 13
DMX O14 O14 O -1 1 N N N N N N -17.192 -39.025 -3.026 -4.164 -1.192 1.028 O14 DMX 14
DMX O15 O15 O 0 1 N N N N N N -18.864 -39.341 -0.949 -4.164 1.186 1.035 O15 DMX 15
DMX O16 O16 O 0 1 N N N N N N -18.817 -36.975 -2.436 -5.476 0.002 -0.556 O16 DMX 16
DMX C17 C17 C 0 1 N N N N N N -21.175 -38.508 -3.651 -1.521 0.001 -0.173 C17 DMX 17
DMX H1 H1 H 0 1 N N N N N N -21.778 -37.676 2.779 6.640 -0.004 1.424 H1 DMX 18
DMX H2 H2 H 0 1 N N N N N N -23.921 -36.622 2.002 5.585 2.130 0.796 H2 DMX 19
DMX H3 H3 H 0 1 N N N N N N -25.018 -37.370 -0.128 3.476 2.134 -0.475 H3 DMX 20
DMX H5 H5 H 0 1 N N N N N N -21.796 -40.260 -0.723 3.472 -2.131 -0.481 H5 DMX 21
DMX H6 H6 H 0 1 N N N N N N -20.714 -39.499 1.412 5.584 -2.135 0.785 H6 DMX 22
DMX H71 1H7 H 0 1 N N N N N N -24.035 -40.461 -1.970 2.003 -0.884 -1.958 H71 DMX 23
DMX H72 2H7 H 0 1 N N N N N N -25.273 -39.242 -1.783 2.003 0.896 -1.953 H72 DMX 24
DMX H91 1H9 H 0 1 N N N N N N -22.334 -40.365 -3.581 -0.389 0.895 -1.773 H91 DMX 25
DMX H92 2H9 H 0 1 N N N N N N -22.593 -39.452 -5.028 -0.389 -0.885 -1.778 H92 DMX 26
DMX H101 1H10 H 0 0 N N N N N N -19.485 -39.494 -4.681 -2.880 0.895 -1.585 H101 DMX 27
DMX H102 2H10 H 0 0 N N N N N N -20.117 -40.436 -3.428 -2.880 -0.885 -1.590 H102 DMX 28
DMX H121 1H12 H 0 0 N N N N N N -24.741 -38.961 -5.322 1.917 1.196 1.017 H121 DMX 29
DMX H122 2H12 H 0 0 N N N N N N -25.071 -40.448 -4.258 0.935 2.090 -0.168 H122 DMX 30
DMX H123 3H12 H 0 0 N N N N N N -25.984 -39.075 -3.946 0.142 1.196 1.151 H123 DMX 31
DMX H131 1H13 H 0 0 N N N N N N -23.773 -36.944 -4.447 0.142 -1.203 1.144 H131 DMX 32
DMX H132 2H13 H 0 0 N N N N N N -24.985 -36.976 -3.055 0.935 -2.089 -0.180 H132 DMX 33
DMX H133 3H13 H 0 0 N N N N N N -23.349 -36.829 -2.654 1.917 -1.202 1.010 H133 DMX 34
DMX H171 1H17 H 0 0 N N N N N N -21.078 -37.662 -4.371 -1.473 -0.891 0.452 H171 DMX 35
DMX H172 2H17 H 0 0 N N N N N N -21.259 -37.935 -2.697 -1.473 0.889 0.457 H172 DMX 36
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DMX C1 C2 SING Y N 1
DMX C1 C6 DOUB Y N 2
DMX C1 H1 SING N N 3
DMX C2 C3 DOUB Y N 4
DMX C2 H2 SING N N 5
DMX C3 C4 SING Y N 6
DMX C3 H3 SING N N 7
DMX C4 C5 DOUB Y N 8
DMX C4 C7 SING N N 9
DMX C5 C6 SING Y N 10
DMX C5 H5 SING N N 11
DMX C6 H6 SING N N 12
DMX C7 N8 SING N N 13
DMX C7 H71 SING N N 14
DMX C7 H72 SING N N 15
DMX N8 C9 SING N N 16
DMX N8 C12 SING N N 17
DMX N8 C13 SING N N 18
DMX C9 C17 SING N N 19
DMX C9 H91 SING N N 20
DMX C9 H92 SING N N 21
DMX C10 S11 SING N N 22
DMX C10 C17 SING N N 23
DMX C10 H101 SING N N 24
DMX C10 H102 SING N N 25
DMX S11 O14 SING N N 26
DMX S11 O15 DOUB N N 27
DMX S11 O16 DOUB N N 28
DMX C12 H121 SING N N 29
DMX C12 H122 SING N N 30
DMX C12 H123 SING N N 31
DMX C13 H131 SING N N 32
DMX C13 H132 SING N N 33
DMX C13 H133 SING N N 34
DMX C17 H171 SING N N 35
DMX C17 H172 SING N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DMX SMILES ACDLabs 10.04 "[O-]S(=O)(=O)CCC[N+](C)(Cc1ccccc1)C"
DMX SMILES_CANONICAL CACTVS 3.341 C[N+](C)(CCC[S]([O-])(=O)=O)Cc1ccccc1
DMX SMILES CACTVS 3.341 C[N+](C)(CCC[S]([O-])(=O)=O)Cc1ccccc1
DMX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[N+](C)(CCCS(=O)(=O)[O-])Cc1ccccc1
DMX SMILES "OpenEye OEToolkits" 1.5.0 C[N+](C)(CCCS(=O)(=O)[O-])Cc1ccccc1
DMX InChI InChI 1.03 InChI=1S/C12H19NO3S/c1-13(2,9-6-10-17(14,15)16)11-12-7-4-3-5-8-12/h3-5,7-8H,6,9-11H2,1-2H3
DMX InChIKey InChI 1.03 MEJASPJNLSQOAG-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DMX "SYSTEMATIC NAME" ACDLabs 10.04 3-[benzyl(dimethyl)ammonio]propane-1-sulfonate
DMX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 3-(dimethyl-(phenylmethyl)azaniumyl)propane-1-sulfonate
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DMX 'Create component' 2004-06-28 RCSB
DMX 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DMX C1 C 4.299 -5.625 1
DMX C2 C 3.000 -4.875 2
DMX C3 C 3.000 -3.375 3
DMX C4 C 4.299 -2.625 4
DMX C5 C 5.598 -3.375 5
DMX C6 C 5.598 -4.875 6
DMX C7 C 4.299 -1.125 7
DMX N8 N 5.598 -0.375 8
DMX C9 C 6.897 0.375 9
DMX C10 C 8.196 2.625 10
DMX S11 S 8.196 4.125 11
DMX C12 C 4.848 0.924 12
DMX C13 C 6.348 -1.674 13
DMX O14 O 8.196 5.625 14
DMX O15 O 9.696 4.125 15
DMX O16 O 6.696 4.125 16
DMX C17 C 6.897 1.875 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DMX C1 C2 DOUBLE NONE 1
DMX C1 C6 SINGLE NONE 2
DMX C2 C3 SINGLE NONE 3
DMX C3 C4 DOUBLE NONE 4
DMX C4 C5 SINGLE NONE 5
DMX C4 C7 SINGLE NONE 6
DMX C5 C6 DOUBLE NONE 7
DMX C7 N8 SINGLE NONE 8
DMX N8 C9 SINGLE NONE 9
DMX N8 C12 SINGLE NONE 10
DMX N8 C13 SINGLE NONE 11
DMX C9 C17 SINGLE NONE 12
DMX C10 S11 SINGLE NONE 13
DMX C10 C17 SINGLE NONE 14
DMX S11 O14 SINGLE NONE 15
DMX S11 O15 DOUBLE NONE 16
DMX S11 O16 DOUBLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DMX MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
DMX phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DMX C1 S1 1
DMX C2 S1 1
DMX C3 S1 1
DMX C4 S1 1
DMX C5 S1 1
DMX C6 S1 1
DMX C1 F1 1
DMX C2 F1 1
DMX C3 F1 1
DMX C4 F1 1
DMX C5 F1 1
DMX C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DMX
_pdbe_chem_comp_rdkit_properties.exactmw 257.109
_pdbe_chem_comp_rdkit_properties.amw 257.355
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 36
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 129.914
_pdbe_chem_comp_rdkit_properties.tpsa 57.200
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.144
_pdbe_chem_comp_rdkit_properties.CrippenMR 66.037
_pdbe_chem_comp_rdkit_properties.chi0v 8.897
_pdbe_chem_comp_rdkit_properties.chi1v 5.257
_pdbe_chem_comp_rdkit_properties.chi2v 1.531
_pdbe_chem_comp_rdkit_properties.chi3v 1.531
_pdbe_chem_comp_rdkit_properties.chi4v 0.841
_pdbe_chem_comp_rdkit_properties.chi0n 27.080
_pdbe_chem_comp_rdkit_properties.chi1n 13.349
_pdbe_chem_comp_rdkit_properties.chi2n 1.179
_pdbe_chem_comp_rdkit_properties.chi3n 1.179
_pdbe_chem_comp_rdkit_properties.chi4n 0.671
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.910
_pdbe_chem_comp_rdkit_properties.kappa1 2.976
_pdbe_chem_comp_rdkit_properties.kappa2 5.619
_pdbe_chem_comp_rdkit_properties.kappa3 6.406
_pdbe_chem_comp_rdkit_properties.Phi 0.984
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DMX UniChem PDBe DMX
DMX UniChem eMolecules 485210
DMX UniChem SureChEMBL SCHEMBL3868824
DMX UniChem 'PubChem TPHARMA' 16571358
DMX UniChem ChemicalBook CB8117209
DMX UniChem PubChem 4386830
DMX UniChem Mcule MCULE-8782127288
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DMX C1 5.086 -0.348 0.326 ETKDGv3 1
DMX C2 4.524 0.862 0.432 ETKDGv3 2
DMX C3 3.138 1.078 -0.032 ETKDGv3 3
DMX C4 2.424 0.058 -0.546 ETKDGv3 4
DMX C5 3.066 -1.277 -0.678 ETKDGv3 5
DMX C6 4.323 -1.468 -0.260 ETKDGv3 6
DMX C7 1.007 0.272 -1.049 ETKDGv3 7
DMX N8 -0.079 0.037 -0.040 ETKDGv3 8
DMX C9 -1.379 0.283 -0.747 ETKDGv3 9
DMX C10 -3.909 0.384 -0.749 ETKDGv3 10
DMX S11 -5.396 0.186 0.218 ETKDGv3 11
DMX C12 0.075 0.976 1.100 ETKDGv3 12
DMX C13 -0.018 -1.360 0.458 ETKDGv3 13
DMX O14 -5.472 -1.378 0.828 ETKDGv3 14
DMX O15 -5.398 1.167 1.357 ETKDGv3 15
DMX O16 -6.593 0.436 -0.654 ETKDGv3 16
DMX C17 -2.664 0.109 0.100 ETKDGv3 17
DMX H1 6.102 -0.507 0.665 ETKDGv3 18
DMX H2 5.083 1.685 0.857 ETKDGv3 19
DMX H3 2.706 2.068 0.051 ETKDGv3 20
DMX H5 2.517 -2.103 -1.112 ETKDGv3 21
DMX H6 4.785 -2.442 -0.354 ETKDGv3 22
DMX H71 0.934 1.308 -1.456 ETKDGv3 23
DMX H72 0.860 -0.396 -1.929 ETKDGv3 24
DMX H91 -1.464 -0.402 -1.623 ETKDGv3 25
DMX H92 -1.391 1.319 -1.159 ETKDGv3 26
DMX H101 -3.948 -0.322 -1.606 ETKDGv3 27
DMX H102 -3.879 1.423 -1.144 ETKDGv3 28
DMX H121 0.002 2.033 0.761 ETKDGv3 29
DMX H122 1.049 0.836 1.614 ETKDGv3 30
DMX H123 -0.690 0.800 1.884 ETKDGv3 31
DMX H131 -0.159 -2.088 -0.371 ETKDGv3 32
DMX H132 0.953 -1.572 0.953 ETKDGv3 33
DMX H133 -0.784 -1.554 1.237 ETKDGv3 34
DMX H171 -2.740 -0.927 0.487 ETKDGv3 35
DMX H172 -2.670 0.820 0.950 ETKDGv3 36
#