data_DN2
#
_chem_comp.id DN2
_chem_comp.name
"3-({(2S)-2-[({(1S)-1-[({(1S)-1-[(R)-CARBOXY(HYDROXY)METHYL]-3,3-DIFLUOROPROPYL}AMINO)CARBONYL]-3-METHYLBUTYL}AMINO)CARBONYL]-2,3-DIHYDRO-1H-INDOL-2-YL}METHYL)THIOPHENE-2-CARBOXYLIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H31 F2 N3 O7 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "PEPTIDOMIMETIC INHIBITOR"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-07-14
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 567.602
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DN2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1W3C
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DN2 N1 N1 N 0 1 N N N N N N 23.451 29.490 -3.548 -0.621 0.100 -2.715 N1 DN2 1
DN2 C2 C2 C 0 1 N N S N N N 22.731 28.141 -3.638 0.164 -1.132 -2.619 C2 DN2 2
DN2 C1 C1 C 0 1 N N N N N N 22.836 27.409 -2.250 0.210 -1.613 -1.192 C1 DN2 3
DN2 O2 O2 O 0 1 N N N N N N 23.849 26.691 -2.081 0.127 -2.798 -0.948 O2 DN2 4
DN2 N3 N3 N 0 1 N N N N N N 21.891 27.571 -1.270 0.344 -0.726 -0.186 N3 DN2 5
DN2 C4 C4 C 0 1 N N S N N N 21.777 26.599 -0.170 0.261 -1.178 1.204 C4 DN2 6
DN2 C5 C5 C 0 1 N N N N N N 20.540 26.876 0.710 1.666 -1.487 1.725 C5 DN2 7
DN2 C6 C6 C 0 1 N N N N N N 19.050 28.708 1.753 3.713 -2.866 1.339 C6 DN2 8
DN2 C7 C7 C 0 1 N N N N N N 21.599 28.756 1.972 1.460 -3.946 1.334 C7 DN2 9
DN2 C8 C8 C 0 1 N N N N N N 20.397 28.355 1.121 2.241 -2.683 0.964 C8 DN2 10
DN2 C9 C9 C 0 1 N N N N N N 21.674 25.174 -0.773 -0.360 -0.096 2.048 C9 DN2 11
DN2 O10 O10 O 0 1 N N N N N N 21.032 24.974 -1.814 -0.701 0.950 1.537 O10 DN2 12
DN2 N11 N11 N 0 1 N N N N N N 22.691 24.339 -0.303 -0.539 -0.290 3.369 N11 DN2 13
DN2 C12 C12 C 0 1 N N S N N N 22.653 22.892 -0.482 -1.144 0.762 4.189 C12 DN2 14
DN2 C13 C13 C 0 1 N N N N N N 23.843 22.194 -1.158 -2.662 0.577 4.217 C13 DN2 15
DN2 C14 C14 C 0 1 N N N N N N 24.381 22.882 -2.398 -3.213 0.661 2.792 C14 DN2 16
DN2 F15 F15 F 0 1 N N N N N N 23.524 22.801 -3.276 -4.601 0.492 2.818 F15 DN2 17
DN2 F16 F16 F 0 1 N N N N N N 24.462 24.083 -2.169 -2.905 1.912 2.246 F16 DN2 18
DN2 C17 C17 C 0 1 N N R N N N 22.105 22.080 0.824 -0.593 0.678 5.614 C17 DN2 19
DN2 C18 C18 C 0 1 N N N N N N 21.715 20.677 0.112 0.901 0.860 5.587 C18 DN2 20
DN2 O19 O19 O 0 1 N N N N N N 20.751 20.742 -0.706 1.431 1.994 5.101 O19 DN2 21
DN2 O20 O20 O 0 1 N N N N N N 22.444 19.716 0.444 1.624 -0.014 6.002 O20 DN2 22
DN2 O21 O21 O 0 1 N N N N N N 20.794 22.640 1.142 -0.908 -0.599 6.172 O21 DN2 23
DN2 C22 C22 C 0 1 N N N N N N 23.601 27.388 -4.707 1.581 -0.904 -3.148 C22 DN2 24
DN2 C23 C23 C 0 1 N N N N N N 21.318 28.420 -4.225 -0.576 -2.151 -3.502 C23 DN2 25
DN2 C24 C24 C 0 1 Y N N N N N 22.544 30.430 -4.059 -1.722 -0.096 -3.549 C24 DN2 26
DN2 C25 C25 C 0 1 Y N N N N N 21.335 29.893 -4.470 -1.763 -1.389 -4.046 C25 DN2 27
DN2 C26 C26 C 0 1 Y N N N N N 22.803 31.782 -4.182 -2.726 0.803 -3.917 C26 DN2 28
DN2 C27 C27 C 0 1 Y N N N N N 20.334 30.688 -5.016 -2.781 -1.782 -4.894 C27 DN2 29
DN2 C28 C28 C 0 1 Y N N N N N 20.569 32.055 -5.132 -3.770 -0.886 -5.254 C28 DN2 30
DN2 C29 C29 C 0 1 Y N N N N N 21.803 32.595 -4.718 -3.739 0.406 -4.763 C29 DN2 31
DN2 C30 C30 C 0 1 Y N N N N N 22.953 26.231 -5.473 2.219 0.236 -2.398 C30 DN2 32
DN2 C31 C31 C 0 1 Y N N N N N 22.109 25.252 -4.836 2.985 0.019 -1.280 C31 DN2 33
DN2 C32 C32 C 0 1 Y N N N N N 21.093 24.785 -5.638 3.539 1.081 -0.638 C32 DN2 34
DN2 S33 S33 S 0 1 Y N N N N N 21.124 25.529 -7.174 3.007 2.435 -1.582 S33 DN2 35
DN2 C34 C34 C 0 1 Y N N N N N 22.478 26.455 -6.770 2.064 1.551 -2.811 C34 DN2 36
DN2 C35 C35 C 0 1 N N N N N N 22.969 27.628 -7.528 1.314 2.077 -3.954 C35 DN2 37
DN2 O36 O36 O 0 1 N N N N N N 23.970 28.199 -6.981 1.279 3.405 -4.183 O36 DN2 38
DN2 O37 O37 O 0 1 N N N N N N 22.389 27.954 -8.594 0.724 1.315 -4.696 O37 DN2 39
DN2 H1 H1 H 0 1 N N N N N N 24.390 29.667 -3.192 -0.406 0.932 -2.264 H1 DN2 40
DN2 H3 H3 H 0 1 N N N N N N 21.261 28.372 -1.303 0.496 0.210 -0.383 H3 DN2 41
DN2 H4 H4 H 0 1 N N N N N N 22.693 26.659 0.463 -0.351 -2.078 1.258 H4 DN2 42
DN2 H5C1 1H5C H 0 0 N N N N N N 20.538 26.215 1.608 1.616 -1.722 2.788 H5C1 DN2 43
DN2 H5C2 2H5C H 0 0 N N N N N N 19.611 26.513 0.211 2.308 -0.618 1.576 H5C2 DN2 44
DN2 H6C1 1H6C H 0 0 N N N N N N 18.947 29.778 2.050 4.123 -3.718 0.797 H6C1 DN2 45
DN2 H6C2 2H6C H 0 0 N N N N N N 18.842 28.041 2.622 4.270 -1.966 1.076 H6C2 DN2 46
DN2 H6C3 3H6C H 0 0 N N N N N N 18.214 28.409 1.078 3.796 -3.043 2.412 H6C3 DN2 47
DN2 H7C1 1H7C H 0 0 N N N N N N 21.496 29.826 2.269 1.569 -4.141 2.401 H7C1 DN2 48
DN2 H7C2 2H7C H 0 0 N N N N N N 22.568 28.550 1.460 0.406 -3.803 1.096 H7C2 DN2 49
DN2 H7C3 3H7C H 0 0 N N N N N N 21.740 28.084 2.850 1.849 -4.792 0.768 H7C3 DN2 50
DN2 H8 H8 H 0 1 N N N N N N 20.467 28.950 0.180 2.159 -2.505 -0.107 H8 DN2 51
DN2 H11 H11 H 0 1 N N N N N N 23.486 24.755 0.181 -0.267 -1.126 3.778 H11 DN2 52
DN2 H12 H12 H 0 1 N N N N N N 21.831 22.755 -1.223 -0.904 1.737 3.764 H12 DN2 53
DN2 H131 1H13 H 0 0 N N N N N N 23.583 21.135 -1.390 -2.902 -0.397 4.642 H131 DN2 54
DN2 H132 2H13 H 0 0 N N N N N N 24.664 22.038 -0.420 -3.112 1.360 4.827 H132 DN2 55
DN2 H14 H14 H 0 1 N N N N N N 25.356 22.452 -2.725 -2.762 -0.121 2.182 H14 DN2 56
DN2 H17 H17 H 0 1 N N N N N N 22.817 22.005 1.679 -1.044 1.461 6.224 H17 DN2 57
DN2 H19 H19 H 0 1 N N N N N N 20.522 19.919 -1.123 2.390 2.111 5.083 H19 DN2 58
DN2 H21 H21 H 0 1 N N N N N N 20.475 22.167 1.902 -0.492 -1.262 5.604 H21 DN2 59
DN2 H221 1H22 H 0 0 N N N N N N 24.541 27.028 -4.226 2.172 -1.809 -3.005 H221 DN2 60
DN2 H222 2H22 H 0 0 N N N N N N 24.006 28.128 -5.436 1.538 -0.662 -4.210 H222 DN2 61
DN2 H231 1H23 H 0 0 N N N N N N 20.473 28.065 -3.589 0.065 -2.487 -4.316 H231 DN2 62
DN2 H232 2H23 H 0 0 N N N N N N 21.056 27.804 -5.117 -0.910 -2.999 -2.904 H232 DN2 63
DN2 H26 H26 H 0 1 N N N N N N 23.771 32.206 -3.866 -2.708 1.814 -3.537 H26 DN2 64
DN2 H27 H27 H 0 1 N N N N N N 19.379 30.247 -5.348 -2.804 -2.792 -5.277 H27 DN2 65
DN2 H28 H28 H 0 1 N N N N N N 19.790 32.715 -5.548 -4.565 -1.194 -5.916 H28 DN2 66
DN2 H29 H29 H 0 1 N N N N N N 21.982 33.679 -4.819 -4.511 1.107 -5.043 H29 DN2 67
DN2 H31 H31 H 0 1 N N N N N N 22.263 24.908 -3.799 3.144 -0.984 -0.914 H31 DN2 68
DN2 H32 H32 H 0 1 N N N N N N 20.354 24.027 -5.328 4.160 1.082 0.244 H32 DN2 69
DN2 H36 H36 H 0 1 N N N N N N 24.285 28.951 -7.467 0.784 3.753 -4.937 H36 DN2 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DN2 N1 C2 SING N N 1
DN2 N1 C24 SING N N 2
DN2 N1 H1 SING N N 3
DN2 C2 C1 SING N N 4
DN2 C2 C22 SING N N 5
DN2 C2 C23 SING N N 6
DN2 C1 O2 DOUB N N 7
DN2 C1 N3 SING N N 8
DN2 N3 C4 SING N N 9
DN2 N3 H3 SING N N 10
DN2 C4 C5 SING N N 11
DN2 C4 C9 SING N N 12
DN2 C4 H4 SING N N 13
DN2 C5 C8 SING N N 14
DN2 C5 H5C1 SING N N 15
DN2 C5 H5C2 SING N N 16
DN2 C6 C8 SING N N 17
DN2 C6 H6C1 SING N N 18
DN2 C6 H6C2 SING N N 19
DN2 C6 H6C3 SING N N 20
DN2 C7 C8 SING N N 21
DN2 C7 H7C1 SING N N 22
DN2 C7 H7C2 SING N N 23
DN2 C7 H7C3 SING N N 24
DN2 C8 H8 SING N N 25
DN2 C9 O10 DOUB N N 26
DN2 C9 N11 SING N N 27
DN2 N11 C12 SING N N 28
DN2 N11 H11 SING N N 29
DN2 C12 C13 SING N N 30
DN2 C12 C17 SING N N 31
DN2 C12 H12 SING N N 32
DN2 C13 C14 SING N N 33
DN2 C13 H131 SING N N 34
DN2 C13 H132 SING N N 35
DN2 C14 F15 SING N N 36
DN2 C14 F16 SING N N 37
DN2 C14 H14 SING N N 38
DN2 C17 C18 SING N N 39
DN2 C17 O21 SING N N 40
DN2 C17 H17 SING N N 41
DN2 C18 O19 SING N N 42
DN2 C18 O20 DOUB N N 43
DN2 O19 H19 SING N N 44
DN2 O21 H21 SING N N 45
DN2 C22 C30 SING N N 46
DN2 C22 H221 SING N N 47
DN2 C22 H222 SING N N 48
DN2 C23 C25 SING N N 49
DN2 C23 H231 SING N N 50
DN2 C23 H232 SING N N 51
DN2 C24 C25 DOUB Y N 52
DN2 C24 C26 SING Y N 53
DN2 C25 C27 SING Y N 54
DN2 C26 C29 DOUB Y N 55
DN2 C26 H26 SING N N 56
DN2 C27 C28 DOUB Y N 57
DN2 C27 H27 SING N N 58
DN2 C28 C29 SING Y N 59
DN2 C28 H28 SING N N 60
DN2 C29 H29 SING N N 61
DN2 C30 C31 SING Y N 62
DN2 C30 C34 DOUB Y N 63
DN2 C31 C32 DOUB Y N 64
DN2 C31 H31 SING N N 65
DN2 C32 S33 SING Y N 66
DN2 C32 H32 SING N N 67
DN2 S33 C34 SING Y N 68
DN2 C34 C35 SING N N 69
DN2 C35 O36 SING N N 70
DN2 C35 O37 DOUB N N 71
DN2 O36 H36 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DN2 SMILES ACDLabs 10.04 O=C(O)C(O)C(NC(=O)C(NC(=O)C2(Nc1ccccc1C2)Cc3c(scc3)C(=O)O)CC(C)C)CC(F)F
DN2 SMILES_CANONICAL CACTVS 3.341 CC(C)C[C@H](NC(=O)[C@]1(Cc2ccccc2N1)Cc3ccsc3C(O)=O)C(=O)N[C@@H](CC(F)F)[C@@H](O)C(O)=O
DN2 SMILES CACTVS 3.341 CC(C)C[CH](NC(=O)[C]1(Cc2ccccc2N1)Cc3ccsc3C(O)=O)C(=O)N[CH](CC(F)F)[CH](O)C(O)=O
DN2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(C)C[C@@H](C(=O)N[C@@H](CC(F)F)[C@H](C(=O)O)O)NC(=O)[C@]1(Cc2ccccc2N1)Cc3ccsc3C(=O)O
DN2 SMILES "OpenEye OEToolkits" 1.5.0 CC(C)CC(C(=O)NC(CC(F)F)C(C(=O)O)O)NC(=O)C1(Cc2ccccc2N1)Cc3ccsc3C(=O)O
DN2 InChI InChI 1.03 InChI=1S/C26H31F2N3O7S/c1-13(2)9-18(22(33)29-17(10-19(27)28)20(32)23(34)35)30-25(38)26(11-14-5-3-4-6-16(14)31-26)12-15-7-8-39-21(15)24(36)37/h3-8,13,17-20,31-32H,9-12H2,1-2H3,(H,29,33)(H,30,38)(H,34,35)(H,36,37)/t17-,18-,20+,26-/m0/s1
DN2 InChIKey InChI 1.03 BEFPIHVRQQQFFB-QUPVEMFASA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DN2 "SYSTEMATIC NAME" ACDLabs 10.04 "3-{[N-({(2S)-2-[(2-carboxythiophen-3-yl)methyl]-2,3-dihydro-1H-indol-2-yl}carbonyl)-L-leucyl]amino}-3,4,5-trideoxy-5,5-difluoro-L-threo-pentonic acid"
DN2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-[[(2S)-2-[[(2S)-1-[[(2R,3S)-5,5-difluoro-1,2-dihydroxy-1-oxo-pentan-3-yl]amino]-4-methyl-1-oxo-pentan-2-yl]carbamoyl]-1,3-dihydroindol-2-yl]methyl]thiophene-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DN2 'Create component' 2004-07-14 EBI
DN2 'Modify descriptor' 2011-06-04 RCSB
DN2 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id DN2
_pdbx_chem_comp_synonyms.name "PEPTIDOMIMETIC INHIBITOR"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id DN2
_pdbe_chem_comp_synonyms.name 'PEPTIDOMIMETIC INHIBITOR'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DN2 N1 N 7.018 -0.967 1
DN2 C2 C 7.893 0.241 2
DN2 C1 C 9.106 -0.641 3
DN2 O2 O 8.950 -2.133 4
DN2 N3 N 10.477 -0.031 5
DN2 C4 C 11.690 -0.913 6
DN2 C5 C 11.533 -2.404 7
DN2 C6 C 11.262 -4.988 8
DN2 C7 C 13.635 -3.932 9
DN2 C8 C 12.144 -3.775 10
DN2 C9 C 13.060 -0.302 11
DN2 O10 O 13.217 1.189 12
DN2 N11 N 14.274 -1.184 13
DN2 C12 C 15.644 -0.574 14
DN2 C13 C 15.801 0.918 15
DN2 C14 C 17.171 1.528 16
DN2 F15 F 17.328 3.020 17
DN2 F16 F 18.385 0.646 18
DN2 C17 C 16.858 -1.456 19
DN2 C18 C 16.701 -2.947 20
DN2 O19 O 17.915 -3.829 21
DN2 O20 O 15.331 -3.558 22
DN2 O21 O 18.228 -0.846 23
DN2 C22 C 9.106 1.122 24
DN2 C23 C 7.018 1.448 25
DN2 C24 C 5.598 -0.509 26
DN2 C25 C 5.598 0.991 27
DN2 C26 C 4.299 -1.259 28
DN2 C27 C 4.299 1.741 29
DN2 C28 C 3.000 0.991 30
DN2 C29 C 3.000 -0.509 31
DN2 C30 C 8.950 2.614 32
DN2 C31 C 7.650 3.364 33
DN2 C32 C 7.962 4.831 34
DN2 S33 S 9.454 4.988 35
DN2 C34 C 10.064 3.618 36
DN2 C35 C 11.532 3.306 37
DN2 O36 O 12.535 4.421 38
DN2 O37 O 11.995 1.879 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DN2 N1 C2 SINGLE NONE 1
DN2 N1 C24 SINGLE NONE 2
DN2 C2 C1 SINGLE NONE 3
DN2 C2 C22 SINGLE BEGINWEDGE 4
DN2 C2 C23 SINGLE NONE 5
DN2 C1 O2 DOUBLE NONE 6
DN2 C1 N3 SINGLE NONE 7
DN2 N3 C4 SINGLE NONE 8
DN2 C4 C5 SINGLE BEGINDASH 9
DN2 C4 C9 SINGLE NONE 10
DN2 C5 C8 SINGLE NONE 11
DN2 C6 C8 SINGLE NONE 12
DN2 C7 C8 SINGLE NONE 13
DN2 C9 O10 DOUBLE NONE 14
DN2 C9 N11 SINGLE NONE 15
DN2 N11 C12 SINGLE NONE 16
DN2 C12 C13 SINGLE BEGINWEDGE 17
DN2 C12 C17 SINGLE NONE 18
DN2 C13 C14 SINGLE NONE 19
DN2 C14 F15 SINGLE NONE 20
DN2 C14 F16 SINGLE NONE 21
DN2 C17 C18 SINGLE NONE 22
DN2 C17 O21 SINGLE BEGINWEDGE 23
DN2 C18 O19 SINGLE NONE 24
DN2 C18 O20 DOUBLE NONE 25
DN2 C22 C30 SINGLE NONE 26
DN2 C23 C25 SINGLE NONE 27
DN2 C24 C25 DOUBLE NONE 28
DN2 C24 C26 SINGLE NONE 29
DN2 C25 C27 SINGLE NONE 30
DN2 C26 C29 DOUBLE NONE 31
DN2 C27 C28 DOUBLE NONE 32
DN2 C28 C29 SINGLE NONE 33
DN2 C30 C31 SINGLE NONE 34
DN2 C30 C34 DOUBLE NONE 35
DN2 C31 C32 DOUBLE NONE 36
DN2 C32 S33 SINGLE NONE 37
DN2 S33 C34 SINGLE NONE 38
DN2 C34 C35 SINGLE NONE 39
DN2 C35 O36 SINGLE NONE 40
DN2 C35 O37 DOUBLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DN2 MurckoScaffold S1 scaffold c1ccc2c(c1)CC(Cc1ccsc1)N2 InChI=1S/C13H13NS/c1-2-4-13-11(3-1)8-12(14-13)7-10-5-6-15-9-10/h1-6,9,12,14H,7-8H2 MEFRKCLBWCOUTC-UHFFFAOYSA-N
DN2 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
DN2 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
DN2 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
DN2 thiophen F4 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DN2 N1 S1 1
DN2 C2 S1 1
DN2 C22 S1 1
DN2 C23 S1 1
DN2 C24 S1 1
DN2 C25 S1 1
DN2 C26 S1 1
DN2 C27 S1 1
DN2 C28 S1 1
DN2 C29 S1 1
DN2 C30 S1 1
DN2 C31 S1 1
DN2 C32 S1 1
DN2 S33 S1 1
DN2 C34 S1 1
DN2 N3 F1 1
DN2 C1 F1 1
DN2 O2 F1 1
DN2 C2 F1 1
DN2 N11 F1 2
DN2 C9 F1 2
DN2 O10 F1 2
DN2 C4 F1 2
DN2 O2 F2 1
DN2 C1 F2 1
DN2 C2 F2 1
DN2 N1 F2 1
DN2 O10 F2 2
DN2 C9 F2 2
DN2 C4 F2 2
DN2 N3 F2 2
DN2 C24 F3 1
DN2 C25 F3 1
DN2 C27 F3 1
DN2 C28 F3 1
DN2 C29 F3 1
DN2 C26 F3 1
DN2 C32 F4 1
DN2 C31 F4 1
DN2 C30 F4 1
DN2 C34 F4 1
DN2 S33 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DN2
_pdbe_chem_comp_rdkit_properties.exactmw 567.185
_pdbe_chem_comp_rdkit_properties.amw 567.611
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 70
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.462
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 270.960
_pdbe_chem_comp_rdkit_properties.tpsa 165.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.967
_pdbe_chem_comp_rdkit_properties.CrippenMR 137.440
_pdbe_chem_comp_rdkit_properties.chi0v 19.180
_pdbe_chem_comp_rdkit_properties.chi1v 10.373
_pdbe_chem_comp_rdkit_properties.chi2v 4.875
_pdbe_chem_comp_rdkit_properties.chi3v 4.875
_pdbe_chem_comp_rdkit_properties.chi4v 3.168
_pdbe_chem_comp_rdkit_properties.chi0n 49.364
_pdbe_chem_comp_rdkit_properties.chi1n 24.623
_pdbe_chem_comp_rdkit_properties.chi2n 4.096
_pdbe_chem_comp_rdkit_properties.chi3n 4.096
_pdbe_chem_comp_rdkit_properties.chi4n 2.625
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.580
_pdbe_chem_comp_rdkit_properties.kappa1 8.964
_pdbe_chem_comp_rdkit_properties.kappa2 12.517
_pdbe_chem_comp_rdkit_properties.kappa3 7.295
_pdbe_chem_comp_rdkit_properties.Phi 2.877
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DN2 UniChem PDBe DN2
DN2 UniChem ZINC ZINC000058661206
DN2 UniChem PubChem 5288093
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DN2 N1 -0.679 1.568 1.089 ETKDGv3 1
DN2 C2 -1.728 0.714 0.525 ETKDGv3 2
DN2 C1 -1.060 -0.526 -0.056 ETKDGv3 3
DN2 O2 -1.333 -1.675 0.389 ETKDGv3 4
DN2 N3 -0.097 -0.389 -1.112 ETKDGv3 5
DN2 C4 0.644 -1.534 -1.652 ETKDGv3 6
DN2 C5 1.297 -1.183 -3.009 ETKDGv3 7
DN2 C6 1.084 -1.034 -5.520 ETKDGv3 8
DN2 C7 -0.840 -0.265 -4.100 ETKDGv3 9
DN2 C8 0.321 -1.265 -4.209 ETKDGv3 10
DN2 C9 1.701 -1.968 -0.667 ETKDGv3 11
DN2 O10 2.008 -3.189 -0.599 ETKDGv3 12
DN2 N11 2.390 -1.003 0.146 ETKDGv3 13
DN2 C12 3.391 -1.383 1.153 ETKDGv3 14
DN2 C13 4.257 -0.142 1.502 ETKDGv3 15
DN2 C14 5.470 -0.437 2.391 ETKDGv3 16
DN2 F15 6.223 -1.469 1.861 ETKDGv3 17
DN2 F16 6.261 0.695 2.473 ETKDGv3 18
DN2 C17 2.689 -2.045 2.370 ETKDGv3 19
DN2 C18 1.832 -1.075 3.136 ETKDGv3 20
DN2 O19 2.383 -0.302 4.154 ETKDGv3 21
DN2 O20 0.613 -0.950 2.845 ETKDGv3 22
DN2 O21 3.638 -2.636 3.219 ETKDGv3 23
DN2 C22 -2.474 1.520 -0.576 ETKDGv3 24
DN2 C23 -2.666 0.419 1.753 ETKDGv3 25
DN2 C24 -0.922 1.764 2.464 ETKDGv3 26
DN2 C25 -2.005 1.147 2.873 ETKDGv3 27
DN2 C26 -0.070 2.525 3.396 ETKDGv3 28
DN2 C27 -2.417 1.194 4.288 ETKDGv3 29
DN2 C28 -1.657 1.883 5.158 ETKDGv3 30
DN2 C29 -0.427 2.579 4.690 ETKDGv3 31
DN2 C30 -3.448 0.744 -1.449 ETKDGv3 32
DN2 C31 -4.069 -0.555 -1.057 ETKDGv3 33
DN2 C32 -4.872 -1.093 -1.969 ETKDGv3 34
DN2 S33 -4.956 -0.030 -3.381 ETKDGv3 35
DN2 C34 -3.862 1.174 -2.659 ETKDGv3 36
DN2 C35 -3.521 2.438 -3.341 ETKDGv3 37
DN2 O36 -2.958 3.505 -2.647 ETKDGv3 38
DN2 O37 -3.778 2.567 -4.567 ETKDGv3 39
DN2 H1 0.129 1.975 0.566 ETKDGv3 40
DN2 H3 0.145 0.571 -1.445 ETKDGv3 41
DN2 H4 -0.061 -2.382 -1.807 ETKDGv3 42
DN2 H5C1 2.120 -1.907 -3.202 ETKDGv3 43
DN2 H5C2 1.765 -0.175 -2.961 ETKDGv3 44
DN2 H6C1 0.401 -1.144 -6.389 ETKDGv3 45
DN2 H6C2 1.528 -0.015 -5.539 ETKDGv3 46
DN2 H6C3 1.898 -1.782 -5.629 ETKDGv3 47
DN2 H7C1 -1.518 -0.555 -3.272 ETKDGv3 48
DN2 H7C2 -0.460 0.765 -3.927 ETKDGv3 49
DN2 H7C3 -1.446 -0.270 -5.031 ETKDGv3 50
DN2 H8 -0.109 -2.291 -4.249 ETKDGv3 51
DN2 H11 2.193 0.011 -0.013 ETKDGv3 52
DN2 H12 4.066 -2.138 0.693 ETKDGv3 53
DN2 H131 4.638 0.289 0.550 ETKDGv3 54
DN2 H132 3.634 0.643 1.981 ETKDGv3 55
DN2 H14 5.148 -0.701 3.418 ETKDGv3 56
DN2 H17 2.027 -2.853 1.983 ETKDGv3 57
DN2 H19 1.815 0.359 4.670 ETKDGv3 58
DN2 H21 3.143 -3.245 3.828 ETKDGv3 59
DN2 H221 -1.698 1.963 -1.236 ETKDGv3 60
DN2 H222 -3.017 2.370 -0.110 ETKDGv3 61
DN2 H231 -3.691 0.824 1.612 ETKDGv3 62
DN2 H232 -2.741 -0.655 2.020 ETKDGv3 63
DN2 H26 0.826 3.020 3.046 ETKDGv3 64
DN2 H27 -3.311 0.681 4.620 ETKDGv3 65
DN2 H28 -1.937 1.930 6.202 ETKDGv3 66
DN2 H29 0.182 3.127 5.397 ETKDGv3 67
DN2 H31 -3.898 -1.049 -0.114 ETKDGv3 68
DN2 H32 -5.398 -2.030 -1.850 ETKDGv3 69
DN2 H36 -2.737 4.374 -3.119 ETKDGv3 70
#