data_DP8
#
_chem_comp.id DP8
_chem_comp.name N,N-dimethyl-2-(4-phenoxyphenoxy)ethanamine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H19 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-01-06
_chem_comp.pdbx_modified_date 2015-02-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 257.328
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DP8
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5AEN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DP8 C C C 0 1 N N N N N N 3.583 -2.143 -1.811 -6.506 1.019 -0.663 C DP8 1
DP8 N N N 0 1 N N N N N N 4.981 -1.867 -1.554 -5.349 0.194 -0.290 N DP8 2
DP8 O O O 0 1 N N N N N N 7.348 -0.649 -1.689 -2.500 0.501 -0.106 O DP8 3
DP8 C01 C01 C 0 1 Y N N N N N 13.942 -2.365 1.873 6.009 0.015 0.034 C01 DP8 4
DP8 O01 O01 O 0 1 N N N N N N 12.418 0.624 0.289 2.658 -1.362 -0.298 O01 DP8 5
DP8 C02 C02 C 0 1 Y N N N N N 14.323 -1.826 3.090 5.717 1.339 0.310 C02 DP8 6
DP8 C03 C03 C 0 1 Y N N N N N 14.060 -0.488 3.372 4.401 1.758 0.382 C03 DP8 7
DP8 C04 C04 C 0 1 Y N N N N N 13.416 0.309 2.438 3.375 0.856 0.179 C04 DP8 8
DP8 C05 C05 C 0 1 Y N N N N N 13.029 -0.223 1.225 3.666 -0.473 -0.098 C05 DP8 9
DP8 C06 C06 C 0 1 Y N N N N N 13.288 -1.559 0.930 4.987 -0.891 -0.169 C06 DP8 10
DP8 C07 C07 C 0 1 Y N N N N N 11.139 0.261 -0.219 1.380 -0.900 -0.250 C07 DP8 11
DP8 C08 C08 C 0 1 Y N N N N N 10.027 0.423 0.580 0.893 -0.100 -1.273 C08 DP8 12
DP8 C09 C09 C 0 1 Y N N N N N 8.796 0.128 0.076 -0.405 0.369 -1.225 C09 DP8 13
DP8 C10 C10 C 0 1 Y N N N N N 8.669 -0.352 -1.226 -1.222 0.039 -0.154 C10 DP8 14
DP8 C11 C11 C 0 1 Y N N N N N 9.783 -0.503 -2.034 -0.736 -0.762 0.869 C11 DP8 15
DP8 C12 C12 C 0 1 Y N N N N N 11.019 -0.187 -1.531 0.561 -1.235 0.818 C12 DP8 16
DP8 C13 C13 C 0 1 N N N N N N 7.194 -1.687 -2.642 -3.285 0.121 1.026 C13 DP8 17
DP8 C14 C14 C 0 1 N N N N N N 5.698 -1.865 -2.811 -4.683 0.731 0.904 C14 DP8 18
DP8 C15 C15 C 0 1 N N N N N N 5.458 -2.894 -0.678 -5.744 -1.206 -0.089 C15 DP8 19
DP8 H H H 0 1 N N N N N N 3.029 -2.147 -0.861 -6.189 2.054 -0.790 H DP8 20
DP8 HA HA H 0 1 N N N N N N 3.172 -1.366 -2.472 -6.929 0.651 -1.598 HA DP8 21
DP8 HB HB H 0 1 N N N N N N 3.486 -3.126 -2.295 -7.260 0.964 0.122 HB DP8 22
DP8 H01 H01 H 0 1 N N N N N N 14.148 -3.402 1.651 7.037 -0.309 -0.026 H01 DP8 23
DP8 H02 H02 H 0 1 N N N N N N 14.824 -2.443 3.821 6.518 2.046 0.469 H02 DP8 24
DP8 H03 H03 H 0 1 N N N N N N 14.359 -0.070 4.322 4.176 2.792 0.598 H03 DP8 25
DP8 H04 H04 H 0 1 N N N N N N 13.217 1.347 2.660 2.348 1.184 0.237 H04 DP8 26
DP8 H06 H06 H 0 1 N N N N N N 12.986 -1.973 -0.021 5.215 -1.924 -0.385 H06 DP8 27
DP8 H08 H08 H 0 1 N N N N N N 10.131 0.780 1.594 1.530 0.158 -2.107 H08 DP8 28
DP8 H09 H09 H 0 1 N N N N N N 7.916 0.267 0.687 -0.784 0.993 -2.021 H09 DP8 29
DP8 H11 H11 H 0 1 N N N N N N 9.680 -0.865 -3.046 -1.372 -1.019 1.703 H11 DP8 30
DP8 H12 H12 H 0 1 N N N N N N 11.897 -0.286 -2.152 0.939 -1.862 1.612 H12 DP8 31
DP8 H13 H13 H 0 1 N N N N N N 7.657 -1.403 -3.598 -3.365 -0.965 1.065 H13 DP8 32
DP8 H13A H13A H 0 0 N N N N N N 7.652 -2.617 -2.275 -2.809 0.484 1.936 H13A DP8 33
DP8 H14 H14 H 0 1 N N N N N N 5.515 -2.823 -3.320 -4.601 1.814 0.819 H14 DP8 34
DP8 H14A H14A H 0 0 N N N N N N 5.315 -1.041 -3.431 -5.268 0.479 1.789 H14A DP8 35
DP8 H15 H15 H 0 1 N N N N N N 6.522 -2.722 -0.456 -6.234 -1.579 -0.988 H15 DP8 36
DP8 H15A H15A H 0 0 N N N N N N 4.880 -2.875 0.258 -4.858 -1.807 0.117 H15A DP8 37
DP8 H15B H15B H 0 0 N N N N N N 5.339 -3.874 -1.163 -6.432 -1.272 0.754 H15B DP8 38
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DP8 C N SING N N 1
DP8 N C14 SING N N 2
DP8 N C15 SING N N 3
DP8 O C10 SING N N 4
DP8 O C13 SING N N 5
DP8 C01 C02 DOUB Y N 6
DP8 C01 C06 SING Y N 7
DP8 O01 C05 SING N N 8
DP8 O01 C07 SING N N 9
DP8 C02 C03 SING Y N 10
DP8 C03 C04 DOUB Y N 11
DP8 C04 C05 SING Y N 12
DP8 C05 C06 DOUB Y N 13
DP8 C07 C08 DOUB Y N 14
DP8 C07 C12 SING Y N 15
DP8 C08 C09 SING Y N 16
DP8 C09 C10 DOUB Y N 17
DP8 C10 C11 SING Y N 18
DP8 C11 C12 DOUB Y N 19
DP8 C13 C14 SING N N 20
DP8 C H SING N N 21
DP8 C HA SING N N 22
DP8 C HB SING N N 23
DP8 C01 H01 SING N N 24
DP8 C02 H02 SING N N 25
DP8 C03 H03 SING N N 26
DP8 C04 H04 SING N N 27
DP8 C06 H06 SING N N 28
DP8 C08 H08 SING N N 29
DP8 C09 H09 SING N N 30
DP8 C11 H11 SING N N 31
DP8 C12 H12 SING N N 32
DP8 C13 H13 SING N N 33
DP8 C13 H13A SING N N 34
DP8 C14 H14 SING N N 35
DP8 C14 H14A SING N N 36
DP8 C15 H15 SING N N 37
DP8 C15 H15A SING N N 38
DP8 C15 H15B SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DP8 SMILES ACDLabs 12.01 O(c2ccc(Oc1ccccc1)cc2)CCN(C)C
DP8 InChI InChI 1.03 InChI=1S/C16H19NO2/c1-17(2)12-13-18-14-8-10-16(11-9-14)19-15-6-4-3-5-7-15/h3-11H,12-13H2,1-2H3
DP8 InChIKey InChI 1.03 INAQPAUETXGHJF-UHFFFAOYSA-N
DP8 SMILES_CANONICAL CACTVS 3.385 CN(C)CCOc1ccc(Oc2ccccc2)cc1
DP8 SMILES CACTVS 3.385 CN(C)CCOc1ccc(Oc2ccccc2)cc1
DP8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CN(C)CCOc1ccc(cc1)Oc2ccccc2
DP8 SMILES "OpenEye OEToolkits" 1.7.6 CN(C)CCOc1ccc(cc1)Oc2ccccc2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DP8 "SYSTEMATIC NAME" ACDLabs 12.01 N,N-dimethyl-2-(4-phenoxyphenoxy)ethanamine
DP8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 N,N-dimethyl-2-(4-phenoxyphenoxy)ethanamine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DP8 'Create component' 2015-01-06 EBI
DP8 'Initial release' 2015-02-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DP8 C C 4.299 -6.750 1
DP8 N N 4.299 -5.250 2
DP8 O O 6.897 -2.250 3
DP8 C01 C 9.495 6.750 4
DP8 O01 O 6.897 3.750 5
DP8 C02 C 10.794 6.000 6
DP8 C03 C 10.794 4.500 7
DP8 C04 C 9.495 3.750 8
DP8 C05 C 8.196 4.500 9
DP8 C06 C 8.196 6.000 10
DP8 C07 C 6.897 2.250 11
DP8 C08 C 8.196 1.500 12
DP8 C09 C 8.196 0.000 13
DP8 C10 C 6.897 -0.750 14
DP8 C11 C 5.598 0.000 15
DP8 C12 C 5.598 1.500 16
DP8 C13 C 5.598 -3.000 17
DP8 C14 C 5.598 -4.500 18
DP8 C15 C 3.000 -4.500 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DP8 C N SINGLE NONE 1
DP8 N C14 SINGLE NONE 2
DP8 N C15 SINGLE NONE 3
DP8 O C10 SINGLE NONE 4
DP8 O C13 SINGLE NONE 5
DP8 C01 C02 DOUBLE NONE 6
DP8 C01 C06 SINGLE NONE 7
DP8 O01 C05 SINGLE NONE 8
DP8 O01 C07 SINGLE NONE 9
DP8 C02 C03 SINGLE NONE 10
DP8 C03 C04 DOUBLE NONE 11
DP8 C04 C05 SINGLE NONE 12
DP8 C05 C06 DOUBLE NONE 13
DP8 C07 C08 DOUBLE NONE 14
DP8 C07 C12 SINGLE NONE 15
DP8 C08 C09 SINGLE NONE 16
DP8 C09 C10 DOUBLE NONE 17
DP8 C10 C11 SINGLE NONE 18
DP8 C11 C12 DOUBLE NONE 19
DP8 C13 C14 SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DP8 MurckoScaffold S1 scaffold c1ccc(Oc2ccccc2)cc1 InChI=1S/C12H10O/c1-3-7-11(8-4-1)13-12-9-5-2-6-10-12/h1-10H USIUVYZYUHIAEV-UHFFFAOYSA-N
DP8 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DP8 C01 S1 1
DP8 O01 S1 1
DP8 C02 S1 1
DP8 C03 S1 1
DP8 C04 S1 1
DP8 C05 S1 1
DP8 C06 S1 1
DP8 C07 S1 1
DP8 C08 S1 1
DP8 C09 S1 1
DP8 C10 S1 1
DP8 C11 S1 1
DP8 C12 S1 1
DP8 C01 F1 1
DP8 C02 F1 1
DP8 C03 F1 1
DP8 C04 F1 1
DP8 C05 F1 1
DP8 C06 F1 1
DP8 C07 F1 2
DP8 C08 F1 2
DP8 C09 F1 2
DP8 C10 F1 2
DP8 C11 F1 2
DP8 C12 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id DP8
_pdbe_chem_comp_rdkit_properties.exactmw 257.142
_pdbe_chem_comp_rdkit_properties.amw 257.333
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 38
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 140.630
_pdbe_chem_comp_rdkit_properties.tpsa 21.700
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.032
_pdbe_chem_comp_rdkit_properties.CrippenMR 75.177
_pdbe_chem_comp_rdkit_properties.chi0v 9.264
_pdbe_chem_comp_rdkit_properties.chi1v 4.737
_pdbe_chem_comp_rdkit_properties.chi2v 1.571
_pdbe_chem_comp_rdkit_properties.chi3v 1.571
_pdbe_chem_comp_rdkit_properties.chi4v 0.903
_pdbe_chem_comp_rdkit_properties.chi0n 28.264
_pdbe_chem_comp_rdkit_properties.chi1n 14.237
_pdbe_chem_comp_rdkit_properties.chi2n 1.571
_pdbe_chem_comp_rdkit_properties.chi3n 1.571
_pdbe_chem_comp_rdkit_properties.chi4n 0.903
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.000
_pdbe_chem_comp_rdkit_properties.kappa1 3.179
_pdbe_chem_comp_rdkit_properties.kappa2 6.805
_pdbe_chem_comp_rdkit_properties.kappa3 4.639
_pdbe_chem_comp_rdkit_properties.Phi 1.139
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DP8 UniChem ChEMBL CHEMBL3921982
DP8 UniChem PDBe DP8
DP8 UniChem ZINC ZINC000215992969
DP8 UniChem PubChem 87057595
DP8 UniChem Nikkaji J1.498.399F
DP8 UniChem BindingDb 50197085
DP8 UniChem BRENDA 239375
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DP8 C -5.711 -0.168 -2.023 ETKDGv3 1
DP8 N -5.385 -1.181 -1.007 ETKDGv3 2
DP8 O -1.635 -1.051 -0.829 ETKDGv3 3
DP8 C01 6.806 1.188 0.734 ETKDGv3 4
DP8 O01 3.179 1.750 0.072 ETKDGv3 5
DP8 C02 6.791 0.147 1.575 ETKDGv3 6
DP8 C03 5.505 -0.444 1.995 ETKDGv3 7
DP8 C04 4.353 0.053 1.527 ETKDGv3 8
DP8 C05 4.364 1.195 0.573 ETKDGv3 9
DP8 C06 5.536 1.742 0.218 ETKDGv3 10
DP8 C07 1.989 1.042 -0.144 ETKDGv3 11
DP8 C08 0.822 1.694 -0.057 ETKDGv3 12
DP8 C09 -0.454 0.984 -0.286 ETKDGv3 13
DP8 C10 -0.455 -0.326 -0.604 ETKDGv3 14
DP8 C11 0.835 -1.038 -0.728 ETKDGv3 15
DP8 C12 1.990 -0.396 -0.517 ETKDGv3 16
DP8 C13 -2.952 -0.509 -0.748 ETKDGv3 17
DP8 C14 -3.971 -1.617 -1.058 ETKDGv3 18
DP8 C15 -5.803 -0.744 0.334 ETKDGv3 19
DP8 H -6.814 -0.064 -2.103 ETKDGv3 20
DP8 HA -5.282 0.824 -1.764 ETKDGv3 21
DP8 HB -5.334 -0.481 -3.021 ETKDGv3 22
DP8 H01 7.748 1.627 0.430 ETKDGv3 23
DP8 H02 7.720 -0.259 1.954 ETKDGv3 24
DP8 H03 5.495 -1.272 2.693 ETKDGv3 25
DP8 H04 3.416 -0.368 1.866 ETKDGv3 26
DP8 H06 5.561 2.585 -0.460 ETKDGv3 27
DP8 H08 0.805 2.747 0.195 ETKDGv3 28
DP8 H09 -1.375 1.543 -0.190 ETKDGv3 29
DP8 H11 0.845 -2.085 -1.004 ETKDGv3 30
DP8 H12 2.924 -0.928 -0.643 ETKDGv3 31
DP8 H13 -3.115 -0.116 0.277 ETKDGv3 32
DP8 H13A -3.047 0.315 -1.487 ETKDGv3 33
DP8 H14 -3.820 -2.454 -0.341 ETKDGv3 34
DP8 H14A -3.753 -2.032 -2.067 ETKDGv3 35
DP8 H15 -6.910 -0.668 0.372 ETKDGv3 36
DP8 H15A -5.495 -1.487 1.100 ETKDGv3 37
DP8 H15B -5.374 0.249 0.593 ETKDGv3 38
#