data_DU2
#
_chem_comp.id DU2
_chem_comp.name "2',5'-dideoxy-5'-{[(R)-(1-methyl-1H-imidazol-2-yl)(phenyl)methyl]amino}uridine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H23 N5 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-11-10
_chem_comp.pdbx_modified_date 2012-08-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 397.428
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DU2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3T6Y
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DU2 N1 N1 N 0 1 N N N N N N 17.713 21.750 -0.341 -3.648 -0.360 0.283 N1 DU2 1
DU2 C2 C2 C 0 1 N N N N N N 18.465 22.717 -0.838 -4.596 -0.402 1.237 C2 DU2 2
DU2 O2 O2 O 0 1 N N N N N N 19.675 22.573 -0.786 -4.636 -1.347 2.001 O2 DU2 3
DU2 N3 N3 N 0 1 N N N N N N 17.922 23.820 -1.428 -5.500 0.587 1.357 N3 DU2 4
DU2 C4 C4 C 0 1 N N N N N N 16.581 23.892 -1.507 -5.469 1.643 0.518 C4 DU2 5
DU2 O4 O4 O 0 1 N N N N N N 16.070 24.859 -2.069 -6.286 2.539 0.627 O4 DU2 6
DU2 C5 C5 C 0 1 N N N N N N 15.791 22.902 -0.951 -4.477 1.699 -0.490 C5 DU2 7
DU2 C6 C6 C 0 1 N N N N N N 16.353 21.823 -0.358 -3.582 0.693 -0.589 C6 DU2 8
DU2 "C1'" "C1'" C 0 1 N N R N N N 18.409 20.651 0.280 -2.674 -1.449 0.180 "C1'" DU2 9
DU2 C17 C17 C 0 1 N N R N N N 18.240 18.516 -4.104 2.849 -0.130 -0.455 C17 DU2 10
DU2 C18 C18 C 0 1 Y N N N N N 17.684 19.738 -4.469 3.991 -0.489 0.461 C18 DU2 11
DU2 C19 C19 C 0 1 Y N N N N N 18.131 20.903 -3.876 5.256 -0.693 -0.059 C19 DU2 12
DU2 "C2'" "C2'" C 0 1 N N N N N N 17.518 19.961 1.351 -2.861 -2.196 -1.155 "C2'" DU2 13
DU2 C20 C20 C 0 1 Y N N N N N 17.595 22.145 -4.257 6.303 -1.022 0.781 C20 DU2 14
DU2 C21 C21 C 0 1 Y N N N N N 16.599 22.256 -5.244 6.086 -1.147 2.140 C21 DU2 15
DU2 C22 C22 C 0 1 Y N N N N N 16.170 21.061 -5.831 4.822 -0.943 2.660 C22 DU2 16
DU2 C23 C23 C 0 1 Y N N N N N 16.689 19.808 -5.464 3.775 -0.609 1.821 C23 DU2 17
DU2 C24 C24 C 0 1 Y N N N N N 19.149 17.910 -5.002 2.605 1.356 -0.395 C24 DU2 18
DU2 N25 N25 N 0 1 Y N N N N N 19.760 16.741 -4.801 2.026 1.992 0.586 N25 DU2 19
DU2 C26 C26 C 0 1 Y N N N N N 20.686 16.362 -5.908 1.980 3.302 0.298 C26 DU2 20
DU2 C27 C27 C 0 1 Y N N N N N 20.552 17.505 -6.872 2.553 3.483 -0.907 C27 DU2 21
DU2 N28 N28 N 0 1 Y N N N N N 19.593 18.357 -6.171 2.954 2.250 -1.345 N28 DU2 22
DU2 C29 C29 C 0 1 N N N N N N 19.168 19.579 -6.748 3.633 1.954 -2.609 C29 DU2 23
DU2 "C3'" "C3'" C 0 1 N N S N N N 16.734 19.018 0.489 -1.488 -2.065 -1.859 "C3'" DU2 24
DU2 "C4'" "C4'" C 0 1 N N R N N N 17.730 18.586 -0.589 -0.542 -1.759 -0.670 "C4'" DU2 25
DU2 "O4'" "O4'" O 0 1 N N N N N N 18.636 19.737 -0.788 -1.339 -0.914 0.187 "O4'" DU2 26
DU2 O41 O41 O 0 1 N N N N N N 16.487 17.958 1.331 -1.124 -3.290 -2.498 O41 DU2 27
DU2 "C5'" "C5'" C 0 1 N N N N N N 17.009 18.352 -1.929 0.705 -1.014 -1.151 "C5'" DU2 28
DU2 "N5'" "N5'" N 0 1 N N N N N N 17.965 17.849 -2.948 1.637 -0.843 -0.029 "N5'" DU2 29
DU2 HN3 HN3 H 0 1 N N N N N N 18.501 24.551 -1.790 -6.177 0.541 2.050 HN3 DU2 30
DU2 H5 H5 H 0 1 N N N N N N 14.715 22.991 -0.990 -4.436 2.536 -1.172 H5 DU2 31
DU2 H6 H6 H 0 1 N N N N N N 15.745 21.048 0.086 -2.818 0.719 -1.352 H6 DU2 32
DU2 "H1'" "H1'" H 0 1 N N N N N N 19.328 20.983 0.785 -2.802 -2.141 1.012 "H1'" DU2 33
DU2 H17 H17 H 0 1 N N N N N N 17.637 19.095 -3.389 3.099 -0.416 -1.477 H17 DU2 34
DU2 H19 H19 H 0 1 N N N N N N 18.897 20.859 -3.115 5.425 -0.595 -1.121 H19 DU2 35
DU2 "H2'" "H2'" H 0 1 N N N N N N 18.108 19.439 2.119 -3.099 -3.244 -0.976 "H2'" DU2 36
DU2 "H2'A" "H2'A" H 0 0 N N N N N N 16.876 20.674 1.889 -3.641 -1.722 -1.751 "H2'A" DU2 37
DU2 H20 H20 H 0 1 N N N N N N 17.959 23.042 -3.777 7.291 -1.182 0.375 H20 DU2 38
DU2 H21 H21 H 0 1 N N N N N N 16.188 23.212 -5.533 6.904 -1.405 2.796 H21 DU2 39
DU2 H22 H22 H 0 1 N N N N N N 15.410 21.103 -6.597 4.652 -1.041 3.722 H22 DU2 40
DU2 H23 H23 H 0 1 N N N N N N 16.329 18.908 -5.940 2.788 -0.445 2.227 H23 DU2 41
DU2 H26 H26 H 0 1 N N N N N N 21.303 15.480 -5.995 1.558 4.075 0.923 H26 DU2 42
DU2 H27 H27 H 0 1 N N N N N N 21.034 17.657 -7.826 2.675 4.422 -1.427 H27 DU2 43
DU2 H29 H29 H 0 1 N N N N N N 19.677 19.726 -7.712 2.891 1.750 -3.381 H29 DU2 44
DU2 H29A H29A H 0 0 N N N N N N 18.080 19.550 -6.908 4.239 2.811 -2.905 H29A DU2 45
DU2 H29B H29B H 0 0 N N N N N N 19.417 20.410 -6.072 4.274 1.082 -2.482 H29B DU2 46
DU2 "H3'" "H3'" H 0 1 N N N N N N 15.810 19.412 0.041 -1.493 -1.242 -2.573 "H3'" DU2 47
DU2 "H4'" "H4'" H 0 1 N N N N N N 18.244 17.663 -0.284 -0.265 -2.678 -0.153 "H4'" DU2 48
DU2 HO41 HO41 H 0 0 N N N N N N 15.987 17.296 0.869 -1.738 -3.570 -3.190 HO41 DU2 49
DU2 "H5'" "H5'" H 0 1 N N N N N N 16.210 17.610 -1.785 1.189 -1.589 -1.941 "H5'" DU2 50
DU2 "H5'A" "H5'A" H 0 0 N N N N N N 16.576 19.301 -2.277 0.418 -0.036 -1.538 "H5'A" DU2 51
DU2 "HN5'" "HN5'" H 0 0 N N N N N N 17.598 16.965 -3.237 1.869 -1.732 0.388 "HN5'" DU2 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DU2 N1 C2 SING N N 1
DU2 N1 C6 SING N N 2
DU2 N1 "C1'" SING N N 3
DU2 C2 O2 DOUB N N 4
DU2 C2 N3 SING N N 5
DU2 N3 C4 SING N N 6
DU2 C4 O4 DOUB N N 7
DU2 C4 C5 SING N N 8
DU2 C5 C6 DOUB N N 9
DU2 "C1'" "C2'" SING N N 10
DU2 "C1'" "O4'" SING N N 11
DU2 C17 C18 SING N N 12
DU2 C17 C24 SING N N 13
DU2 C17 "N5'" SING N N 14
DU2 C18 C19 DOUB Y N 15
DU2 C18 C23 SING Y N 16
DU2 C19 C20 SING Y N 17
DU2 "C2'" "C3'" SING N N 18
DU2 C20 C21 DOUB Y N 19
DU2 C21 C22 SING Y N 20
DU2 C22 C23 DOUB Y N 21
DU2 C24 N25 DOUB Y N 22
DU2 C24 N28 SING Y N 23
DU2 N25 C26 SING Y N 24
DU2 C26 C27 DOUB Y N 25
DU2 C27 N28 SING Y N 26
DU2 N28 C29 SING N N 27
DU2 "C3'" "C4'" SING N N 28
DU2 "C3'" O41 SING N N 29
DU2 "C4'" "O4'" SING N N 30
DU2 "C4'" "C5'" SING N N 31
DU2 "C5'" "N5'" SING N N 32
DU2 N3 HN3 SING N N 33
DU2 C5 H5 SING N N 34
DU2 C6 H6 SING N N 35
DU2 "C1'" "H1'" SING N N 36
DU2 C17 H17 SING N N 37
DU2 C19 H19 SING N N 38
DU2 "C2'" "H2'" SING N N 39
DU2 "C2'" "H2'A" SING N N 40
DU2 C20 H20 SING N N 41
DU2 C21 H21 SING N N 42
DU2 C22 H22 SING N N 43
DU2 C23 H23 SING N N 44
DU2 C26 H26 SING N N 45
DU2 C27 H27 SING N N 46
DU2 C29 H29 SING N N 47
DU2 C29 H29A SING N N 48
DU2 C29 H29B SING N N 49
DU2 "C3'" "H3'" SING N N 50
DU2 "C4'" "H4'" SING N N 51
DU2 O41 HO41 SING N N 52
DU2 "C5'" "H5'" SING N N 53
DU2 "C5'" "H5'A" SING N N 54
DU2 "N5'" "HN5'" SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DU2 SMILES ACDLabs 12.01 O=C1NC(=O)N(C=C1)C2OC(C(O)C2)CNC(c3ccccc3)c4nccn4C
DU2 InChI InChI 1.03 InChI=1S/C20H23N5O4/c1-24-10-8-21-19(24)18(13-5-3-2-4-6-13)22-12-15-14(26)11-17(29-15)25-9-7-16(27)23-20(25)28/h2-10,14-15,17-18,22,26H,11-12H2,1H3,(H,23,27,28)/t14-,15+,17+,18?/m0/s1
DU2 InChIKey InChI 1.03 KPWKGDCQLFIJMC-URHIDPGUSA-N
DU2 SMILES_CANONICAL CACTVS 3.370 Cn1ccnc1[C@H](NC[C@H]2O[C@H](C[C@@H]2O)N3C=CC(=O)NC3=O)c4ccccc4
DU2 SMILES CACTVS 3.370 Cn1ccnc1[CH](NC[CH]2O[CH](C[CH]2O)N3C=CC(=O)NC3=O)c4ccccc4
DU2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 Cn1ccnc1C(c2ccccc2)NC[C@@H]3[C@H](C[C@@H](O3)N4C=CC(=O)NC4=O)O
DU2 SMILES "OpenEye OEToolkits" 1.7.2 Cn1ccnc1C(c2ccccc2)NCC3C(CC(O3)N4C=CC(=O)NC4=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DU2 "SYSTEMATIC NAME" ACDLabs 12.01 "2',5'-dideoxy-5'-{[(R)-(1-methyl-1H-imidazol-2-yl)(phenyl)methyl]amino}uridine"
DU2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 1-[(2R,4S,5R)-5-[[[(1-methylimidazol-2-yl)-phenyl-methyl]amino]methyl]-4-oxidanyl-oxolan-2-yl]pyrimidine-2,4-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DU2 'Create component' 2011-11-10 PDBJ
DU2 'Modify name' 2012-08-20 PDBJ
DU2 'Modify formula' 2012-08-20 PDBJ
DU2 'Modify name' 2012-08-21 PDBJ
DU2 'Modify formula' 2012-08-21 PDBJ
DU2 'Initial release' 2012-08-24 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DU2 N1 N 5.557 2.845 1
DU2 C2 C 6.856 3.595 2
DU2 O2 O 8.155 2.845 3
DU2 N3 N 6.856 5.095 4
DU2 C4 C 5.557 5.845 5
DU2 O4 O 5.557 7.345 6
DU2 C5 C 4.258 5.095 7
DU2 C6 C 4.258 3.595 8
DU2 "C1'" C 5.557 1.345 9
DU2 C17 C 9.562 -3.234 10
DU2 C18 C 8.951 -4.604 11
DU2 C19 C 7.460 -4.761 12
DU2 "C2'" C 4.343 0.463 13
DU2 C20 C 6.850 -6.131 14
DU2 C21 C 7.731 -7.345 15
DU2 C22 C 9.223 -7.188 16
DU2 C23 C 9.833 -5.818 17
DU2 C24 C 11.053 -3.077 18
DU2 N25 N 12.057 -4.192 19
DU2 C26 C 13.428 -3.582 20
DU2 C27 C 13.271 -2.090 21
DU2 N28 N 11.803 -1.778 22
DU2 C29 C 11.194 -0.408 23
DU2 "C3'" C 4.807 -0.964 24
DU2 "C4'" C 6.307 -0.964 25
DU2 "O4'" O 6.770 0.463 26
DU2 O41 O 3.925 -2.177 27
DU2 "C5'" C 7.188 -2.177 28
DU2 "N5'" N 8.680 -2.020 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DU2 N1 C2 SINGLE NONE 1
DU2 N1 C6 SINGLE NONE 2
DU2 "C1'" N1 SINGLE BEGINDASH 3
DU2 C2 O2 DOUBLE NONE 4
DU2 C2 N3 SINGLE NONE 5
DU2 N3 C4 SINGLE NONE 6
DU2 C4 O4 DOUBLE NONE 7
DU2 C4 C5 SINGLE NONE 8
DU2 C5 C6 DOUBLE NONE 9
DU2 "C1'" "C2'" SINGLE NONE 10
DU2 "C1'" "O4'" SINGLE NONE 11
DU2 C17 C18 SINGLE NONE 12
DU2 C17 C24 SINGLE NONE 13
DU2 C17 "N5'" SINGLE NONE 14
DU2 C18 C19 DOUBLE NONE 15
DU2 C18 C23 SINGLE NONE 16
DU2 C19 C20 SINGLE NONE 17
DU2 "C2'" "C3'" SINGLE NONE 18
DU2 C20 C21 DOUBLE NONE 19
DU2 C21 C22 SINGLE NONE 20
DU2 C22 C23 DOUBLE NONE 21
DU2 C24 N25 DOUBLE NONE 22
DU2 C24 N28 SINGLE NONE 23
DU2 N25 C26 SINGLE NONE 24
DU2 C26 C27 DOUBLE NONE 25
DU2 C27 N28 SINGLE NONE 26
DU2 N28 C29 SINGLE NONE 27
DU2 "C3'" "C4'" SINGLE NONE 28
DU2 "C3'" O41 SINGLE BEGINWEDGE 29
DU2 "C4'" "O4'" SINGLE NONE 30
DU2 "C4'" "C5'" SINGLE BEGINDASH 31
DU2 "C5'" "N5'" SINGLE NONE 32
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DU2 MurckoScaffold S1 scaffold 'O=c1ccn([C@H]2CC[C@@H](CNC(c3ccccc3)c3ncc[nH]3)O2)c(=O)[nH]1' InChI=1S/C19H21N5O3/c25-15-8-11-24(19(26)23-15)16-7-6-14(27-16)12-22-17(18-20-9-10-21-18)13-4-2-1-3-5-13/h1-5,8-11,14,16-17,22H,6-7,12H2,(H,20,21)(H,23,25,26)/t14-,16+,17?/m0/s1 KZTMQWOVXLVYLH-NOYLFRNESA-N
DU2 imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
DU2 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
DU2 pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DU2 N1 S1 1
DU2 C2 S1 1
DU2 O2 S1 1
DU2 N3 S1 1
DU2 C4 S1 1
DU2 O4 S1 1
DU2 C5 S1 1
DU2 C6 S1 1
DU2 "C1'" S1 1
DU2 C17 S1 1
DU2 C18 S1 1
DU2 C19 S1 1
DU2 "C2'" S1 1
DU2 C20 S1 1
DU2 C21 S1 1
DU2 C22 S1 1
DU2 C23 S1 1
DU2 C24 S1 1
DU2 N25 S1 1
DU2 C26 S1 1
DU2 C27 S1 1
DU2 N28 S1 1
DU2 "C3'" S1 1
DU2 "C4'" S1 1
DU2 "O4'" S1 1
DU2 "C5'" S1 1
DU2 "N5'" S1 1
DU2 C26 F1 1
DU2 C27 F1 1
DU2 N28 F1 1
DU2 C24 F1 1
DU2 N25 F1 1
DU2 C18 F2 1
DU2 C19 F2 1
DU2 C20 F2 1
DU2 C21 F2 1
DU2 C22 F2 1
DU2 C23 F2 1
DU2 C5 F3 1
DU2 C4 F3 1
DU2 N3 F3 1
DU2 C2 F3 1
DU2 N1 F3 1
DU2 C6 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DU2
_pdbe_chem_comp_rdkit_properties.exactmw 397.175
_pdbe_chem_comp_rdkit_properties.amw 397.435
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 52
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.350
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.labuteASA 198.680
_pdbe_chem_comp_rdkit_properties.tpsa 114.170
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.988
_pdbe_chem_comp_rdkit_properties.CrippenMR 105.036
_pdbe_chem_comp_rdkit_properties.chi0v 13.869
_pdbe_chem_comp_rdkit_properties.chi1v 7.454
_pdbe_chem_comp_rdkit_properties.chi2v 3.245
_pdbe_chem_comp_rdkit_properties.chi3v 3.245
_pdbe_chem_comp_rdkit_properties.chi4v 2.034
_pdbe_chem_comp_rdkit_properties.chi0n 36.869
_pdbe_chem_comp_rdkit_properties.chi1n 18.757
_pdbe_chem_comp_rdkit_properties.chi2n 3.245
_pdbe_chem_comp_rdkit_properties.chi3n 3.245
_pdbe_chem_comp_rdkit_properties.chi4n 2.034
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.010
_pdbe_chem_comp_rdkit_properties.kappa1 6.005
_pdbe_chem_comp_rdkit_properties.kappa2 8.157
_pdbe_chem_comp_rdkit_properties.kappa3 4.067
_pdbe_chem_comp_rdkit_properties.Phi 1.689
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DU2 UniChem PDBe DU2
DU2 UniChem PubChem 137349196
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DU2 N1 4.231 0.259 -0.686 ETKDGv3 1
DU2 C2 5.626 0.224 -1.054 ETKDGv3 2
DU2 O2 5.975 0.111 -2.260 ETKDGv3 3
DU2 N3 6.626 0.315 -0.037 ETKDGv3 4
DU2 C4 6.226 0.398 1.331 ETKDGv3 5
DU2 O4 7.093 0.481 2.241 ETKDGv3 6
DU2 C5 4.798 0.380 1.673 ETKDGv3 7
DU2 C6 3.872 0.307 0.713 ETKDGv3 8
DU2 "C1'" 3.181 0.120 -1.708 ETKDGv3 9
DU2 C17 -2.260 0.050 0.569 ETKDGv3 10
DU2 C18 -2.812 1.471 0.590 ETKDGv3 11
DU2 C19 -3.491 1.986 -0.457 ETKDGv3 12
DU2 "C2'" 2.726 -1.334 -1.817 ETKDGv3 13
DU2 C20 -4.003 3.371 -0.408 ETKDGv3 14
DU2 C21 -3.797 4.126 0.677 ETKDGv3 15
DU2 C22 -3.057 3.574 1.829 ETKDGv3 16
DU2 C23 -2.591 2.320 1.790 ETKDGv3 17
DU2 C24 -3.348 -0.998 0.557 ETKDGv3 18
DU2 N25 -4.571 -0.763 0.197 ETKDGv3 19
DU2 C26 -5.234 -2.023 0.262 ETKDGv3 20
DU2 C27 -4.386 -2.963 0.640 ETKDGv3 21
DU2 N28 -3.121 -2.370 0.883 ETKDGv3 22
DU2 C29 -1.847 -3.076 0.835 ETKDGv3 23
DU2 "C3'" 1.321 -1.308 -1.282 ETKDGv3 24
DU2 "C4'" 0.917 0.147 -1.485 ETKDGv3 25
DU2 "O4'" 2.076 0.940 -1.383 ETKDGv3 26
DU2 O41 0.480 -2.167 -2.005 ETKDGv3 27
DU2 "C5'" -0.117 0.615 -0.453 ETKDGv3 28
DU2 "N5'" -1.347 -0.182 -0.565 ETKDGv3 29
DU2 HN3 7.640 0.309 -0.291 ETKDGv3 30
DU2 H5 4.494 0.420 2.712 ETKDGv3 31
DU2 H6 2.830 0.283 1.004 ETKDGv3 32
DU2 "H1'" 3.565 0.457 -2.697 ETKDGv3 33
DU2 H17 -1.699 -0.121 1.514 ETKDGv3 34
DU2 H19 -3.680 1.397 -1.344 ETKDGv3 35
DU2 "H2'" 2.734 -1.650 -2.884 ETKDGv3 36
DU2 "H2'A" 3.365 -2.031 -1.230 ETKDGv3 37
DU2 H20 -4.547 3.774 -1.253 ETKDGv3 38
DU2 H21 -4.172 5.141 0.714 ETKDGv3 39
DU2 H22 -2.892 4.188 2.705 ETKDGv3 40
DU2 H23 -2.049 1.929 2.642 ETKDGv3 41
DU2 H26 -6.270 -2.184 -0.003 ETKDGv3 42
DU2 H27 -4.606 -4.020 0.720 ETKDGv3 43
DU2 H29 -1.063 -2.487 1.355 ETKDGv3 44
DU2 H29A -1.549 -3.235 -0.222 ETKDGv3 45
DU2 H29B -1.942 -4.060 1.340 ETKDGv3 46
DU2 "H3'" 1.323 -1.571 -0.197 ETKDGv3 47
DU2 "H4'" 0.493 0.283 -2.507 ETKDGv3 48
DU2 HO41 0.698 -3.089 -1.706 ETKDGv3 49
DU2 "H5'" 0.321 0.519 0.565 ETKDGv3 50
DU2 "H5'A" -0.342 1.690 -0.634 ETKDGv3 51
DU2 "HN5'" -1.822 0.045 -1.469 ETKDGv3 52
#