data_DUX
#
_chem_comp.id DUX
_chem_comp.name 2,3-DEOXY-3-FLUORO-5-O-TRITYLURIDINE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H25 F N2 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 1-{(2S,5S)-4-FLUORO-5-[(TRITYLOXY)METHYL]TETRAHYDROFURAN-2-YL}PYRIMIDINE-2,4(1H,3H)-DIONE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-05-05
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 472.508
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DUX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1VYQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DUX "F3'" "F3'" F 0 1 N N N N N N 37.829 -8.962 -12.615 4.088 -0.520 -1.486 "F3'" DUX 1
DUX "C3'" "C3'" C 0 1 N N S N N N 37.380 -9.638 -11.556 2.848 0.127 -1.494 "C3'" DUX 2
DUX "C2'" "C2'" C 0 1 N N N N N N 36.218 -10.547 -11.964 2.346 0.319 -2.945 "C2'" DUX 3
DUX "C1'" "C1'" C 0 1 N N R N N N 36.522 -11.802 -11.163 1.376 -0.877 -3.114 "C1'" DUX 4
DUX N1 N1 N 0 1 N N N N N N 35.940 -11.840 -9.817 0.380 -0.592 -4.150 N1 DUX 5
DUX C2 C2 C 0 1 N N N N N N 35.849 -13.104 -9.174 -0.448 0.457 -4.006 C2 DUX 6
DUX N3 N3 N 0 1 N N N N N N 35.303 -13.186 -7.936 -1.369 0.744 -4.944 N3 DUX 7
DUX C4 C4 C 0 1 N N N N N N 34.865 -12.083 -7.278 -1.482 -0.026 -6.045 C4 DUX 8
DUX C5 C5 C 0 1 N N N N N N 34.951 -10.821 -7.863 -0.620 -1.137 -6.206 C5 DUX 9
DUX C6 C6 C 0 1 N N N N N N 35.494 -10.732 -9.149 0.298 -1.400 -5.252 C6 DUX 10
DUX O4 O4 O 0 1 N N N N N N 34.402 -12.157 -6.131 -2.319 0.230 -6.892 O4 DUX 11
DUX O2 O2 O 0 1 N N N N N N 36.272 -14.117 -9.780 -0.358 1.161 -3.019 O2 DUX 12
DUX "O4'" "O4'" O 0 1 N N N N N N 37.944 -11.828 -10.984 0.749 -0.988 -1.818 "O4'" DUX 13
DUX "C4'" "C4'" C 0 1 N N R N N N 38.522 -10.505 -11.094 1.774 -0.757 -0.832 "C4'" DUX 14
DUX "C5'" "C5'" C 0 1 N N N N N N 39.152 -9.953 -9.822 1.176 -0.042 0.380 "C5'" DUX 15
DUX "O5'" "O5'" O 0 1 N N N N N N 40.521 -10.439 -9.666 0.170 -0.868 0.971 "O5'" DUX 16
DUX C17 C17 C 0 1 N N N N N N 41.140 -10.542 -8.348 -0.272 -0.197 2.153 C17 DUX 17
DUX C30 C30 C 0 1 Y N N N N N 41.722 -9.167 -8.013 0.853 -0.144 3.153 C30 DUX 18
DUX C31 C31 C 0 1 Y N N N N N 41.558 -8.049 -8.870 1.894 -1.049 3.070 C31 DUX 19
DUX C32 C32 C 0 1 Y N N N N N 42.112 -6.810 -8.539 2.927 -1.000 3.987 C32 DUX 20
DUX C33 C33 C 0 1 Y N N N N N 42.872 -6.658 -7.374 2.919 -0.045 4.987 C33 DUX 21
DUX C34 C34 C 0 1 Y N N N N N 43.066 -7.753 -6.536 1.878 0.859 5.069 C34 DUX 22
DUX C35 C35 C 0 1 Y N N N N N 42.493 -8.999 -6.843 0.847 0.813 4.149 C35 DUX 23
DUX C24 C24 C 0 1 Y N N N N N 40.038 -11.031 -7.431 -0.701 1.204 1.803 C24 DUX 24
DUX C25 C25 C 0 1 Y N N N N N 39.548 -10.275 -6.365 -2.028 1.472 1.526 C25 DUX 25
DUX C26 C26 C 0 1 Y N N N N N 38.509 -10.752 -5.564 -2.421 2.758 1.205 C26 DUX 26
DUX C27 C27 C 0 1 Y N N N N N 37.909 -11.971 -5.842 -1.487 3.776 1.163 C27 DUX 27
DUX C28 C28 C 0 1 Y N N N N N 38.369 -12.744 -6.904 -0.160 3.508 1.442 C28 DUX 28
DUX C29 C29 C 0 1 Y N N N N N 39.422 -12.275 -7.704 0.231 2.223 1.766 C29 DUX 29
DUX C18 C18 C 0 1 Y N N N N N 42.287 -11.539 -8.474 -1.437 -0.945 2.748 C18 DUX 30
DUX C19 C19 C 0 1 Y N N N N N 43.101 -11.563 -9.624 -2.131 -1.865 1.984 C19 DUX 31
DUX C20 C20 C 0 1 Y N N N N N 44.174 -12.479 -9.729 -3.199 -2.552 2.530 C20 DUX 32
DUX C21 C21 C 0 1 Y N N N N N 44.440 -13.407 -8.711 -3.575 -2.318 3.840 C21 DUX 33
DUX C22 C22 C 0 1 Y N N N N N 43.647 -13.385 -7.564 -2.881 -1.398 4.604 C22 DUX 34
DUX C23 C23 C 0 1 Y N N N N N 42.593 -12.466 -7.456 -1.809 -0.715 4.059 C23 DUX 35
DUX "H3'" "H3'" H 0 1 N N N N N N 37.066 -8.938 -10.747 2.918 1.088 -0.984 "H3'" DUX 36
DUX "H2'1" "1H2'" H 0 0 N N N N N N 36.096 -10.700 -13.062 1.817 1.266 -3.052 "H2'1" DUX 37
DUX "H2'2" "2H2'" H 0 0 N N N N N N 35.201 -10.118 -11.809 3.171 0.254 -3.654 "H2'2" DUX 38
DUX "H1'" "H1'" H 0 1 N N N N N N 36.199 -12.701 -11.737 1.927 -1.787 -3.353 "H1'" DUX 39
DUX H3 H3 H 0 1 N N N N N N 35.219 -14.099 -7.488 -1.957 1.507 -4.827 H3 DUX 40
DUX H5 H5 H 0 1 N N N N N N 34.602 -9.921 -7.329 -0.695 -1.766 -7.081 H5 DUX 41
DUX H6 H6 H 0 1 N N N N N N 35.564 -9.745 -9.636 0.965 -2.243 -5.357 H6 DUX 42
DUX "H4'" "H4'" H 0 1 N N N N N N 39.298 -10.524 -11.894 2.213 -1.706 -0.525 "H4'" DUX 43
DUX "H5'1" "1H5'" H 0 0 N N N N N N 38.530 -10.177 -8.924 1.961 0.152 1.111 "H5'1" DUX 44
DUX "H5'2" "2H5'" H 0 0 N N N N N N 39.104 -8.840 -9.788 0.731 0.900 0.064 "H5'2" DUX 45
DUX H31 H31 H 0 1 N N N N N N 40.987 -8.159 -9.807 1.901 -1.795 2.289 H31 DUX 46
DUX H32 H32 H 0 1 N N N N N N 41.949 -5.944 -9.202 3.741 -1.708 3.923 H32 DUX 47
DUX H33 H33 H 0 1 N N N N N N 43.314 -5.679 -7.122 3.726 -0.008 5.704 H33 DUX 48
DUX H34 H34 H 0 1 N N N N N N 43.675 -7.641 -5.623 1.871 1.605 5.851 H34 DUX 49
DUX H35 H35 H 0 1 N N N N N N 42.647 -9.854 -6.163 0.034 1.521 4.214 H35 DUX 50
DUX H25 H25 H 0 1 N N N N N N 39.988 -9.286 -6.152 -2.758 0.676 1.559 H25 DUX 51
DUX H26 H26 H 0 1 N N N N N N 38.163 -10.155 -4.704 -3.458 2.967 0.988 H26 DUX 52
DUX H27 H27 H 0 1 N N N N N N 37.069 -12.327 -5.223 -1.794 4.780 0.912 H27 DUX 53
DUX H28 H28 H 0 1 N N N N N N 37.907 -13.723 -7.116 0.569 4.303 1.408 H28 DUX 54
DUX H29 H29 H 0 1 N N N N N N 39.773 -12.883 -8.555 1.268 2.014 1.984 H29 DUX 55
DUX H19 H19 H 0 1 N N N N N N 42.900 -10.861 -10.450 -1.838 -2.048 0.961 H19 DUX 56
DUX H20 H20 H 0 1 N N N N N N 44.813 -12.463 -10.628 -3.742 -3.270 1.933 H20 DUX 57
DUX H21 H21 H 0 1 N N N N N N 45.259 -14.139 -8.816 -4.410 -2.853 4.266 H21 DUX 58
DUX H22 H22 H 0 1 N N N N N N 43.849 -14.091 -6.741 -3.174 -1.215 5.627 H22 DUX 59
DUX H23 H23 H 0 1 N N N N N N 41.980 -12.468 -6.539 -1.267 0.002 4.656 H23 DUX 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DUX "F3'" "C3'" SING N N 1
DUX "C3'" "C2'" SING N N 2
DUX "C3'" "C4'" SING N N 3
DUX "C3'" "H3'" SING N N 4
DUX "C2'" "C1'" SING N N 5
DUX "C2'" "H2'1" SING N N 6
DUX "C2'" "H2'2" SING N N 7
DUX "C1'" N1 SING N N 8
DUX "C1'" "O4'" SING N N 9
DUX "C1'" "H1'" SING N N 10
DUX N1 C2 SING N N 11
DUX N1 C6 SING N N 12
DUX C2 N3 SING N N 13
DUX C2 O2 DOUB N N 14
DUX N3 C4 SING N N 15
DUX N3 H3 SING N N 16
DUX C4 C5 SING N N 17
DUX C4 O4 DOUB N N 18
DUX C5 C6 DOUB N N 19
DUX C5 H5 SING N N 20
DUX C6 H6 SING N N 21
DUX "O4'" "C4'" SING N N 22
DUX "C4'" "C5'" SING N N 23
DUX "C4'" "H4'" SING N N 24
DUX "C5'" "O5'" SING N N 25
DUX "C5'" "H5'1" SING N N 26
DUX "C5'" "H5'2" SING N N 27
DUX "O5'" C17 SING N N 28
DUX C17 C30 SING N N 29
DUX C17 C24 SING N N 30
DUX C17 C18 SING N N 31
DUX C30 C31 DOUB Y N 32
DUX C30 C35 SING Y N 33
DUX C31 C32 SING Y N 34
DUX C31 H31 SING N N 35
DUX C32 C33 DOUB Y N 36
DUX C32 H32 SING N N 37
DUX C33 C34 SING Y N 38
DUX C33 H33 SING N N 39
DUX C34 C35 DOUB Y N 40
DUX C34 H34 SING N N 41
DUX C35 H35 SING N N 42
DUX C24 C25 DOUB Y N 43
DUX C24 C29 SING Y N 44
DUX C25 C26 SING Y N 45
DUX C25 H25 SING N N 46
DUX C26 C27 DOUB Y N 47
DUX C26 H26 SING N N 48
DUX C27 C28 SING Y N 49
DUX C27 H27 SING N N 50
DUX C28 C29 DOUB Y N 51
DUX C28 H28 SING N N 52
DUX C29 H29 SING N N 53
DUX C18 C19 DOUB Y N 54
DUX C18 C23 SING Y N 55
DUX C19 C20 SING Y N 56
DUX C19 H19 SING N N 57
DUX C20 C21 DOUB Y N 58
DUX C20 H20 SING N N 59
DUX C21 C22 SING Y N 60
DUX C21 H21 SING N N 61
DUX C22 C23 DOUB Y N 62
DUX C22 H22 SING N N 63
DUX C23 H23 SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DUX SMILES ACDLabs 10.04 O=C1NC(=O)N(C=C1)C2OC(C(F)C2)COC(c3ccccc3)(c4ccccc4)c5ccccc5
DUX SMILES_CANONICAL CACTVS 3.341 F[C@H]1C[C@@H](O[C@@H]1COC(c2ccccc2)(c3ccccc3)c4ccccc4)N5C=CC(=O)NC5=O
DUX SMILES CACTVS 3.341 F[CH]1C[CH](O[CH]1COC(c2ccccc2)(c3ccccc3)c4ccccc4)N5C=CC(=O)NC5=O
DUX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)C(c2ccccc2)(c3ccccc3)OC[C@@H]4[C@H](C[C@@H](O4)N5C=CC(=O)NC5=O)F
DUX SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)C(c2ccccc2)(c3ccccc3)OCC4C(CC(O4)N5C=CC(=O)NC5=O)F
DUX InChI InChI 1.03 InChI=1S/C28H25FN2O4/c29-23-18-26(31-17-16-25(32)30-27(31)33)35-24(23)19-34-28(20-10-4-1-5-11-20,21-12-6-2-7-13-21)22-14-8-3-9-15-22/h1-17,23-24,26H,18-19H2,(H,30,32,33)/t23-,24+,26+/m0/s1
DUX InChIKey InChI 1.03 GJNIPWYJQUGERM-BFLUCZKCSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DUX "SYSTEMATIC NAME" ACDLabs 10.04 "2',3'-dideoxy-3'-fluoro-5'-O-trityluridine"
DUX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 1-[(2R,4S,5R)-4-fluoro-5-(trityloxymethyl)oxolan-2-yl]pyrimidine-2,4-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DUX 'Create component' 2004-05-05 EBI
DUX 'Modify descriptor' 2011-06-04 RCSB
DUX 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id DUX
_pdbx_chem_comp_synonyms.name 1-{(2S,5S)-4-FLUORO-5-[(TRITYLOXY)METHYL]TETRAHYDROFURAN-2-YL}PYRIMIDINE-2,4(1H,3H)-DIONE
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id DUX
_pdbe_chem_comp_drugbank_details.drugbank_id DB04685
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'1-{(2S,5S)-4-FLUORO-5-[(TRITYLOXY)METHYL]TETRAHYDROFURAN-2-YL}PYRIMIDINE-2,4(1H,3H)-DIONE'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id DUX
_pdbe_chem_comp_synonyms.name '1-{(2S,5S)-4-FLUORO-5-[(TRITYLOXY)METHYL]TETRAHYDROFURAN-2-YL}PYRIMIDINE-2,4(1H,3H)-DIONE'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DUX
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04685
_pdbe_chem_comp_drugbank_classification.parent 'Triphenyl compounds'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Triphenyl compounds'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as triphenyl compounds. These are aromatic compounds containing a triphenyl moiety.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
DUX DB04685 "Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial" Humans P33316 unknown 1
DUX DB04685 "Deoxyuridine 5'-triphosphate nucleotidohydrolase, putative" 'Plasmodium falciparum (isolate 3D7)' Q8II92 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DUX "F3'" F 3.000 -2.334 1
DUX "C3'" C 3.882 -1.120 2
DUX "C2'" C 3.418 0.306 3
DUX "C1'" C 4.632 1.188 4
DUX N1 N 4.632 2.688 5
DUX C2 C 5.931 3.438 6
DUX N3 N 5.931 4.938 7
DUX C4 C 4.632 5.688 8
DUX C5 C 3.333 4.938 9
DUX C6 C 3.333 3.438 10
DUX O4 O 4.632 7.188 11
DUX O2 O 7.230 2.688 12
DUX "O4'" O 5.845 0.306 13
DUX "C4'" C 5.382 -1.120 14
DUX "C5'" C 6.263 -2.334 15
DUX "O5'" O 7.755 -2.177 16
DUX C17 C 8.637 -3.391 17
DUX C30 C 9.518 -4.604 18
DUX C31 C 8.908 -5.974 19
DUX C32 C 9.790 -7.188 20
DUX C33 C 11.282 -7.031 21
DUX C34 C 11.892 -5.661 22
DUX C35 C 11.010 -4.447 23
DUX C24 C 9.850 -2.509 24
DUX C25 C 11.221 -3.119 25
DUX C26 C 12.434 -2.237 26
DUX C27 C 12.277 -0.746 27
DUX C28 C 10.907 -0.136 28
DUX C29 C 9.694 -1.017 29
DUX C18 C 7.423 -4.272 30
DUX C19 C 6.053 -3.662 31
DUX C20 C 4.840 -4.544 32
DUX C21 C 4.996 -6.035 33
DUX C22 C 6.367 -6.646 34
DUX C23 C 7.580 -5.764 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DUX "C3'" "F3'" SINGLE BEGINWEDGE 1
DUX "C3'" "C2'" SINGLE NONE 2
DUX "C3'" "C4'" SINGLE NONE 3
DUX "C2'" "C1'" SINGLE NONE 4
DUX "C1'" N1 SINGLE BEGINDASH 5
DUX "C1'" "O4'" SINGLE NONE 6
DUX N1 C2 SINGLE NONE 7
DUX N1 C6 SINGLE NONE 8
DUX C2 N3 SINGLE NONE 9
DUX C2 O2 DOUBLE NONE 10
DUX N3 C4 SINGLE NONE 11
DUX C4 C5 SINGLE NONE 12
DUX C4 O4 DOUBLE NONE 13
DUX C5 C6 DOUBLE NONE 14
DUX "O4'" "C4'" SINGLE NONE 15
DUX "C4'" "C5'" SINGLE BEGINDASH 16
DUX "C5'" "O5'" SINGLE NONE 17
DUX "O5'" C17 SINGLE NONE 18
DUX C17 C30 SINGLE NONE 19
DUX C17 C24 SINGLE NONE 20
DUX C17 C18 SINGLE NONE 21
DUX C30 C31 DOUBLE NONE 22
DUX C30 C35 SINGLE NONE 23
DUX C31 C32 SINGLE NONE 24
DUX C32 C33 DOUBLE NONE 25
DUX C33 C34 SINGLE NONE 26
DUX C34 C35 DOUBLE NONE 27
DUX C24 C25 DOUBLE NONE 28
DUX C24 C29 SINGLE NONE 29
DUX C25 C26 SINGLE NONE 30
DUX C26 C27 DOUBLE NONE 31
DUX C27 C28 SINGLE NONE 32
DUX C28 C29 DOUBLE NONE 33
DUX C18 C19 DOUBLE NONE 34
DUX C18 C23 SINGLE NONE 35
DUX C19 C20 SINGLE NONE 36
DUX C20 C21 DOUBLE NONE 37
DUX C21 C22 SINGLE NONE 38
DUX C22 C23 DOUBLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DUX MurckoScaffold S1 scaffold 'O=c1ccn([C@H]2CC[C@@H](COC(c3ccccc3)(c3ccccc3)c3ccccc3)O2)c(=O)[nH]1' InChI=1S/C28H26N2O4/c31-25-18-19-30(27(32)29-25)26-17-16-24(34-26)20-33-28(21-10-4-1-5-11-21,22-12-6-2-7-13-22)23-14-8-3-9-15-23/h1-15,18-19,24,26H,16-17,20H2,(H,29,31,32)/t24-,26+/m0/s1 XLZWZKQCXGAFRX-AZGAKELHSA-N
DUX phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
DUX pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DUX "C3'" S1 1
DUX "C2'" S1 1
DUX "C1'" S1 1
DUX N1 S1 1
DUX C2 S1 1
DUX N3 S1 1
DUX C4 S1 1
DUX C5 S1 1
DUX C6 S1 1
DUX O4 S1 1
DUX O2 S1 1
DUX "O4'" S1 1
DUX "C4'" S1 1
DUX "C5'" S1 1
DUX "O5'" S1 1
DUX C17 S1 1
DUX C30 S1 1
DUX C31 S1 1
DUX C32 S1 1
DUX C33 S1 1
DUX C34 S1 1
DUX C35 S1 1
DUX C24 S1 1
DUX C25 S1 1
DUX C26 S1 1
DUX C27 S1 1
DUX C28 S1 1
DUX C29 S1 1
DUX C18 S1 1
DUX C19 S1 1
DUX C20 S1 1
DUX C21 S1 1
DUX C22 S1 1
DUX C23 S1 1
DUX C30 F1 1
DUX C31 F1 1
DUX C32 F1 1
DUX C33 F1 1
DUX C34 F1 1
DUX C35 F1 1
DUX C24 F1 2
DUX C25 F1 2
DUX C26 F1 2
DUX C27 F1 2
DUX C28 F1 2
DUX C29 F1 2
DUX C18 F1 3
DUX C19 F1 3
DUX C20 F1 3
DUX C21 F1 3
DUX C22 F1 3
DUX C23 F1 3
DUX C5 F2 1
DUX C4 F2 1
DUX N3 F2 1
DUX C2 F2 1
DUX N1 F2 1
DUX C6 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DUX
_pdbe_chem_comp_rdkit_properties.exactmw 472.180
_pdbe_chem_comp_rdkit_properties.amw 472.516
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 60
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.214
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 236.334
_pdbe_chem_comp_rdkit_properties.tpsa 73.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.807
_pdbe_chem_comp_rdkit_properties.CrippenMR 129.324
_pdbe_chem_comp_rdkit_properties.chi0v 16.905
_pdbe_chem_comp_rdkit_properties.chi1v 9.282
_pdbe_chem_comp_rdkit_properties.chi2v 4.334
_pdbe_chem_comp_rdkit_properties.chi3v 4.334
_pdbe_chem_comp_rdkit_properties.chi4v 2.868
_pdbe_chem_comp_rdkit_properties.chi0n 41.905
_pdbe_chem_comp_rdkit_properties.chi1n 21.729
_pdbe_chem_comp_rdkit_properties.chi2n 4.334
_pdbe_chem_comp_rdkit_properties.chi3n 4.334
_pdbe_chem_comp_rdkit_properties.chi4n 2.868
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.810
_pdbe_chem_comp_rdkit_properties.kappa1 7.847
_pdbe_chem_comp_rdkit_properties.kappa2 9.817
_pdbe_chem_comp_rdkit_properties.kappa3 4.479
_pdbe_chem_comp_rdkit_properties.Phi 2.201
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DUX UniChem ChEMBL CHEMBL209720
DUX UniChem DrugBank DB04685
DUX UniChem PDBe DUX
DUX UniChem ZINC ZINC000012504465
DUX UniChem SureChEMBL SCHEMBL3571173
DUX UniChem BindingDb 50190544
DUX UniChem BRENDA 9900
DUX UniChem 'Probes And Drugs' PD005903
DUX UniChem PubChem 4369390
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DUX "F3'" 1.366 0.442 -3.032 ETKDGv3 1
DUX "C3'" 1.996 0.044 -1.865 ETKDGv3 2
DUX "C2'" 3.491 0.043 -2.020 ETKDGv3 3
DUX "C1'" 3.995 0.640 -0.705 ETKDGv3 4
DUX N1 4.862 -0.312 0.009 ETKDGv3 5
DUX C2 4.322 -1.462 0.696 ETKDGv3 6
DUX N3 5.208 -2.375 1.346 ETKDGv3 7
DUX C4 6.616 -2.149 1.279 ETKDGv3 8
DUX C5 7.132 -0.990 0.541 ETKDGv3 9
DUX C6 6.293 -0.138 -0.056 ETKDGv3 10
DUX O4 7.412 -2.943 1.847 ETKDGv3 11
DUX O2 3.080 -1.675 0.726 ETKDGv3 12
DUX "O4'" 2.893 0.996 0.102 ETKDGv3 13
DUX "C4'" 1.771 1.047 -0.745 ETKDGv3 14
DUX "C5'" 0.499 0.761 0.059 ETKDGv3 15
DUX "O5'" -0.641 0.992 -0.756 ETKDGv3 16
DUX C17 -1.870 0.511 -0.194 ETKDGv3 17
DUX C30 -2.068 1.141 1.207 ETKDGv3 18
DUX C31 -1.674 0.514 2.340 ETKDGv3 19
DUX C32 -1.798 1.174 3.656 ETKDGv3 20
DUX C33 -2.250 2.429 3.737 ETKDGv3 21
DUX C34 -2.610 3.161 2.510 ETKDGv3 22
DUX C35 -2.512 2.563 1.317 ETKDGv3 23
DUX C24 -1.931 -1.028 -0.217 ETKDGv3 24
DUX C25 -1.269 -1.725 -1.166 ETKDGv3 25
DUX C26 -1.385 -3.195 -1.250 ETKDGv3 26
DUX C27 -2.203 -3.852 -0.423 ETKDGv3 27
DUX C28 -3.005 -3.105 0.563 ETKDGv3 28
DUX C29 -2.890 -1.775 0.653 ETKDGv3 29
DUX C18 -3.018 0.948 -1.116 ETKDGv3 30
DUX C19 -2.802 1.243 -2.419 ETKDGv3 31
DUX C20 -3.925 1.600 -3.310 ETKDGv3 32
DUX C21 -5.177 1.603 -2.845 ETKDGv3 33
DUX C22 -5.442 1.245 -1.440 ETKDGv3 34
DUX C23 -4.429 0.929 -0.625 ETKDGv3 35
DUX "H3'" 1.658 -0.974 -1.574 ETKDGv3 36
DUX "H2'1" 3.796 0.691 -2.872 ETKDGv3 37
DUX "H2'2" 3.872 -0.987 -2.198 ETKDGv3 38
DUX "H1'" 4.560 1.573 -0.927 ETKDGv3 39
DUX H3 4.830 -3.204 1.858 ETKDGv3 40
DUX H5 8.201 -0.826 0.476 ETKDGv3 41
DUX H6 6.710 0.703 -0.598 ETKDGv3 42
DUX "H4'" 1.699 2.075 -1.171 ETKDGv3 43
DUX "H5'1" 0.535 -0.279 0.451 ETKDGv3 44
DUX "H5'2" 0.496 1.467 0.917 ETKDGv3 45
DUX H31 -1.236 -0.475 2.313 ETKDGv3 46
DUX H32 -1.514 0.640 4.553 ETKDGv3 47
DUX H33 -2.336 2.915 4.701 ETKDGv3 48
DUX H34 -2.938 4.190 2.576 ETKDGv3 49
DUX H35 -2.752 3.131 0.428 ETKDGv3 50
DUX H25 -0.659 -1.222 -1.901 ETKDGv3 51
DUX H26 -0.811 -3.738 -1.990 ETKDGv3 52
DUX H27 -2.294 -4.928 -0.488 ETKDGv3 53
DUX H28 -3.698 -3.635 1.203 ETKDGv3 54
DUX H29 -3.513 -1.249 1.364 ETKDGv3 55
DUX H19 -1.809 1.216 -2.847 ETKDGv3 56
DUX H20 -3.730 1.853 -4.344 ETKDGv3 57
DUX H21 -6.000 1.861 -3.500 ETKDGv3 58
DUX H22 -6.459 1.234 -1.071 ETKDGv3 59
DUX H23 -4.648 0.665 0.401 ETKDGv3 60
#