data_DV0
#
_chem_comp.id DV0
_chem_comp.name
1-[(5~{R},8~{R},15~{S},18~{S})-15,18-bis(4-azanylbutyl)-5-methyl-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H52 N10 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-09-03
_chem_comp.pdbx_modified_date 2020-06-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 644.809
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DV0
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6KK6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DV0 C10 C1 C 0 1 N N R N N N 6.565 -13.006 5.465 2.413 3.902 0.521 C10 DV0 1
DV0 C15 C2 C 0 1 N N N N N N 5.624 -13.605 6.571 1.485 5.055 0.135 C15 DV0 2
DV0 C17 C3 C 0 1 N N N N N N 3.417 -14.715 7.007 -0.759 4.032 -0.266 C17 DV0 3
DV0 C20 C4 C 0 1 N N N N N N 1.799 -14.829 4.049 -3.036 1.803 0.106 C20 DV0 4
DV0 C22 C5 C 0 1 N N S N N N 1.060 -13.796 3.244 -3.762 0.664 -0.562 C22 DV0 5
DV0 C24 C6 C 0 1 N N N N N N -0.114 -13.452 1.005 -6.010 -0.253 -1.153 C24 DV0 6
DV0 C26 C7 C 0 1 N N N N N N -1.920 -11.846 0.441 -8.257 -1.171 -1.745 C26 DV0 7
DV0 C01 C8 C 0 1 Y N N N N N 10.203 -11.234 1.063 5.096 -4.269 0.148 C01 DV0 8
DV0 C02 C9 C 0 1 Y N N N N N 9.586 -12.478 1.243 4.562 -3.126 -0.416 C02 DV0 9
DV0 C03 C10 C 0 1 N N N N N N 10.399 -13.704 1.641 5.364 -1.850 -0.438 C03 DV0 10
DV0 C05 C11 C 0 1 N N N N N N 9.388 -15.569 2.972 4.703 0.463 -0.426 C05 DV0 11
DV0 C06 C12 C 0 1 N N R N N N 8.853 -15.977 4.342 3.908 1.625 0.113 C06 DV0 12
DV0 C07 C13 C 0 1 N N N N N N 9.909 -16.609 5.224 4.044 1.676 1.636 C07 DV0 13
DV0 C09 C14 C 0 1 N N N N N N 7.157 -14.162 4.632 3.691 3.999 -0.271 C09 DV0 14
DV0 C12 C15 C 0 1 N N N N N N 8.407 -11.336 5.507 1.371 2.329 -1.057 C12 DV0 15
DV0 C16 C16 C 0 1 N N N N N N 4.445 -14.370 5.882 0.097 4.815 0.732 C16 DV0 16
DV0 C18 C17 C 0 1 N N N N N N 2.268 -15.548 6.411 -2.224 4.076 0.172 C18 DV0 17
DV0 C23 C18 C 0 1 N N N N N N 0.451 -14.453 2.011 -5.271 0.834 -0.371 C23 DV0 18
DV0 C25 C19 C 0 1 N N N N N N -1.431 -12.824 1.501 -7.518 -0.083 -0.962 C25 DV0 19
DV0 C29 C20 C 0 1 N N N N N N 1.925 -11.468 3.221 -2.428 -1.337 -0.677 C29 DV0 20
DV0 C31 C21 C 0 1 N N S N N N 2.896 -10.469 2.615 -1.915 -2.635 -0.108 C31 DV0 21
DV0 C32 C22 C 0 1 N N N N N N 1.952 -9.531 1.777 -1.172 -2.362 1.201 C32 DV0 22
DV0 C33 C23 C 0 1 N N N N N N 2.724 -8.350 1.240 -2.080 -1.576 2.149 C33 DV0 23
DV0 C34 C24 C 0 1 N N N N N N 1.669 -7.441 0.524 -1.399 -1.438 3.512 C34 DV0 24
DV0 C35 C25 C 0 1 N N N N N N 2.370 -6.269 -0.142 -2.307 -0.652 4.459 C35 DV0 25
DV0 C38 C26 C 0 1 N N N N N N 5.135 -11.285 1.806 0.198 -3.699 -0.596 C38 DV0 26
DV0 C40 C27 C 0 1 N N N N N N 5.959 -11.729 0.593 1.173 -4.353 -1.540 C40 DV0 27
DV0 C41 C28 C 0 1 Y N N N N N 7.462 -11.484 0.753 2.556 -4.323 -0.943 C41 DV0 28
DV0 C42 C29 C 0 1 Y N N N N N 8.205 -12.584 1.100 3.291 -3.153 -0.962 C42 DV0 29
DV0 C43 C30 C 0 1 Y N N N N N 8.070 -10.233 0.514 3.091 -5.466 -0.378 C43 DV0 30
DV0 C44 C31 C 0 1 Y N N N N N 9.452 -10.128 0.640 4.361 -5.439 0.167 C44 DV0 31
DV0 N04 N1 N 0 1 N N N N N N 9.886 -14.261 2.920 4.544 -0.766 0.149 N04 DV0 32
DV0 N08 N2 N 0 1 N N N N N N 8.304 -14.805 5.121 4.431 2.874 -0.474 N08 DV0 33
DV0 N11 N3 N 0 1 N N N N N N 7.604 -12.272 6.178 1.754 2.626 0.229 N11 DV0 34
DV0 N13 N4 N 0 1 N N N N N N 8.254 -11.049 4.267 1.686 3.133 -2.033 N13 DV0 35
DV0 N14 N5 N 0 1 N N N N N N 9.406 -10.748 6.369 0.657 1.183 -1.314 N14 DV0 36
DV0 N19 N6 N 0 1 N N N N N N 1.588 -14.643 5.430 -2.963 3.006 -0.528 N19 DV0 37
DV0 N27 N7 N 0 1 N N N N N N -3.253 -11.336 0.751 -9.706 -1.007 -1.561 N27 DV0 38
DV0 N28 N8 N 0 1 N N N N N N 2.021 -12.794 2.821 -3.318 -0.605 0.058 N28 DV0 39
DV0 N36 N9 N 0 1 N N N N N N 1.370 -5.489 -0.860 -1.653 -0.521 5.768 N36 DV0 40
DV0 N37 N10 N 0 1 N N N N N N 3.759 -11.035 1.542 -0.994 -3.254 -1.081 N37 DV0 41
DV0 O21 O1 O 0 1 N N N N N N 2.489 -15.751 3.639 -2.522 1.650 1.194 O21 DV0 42
DV0 O30 O2 O 0 1 N N N N N N 1.090 -11.129 4.034 -2.058 -0.949 -1.765 O30 DV0 43
DV0 O39 O3 O 0 1 N N N N N N 5.640 -11.097 2.840 0.470 -3.571 0.579 O39 DV0 44
DV0 O45 O4 O 0 1 N N N N N N 6.636 -14.480 3.571 4.056 5.064 -0.721 O45 DV0 45
DV0 O46 O5 O 0 1 N N N N N N 9.401 -16.338 2.032 5.469 0.617 -1.354 O46 DV0 46
DV0 H1 H1 H 0 1 N N N N N N 5.985 -12.336 4.814 2.640 3.959 1.586 H1 DV0 47
DV0 H2 H2 H 0 1 N N N N N N 6.195 -14.301 7.203 1.889 5.991 0.521 H2 DV0 48
DV0 H3 H3 H 0 1 N N N N N N 5.222 -12.791 7.192 1.408 5.113 -0.950 H3 DV0 49
DV0 H4 H4 H 0 1 N N N N N N 3.918 -15.293 7.797 -0.662 4.478 -1.256 H4 DV0 50
DV0 H5 H5 H 0 1 N N N N N N 3.013 -13.785 7.433 -0.421 2.996 -0.300 H5 DV0 51
DV0 H6 H6 H 0 1 N N N N N N 0.265 -13.341 3.854 -3.527 0.653 -1.626 H6 DV0 52
DV0 H7 H7 H 0 1 N N N N N N -0.303 -13.971 0.054 -5.766 -0.168 -2.212 H7 DV0 53
DV0 H8 H8 H 0 1 N N N N N N 0.624 -12.652 0.846 -5.706 -1.234 -0.788 H8 DV0 54
DV0 H9 H9 H 0 1 N N N N N N -1.952 -12.360 -0.531 -8.014 -1.085 -2.804 H9 DV0 55
DV0 H10 H10 H 0 1 N N N N N N -1.219 -11.000 0.385 -7.953 -2.151 -1.380 H10 DV0 56
DV0 H11 H11 H 0 1 N N N N N N 11.261 -11.126 1.251 6.088 -4.248 0.574 H11 DV0 57
DV0 H12 H12 H 0 1 N N N N N N 10.317 -14.467 0.853 6.273 -1.980 0.149 H12 DV0 58
DV0 H13 H13 H 0 1 N N N N N N 11.454 -13.417 1.766 5.622 -1.598 -1.466 H13 DV0 59
DV0 H14 H14 H 0 1 N N N N N N 8.043 -16.706 4.193 2.859 1.506 -0.158 H14 DV0 60
DV0 H15 H15 H 0 1 N N N N N N 9.464 -16.880 6.193 5.079 1.893 1.901 H15 DV0 61
DV0 H16 H16 H 0 1 N N N N N N 10.302 -17.513 4.735 3.396 2.458 2.032 H16 DV0 62
DV0 H17 H17 H 0 1 N N N N N N 10.729 -15.893 5.384 3.754 0.715 2.059 H17 DV0 63
DV0 H18 H18 H 0 1 N N N N N N 3.973 -13.733 5.120 0.192 4.243 1.655 H18 DV0 64
DV0 H19 H19 H 0 1 N N N N N N 4.815 -15.292 5.411 -0.378 5.772 0.945 H19 DV0 65
DV0 H20 H20 H 0 1 N N N N N N 1.567 -15.856 7.200 -2.288 3.920 1.249 H20 DV0 66
DV0 H21 H21 H 0 1 N N N N N N 2.663 -16.440 5.902 -2.653 5.045 -0.083 H21 DV0 67
DV0 H22 H22 H 0 1 N N N N N N -0.363 -15.117 2.336 -5.515 0.748 0.688 H22 DV0 68
DV0 H23 H23 H 0 1 N N N N N N 1.231 -15.047 1.511 -5.575 1.815 -0.736 H23 DV0 69
DV0 H24 H24 H 0 1 N N N N N N -1.256 -12.291 2.447 -7.762 -0.169 0.097 H24 DV0 70
DV0 H25 H25 H 0 1 N N N N N N -2.183 -13.611 1.657 -7.823 0.898 -1.327 H25 DV0 71
DV0 H26 H26 H 0 1 N N N N N N 3.460 -9.910 3.376 -2.752 -3.307 0.081 H26 DV0 72
DV0 H27 H27 H 0 1 N N N N N N 1.137 -9.169 2.421 -0.894 -3.308 1.666 H27 DV0 73
DV0 H28 H28 H 0 1 N N N N N N 1.529 -10.100 0.936 -0.273 -1.781 0.995 H28 DV0 74
DV0 H29 H29 H 0 1 N N N N N N 3.489 -8.686 0.524 -2.267 -0.585 1.735 H29 DV0 75
DV0 H30 H30 H 0 1 N N N N N N 3.207 -7.802 2.062 -3.026 -2.105 2.267 H30 DV0 76
DV0 H31 H31 H 0 1 N N N N N N 0.949 -7.063 1.265 -1.212 -2.429 3.926 H31 DV0 77
DV0 H32 H32 H 0 1 N N N N N N 1.137 -8.029 -0.238 -0.453 -0.910 3.393 H32 DV0 78
DV0 H33 H33 H 0 1 N N N N N N 3.129 -6.640 -0.846 -2.494 0.338 4.045 H33 DV0 79
DV0 H34 H34 H 0 1 N N N N N N 2.854 -5.642 0.621 -3.253 -1.181 4.578 H34 DV0 80
DV0 H35 H35 H 0 1 N N N N N N 5.608 -11.173 -0.289 0.874 -5.388 -1.710 H35 DV0 81
DV0 H36 H36 H 0 1 N N N N N N 5.796 -12.806 0.437 1.176 -3.817 -2.488 H36 DV0 82
DV0 H37 H37 H 0 1 N N N N N N 7.718 -13.534 1.263 2.874 -2.259 -1.402 H37 DV0 83
DV0 H38 H38 H 0 1 N N N N N N 7.475 -9.375 0.239 2.515 -6.380 -0.362 H38 DV0 84
DV0 H39 H39 H 0 1 N N N N N N 9.946 -9.195 0.412 4.779 -6.333 0.607 H39 DV0 85
DV0 H40 H40 H 0 1 N N N N N N 9.896 -13.699 3.747 3.937 -0.917 0.890 H40 DV0 86
DV0 H41 H41 H 0 1 N N N N N N 8.746 -14.496 5.963 5.260 2.893 -0.977 H41 DV0 87
DV0 H42 H42 H 0 1 N N N N N N 7.746 -12.437 7.154 1.587 1.992 0.944 H42 DV0 88
DV0 H43 H43 H 0 1 N N N N N N 8.912 -10.363 3.957 1.480 2.888 -2.949 H43 DV0 89
DV0 H44 H44 H 0 1 N N N N N N 9.463 -11.024 7.329 0.423 0.584 -0.587 H44 DV0 90
DV0 H45 H45 H 0 1 N N N N N N 10.040 -10.065 6.006 0.387 0.973 -2.221 H45 DV0 91
DV0 H46 H46 H 0 1 N N N N N N 0.988 -13.911 5.753 -3.374 3.152 -1.394 H46 DV0 92
DV0 H47 H47 H 0 1 N N N N N N -3.541 -10.699 0.036 -10.217 -1.714 -2.069 H47 DV0 93
DV0 H48 H48 H 0 1 N N N N N N -3.899 -12.098 0.798 -9.950 -1.018 -0.582 H48 DV0 94
DV0 H50 H50 H 0 1 N N N N N N 2.775 -13.067 2.223 -3.637 -0.898 0.927 H50 DV0 95
DV0 H51 H51 H 0 1 N N N N N N 1.811 -4.711 -1.307 -0.744 -0.091 5.676 H51 DV0 96
DV0 H52 H52 H 0 1 N N N N N N 0.931 -6.064 -1.550 -2.233 -0.005 6.412 H52 DV0 97
DV0 H54 H54 H 0 1 N N N N N N 3.374 -11.238 0.642 -1.226 -3.341 -2.019 H54 DV0 98
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DV0 N36 C35 SING N N 1
DV0 C35 C34 SING N N 2
DV0 C26 N27 SING N N 3
DV0 C26 C25 SING N N 4
DV0 C43 C44 DOUB Y N 5
DV0 C43 C41 SING Y N 6
DV0 C34 C33 SING N N 7
DV0 C40 C41 SING N N 8
DV0 C40 C38 SING N N 9
DV0 C44 C01 SING Y N 10
DV0 C41 C42 DOUB Y N 11
DV0 C24 C25 SING N N 12
DV0 C24 C23 SING N N 13
DV0 C01 C02 DOUB Y N 14
DV0 C42 C02 SING Y N 15
DV0 C33 C32 SING N N 16
DV0 C02 C03 SING N N 17
DV0 N37 C38 SING N N 18
DV0 N37 C31 SING N N 19
DV0 C03 N04 SING N N 20
DV0 C32 C31 SING N N 21
DV0 C38 O39 DOUB N N 22
DV0 C23 C22 SING N N 23
DV0 O46 C05 DOUB N N 24
DV0 C31 C29 SING N N 25
DV0 N28 C29 SING N N 26
DV0 N28 C22 SING N N 27
DV0 N04 C05 SING N N 28
DV0 C05 C06 SING N N 29
DV0 C29 O30 DOUB N N 30
DV0 C22 C20 SING N N 31
DV0 O45 C09 DOUB N N 32
DV0 O21 C20 DOUB N N 33
DV0 C20 N19 SING N N 34
DV0 N13 C12 DOUB N N 35
DV0 C06 N08 SING N N 36
DV0 C06 C07 SING N N 37
DV0 C09 N08 SING N N 38
DV0 C09 C10 SING N N 39
DV0 N19 C18 SING N N 40
DV0 C10 N11 SING N N 41
DV0 C10 C15 SING N N 42
DV0 C12 N11 SING N N 43
DV0 C12 N14 SING N N 44
DV0 C16 C15 SING N N 45
DV0 C16 C17 SING N N 46
DV0 C18 C17 SING N N 47
DV0 C10 H1 SING N N 48
DV0 C15 H2 SING N N 49
DV0 C15 H3 SING N N 50
DV0 C17 H4 SING N N 51
DV0 C17 H5 SING N N 52
DV0 C22 H6 SING N N 53
DV0 C24 H7 SING N N 54
DV0 C24 H8 SING N N 55
DV0 C26 H9 SING N N 56
DV0 C26 H10 SING N N 57
DV0 C01 H11 SING N N 58
DV0 C03 H12 SING N N 59
DV0 C03 H13 SING N N 60
DV0 C06 H14 SING N N 61
DV0 C07 H15 SING N N 62
DV0 C07 H16 SING N N 63
DV0 C07 H17 SING N N 64
DV0 C16 H18 SING N N 65
DV0 C16 H19 SING N N 66
DV0 C18 H20 SING N N 67
DV0 C18 H21 SING N N 68
DV0 C23 H22 SING N N 69
DV0 C23 H23 SING N N 70
DV0 C25 H24 SING N N 71
DV0 C25 H25 SING N N 72
DV0 C31 H26 SING N N 73
DV0 C32 H27 SING N N 74
DV0 C32 H28 SING N N 75
DV0 C33 H29 SING N N 76
DV0 C33 H30 SING N N 77
DV0 C34 H31 SING N N 78
DV0 C34 H32 SING N N 79
DV0 C35 H33 SING N N 80
DV0 C35 H34 SING N N 81
DV0 C40 H35 SING N N 82
DV0 C40 H36 SING N N 83
DV0 C42 H37 SING N N 84
DV0 C43 H38 SING N N 85
DV0 C44 H39 SING N N 86
DV0 N04 H40 SING N N 87
DV0 N08 H41 SING N N 88
DV0 N11 H42 SING N N 89
DV0 N13 H43 SING N N 90
DV0 N14 H44 SING N N 91
DV0 N14 H45 SING N N 92
DV0 N19 H46 SING N N 93
DV0 N27 H47 SING N N 94
DV0 N27 H48 SING N N 95
DV0 N28 H50 SING N N 96
DV0 N36 H51 SING N N 97
DV0 N36 H52 SING N N 98
DV0 N37 H54 SING N N 99
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DV0 InChI InChI 1.03 InChI=1S/C31H52N10O5/c1-20-27(43)37-19-22-10-8-9-21(17-22)18-26(42)39-24(12-3-6-15-33)30(46)40-23(11-2-5-14-32)28(44)36-16-7-4-13-25(29(45)38-20)41-31(34)35/h8-10,17,20,23-25H,2-7,11-16,18-19,32-33H2,1H3,(H,36,44)(H,37,43)(H,38,45)(H,39,42)(H,40,46)(H4,34,35,41)/t20-,23+,24+,25-/m1/s1
DV0 InChIKey InChI 1.03 WUGZEUIQIOXIIV-AKAGGGOCSA-N
DV0 SMILES_CANONICAL CACTVS 3.385 C[C@H]1NC(=O)[C@@H](CCCCNC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)Cc2cccc(CNC1=O)c2)NC(N)=N
DV0 SMILES CACTVS 3.385 C[CH]1NC(=O)[CH](CCCCNC(=O)[CH](CCCCN)NC(=O)[CH](CCCCN)NC(=O)Cc2cccc(CNC1=O)c2)NC(N)=N
DV0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\N[C@@H]1CCCCNC(=O)[C@@H](NC(=O)[C@@H](NC(=O)Cc2cccc(c2)CNC(=O)[C@H](NC1=O)C)CCCCN)CCCCN"
DV0 SMILES "OpenEye OEToolkits" 2.0.7 CC1C(=O)NCc2cccc(c2)CC(=O)NC(C(=O)NC(C(=O)NCCCCC(C(=O)N1)NC(=N)N)CCCCN)CCCCN
#
_pdbx_chem_comp_identifier.comp_id DV0
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
1-[(5~{R},8~{R},15~{S},18~{S})-15,18-bis(4-azanylbutyl)-5-methyl-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DV0 'Create component' 2019-09-03 PDBJ
DV0 'Initial release' 2020-06-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DV0 C10 C -0.348 -5.140 1
DV0 C15 C -0.171 -3.466 2
DV0 C17 C -2.738 -1.843 3
DV0 C20 C -2.403 2.474 4
DV0 C22 C -3.508 3.200 5
DV0 C24 C -4.621 1.077 6
DV0 C26 C -5.644 -1.219 7
DV0 C01 C 4.816 -0.792 8
DV0 C02 C 3.547 -1.589 9
DV0 C03 C 3.598 -3.083 10
DV0 C05 C 4.944 -5.287 11
DV0 C06 C 3.644 -6.053 12
DV0 C07 C 3.658 -7.559 13
DV0 C09 C 0.975 -5.985 14
DV0 C12 C -2.935 -5.349 15
DV0 C16 C -1.168 -2.083 16
DV0 C18 C -3.276 -0.265 17
DV0 C23 C -4.731 2.536 18
DV0 C25 C -5.801 0.249 19
DV0 C29 C -1.904 5.623 20
DV0 C31 C -0.429 4.948 21
DV0 C32 C 0.790 5.810 22
DV0 C33 C 0.671 7.300 23
DV0 C34 C 1.914 8.132 24
DV0 C35 C 1.826 9.623 25
DV0 C38 C 0.971 2.847 26
DV0 C40 C 0.938 1.330 27
DV0 C41 C 2.166 0.611 28
DV0 C42 C 2.219 -0.889 29
DV0 C43 C 3.435 1.407 30
DV0 C44 C 4.763 0.708 31
DV0 N04 N 4.917 -3.793 32
DV0 N08 N 2.321 -5.281 33
DV0 N11 N -1.644 -5.941 34
DV0 N13 N -3.049 -3.900 35
DV0 N14 N -4.164 -6.229 36
DV0 N19 N -2.209 0.873 37
DV0 N27 N -6.854 -2.078 38
DV0 N28 N -3.357 4.780 39
DV0 N36 N 3.082 10.440 40
DV0 N37 N -0.280 3.493 41
DV0 O21 O -1.428 3.144 42
DV0 O30 O -1.971 7.126 43
DV0 O39 O 2.256 3.613 44
DV0 O45 O 0.921 -7.503 45
DV0 O46 O 6.260 -6.015 46
DV0 H43 H -4.383 -3.275 47
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DV0 N36 C35 SINGLE NONE 1
DV0 C35 C34 SINGLE NONE 2
DV0 C26 N27 SINGLE NONE 3
DV0 C26 C25 SINGLE NONE 4
DV0 C43 C44 DOUBLE NONE 5
DV0 C43 C41 SINGLE NONE 6
DV0 C34 C33 SINGLE NONE 7
DV0 C40 C41 SINGLE NONE 8
DV0 C40 C38 SINGLE NONE 9
DV0 C44 C01 SINGLE NONE 10
DV0 C41 C42 DOUBLE NONE 11
DV0 C24 C25 SINGLE NONE 12
DV0 C24 C23 SINGLE NONE 13
DV0 C01 C02 DOUBLE NONE 14
DV0 C42 C02 SINGLE NONE 15
DV0 C33 C32 SINGLE NONE 16
DV0 C02 C03 SINGLE NONE 17
DV0 N37 C38 SINGLE NONE 18
DV0 N37 C31 SINGLE NONE 19
DV0 C03 N04 SINGLE NONE 20
DV0 C31 C32 SINGLE BEGINDASH 21
DV0 C38 O39 DOUBLE NONE 22
DV0 C22 C23 SINGLE BEGINDASH 23
DV0 O46 C05 DOUBLE NONE 24
DV0 C31 C29 SINGLE NONE 25
DV0 N28 C29 SINGLE NONE 26
DV0 N28 C22 SINGLE NONE 27
DV0 N04 C05 SINGLE NONE 28
DV0 C05 C06 SINGLE NONE 29
DV0 C29 O30 DOUBLE NONE 30
DV0 C22 C20 SINGLE NONE 31
DV0 O45 C09 DOUBLE NONE 32
DV0 O21 C20 DOUBLE NONE 33
DV0 C20 N19 SINGLE NONE 34
DV0 N13 C12 DOUBLE NONE 35
DV0 C06 N08 SINGLE NONE 36
DV0 C06 C07 SINGLE BEGINWEDGE 37
DV0 C09 N08 SINGLE NONE 38
DV0 C09 C10 SINGLE NONE 39
DV0 N19 C18 SINGLE NONE 40
DV0 C10 N11 SINGLE BEGINDASH 41
DV0 C10 C15 SINGLE NONE 42
DV0 C12 N11 SINGLE ENDUPRIGHT 43
DV0 C12 N14 SINGLE ENDDOWNRIGHT 44
DV0 C16 C15 SINGLE NONE 45
DV0 C16 C17 SINGLE NONE 46
DV0 C18 C17 SINGLE NONE 47
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DV0 MurckoScaffold S1 scaffold O=C1CCCCCNC(=O)CNC(=O)CNC(=O)Cc2cccc(c2)CNC(=O)CN1 InChI=1S/C21H29N5O5/c27-17-7-2-1-3-8-22-19(29)12-26-21(31)14-25-18(28)10-15-5-4-6-16(9-15)11-23-20(30)13-24-17/h4-6,9H,1-3,7-8,10-14H2,(H,22,29)(H,23,30)(H,24,27)(H,25,28)(H,26,31) JDGBBDUDHBFTNQ-UHFFFAOYSA-N
DV0 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
DV0 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
DV0 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DV0 C10 S1 1
DV0 C15 S1 1
DV0 C17 S1 1
DV0 C20 S1 1
DV0 C22 S1 1
DV0 C01 S1 1
DV0 C02 S1 1
DV0 C03 S1 1
DV0 C05 S1 1
DV0 C06 S1 1
DV0 C09 S1 1
DV0 C16 S1 1
DV0 C18 S1 1
DV0 C29 S1 1
DV0 C31 S1 1
DV0 C38 S1 1
DV0 C40 S1 1
DV0 C41 S1 1
DV0 C42 S1 1
DV0 C43 S1 1
DV0 C44 S1 1
DV0 N04 S1 1
DV0 N08 S1 1
DV0 N19 S1 1
DV0 N28 S1 1
DV0 N37 S1 1
DV0 O21 S1 1
DV0 O30 S1 1
DV0 O39 S1 1
DV0 O45 S1 1
DV0 O46 S1 1
DV0 N04 F1 1
DV0 C05 F1 1
DV0 O46 F1 1
DV0 C06 F1 1
DV0 N08 F1 2
DV0 C09 F1 2
DV0 O45 F1 2
DV0 C10 F1 2
DV0 N19 F1 3
DV0 C20 F1 3
DV0 O21 F1 3
DV0 C22 F1 3
DV0 N28 F1 4
DV0 C29 F1 4
DV0 O30 F1 4
DV0 C31 F1 4
DV0 N37 F1 5
DV0 C38 F1 5
DV0 O39 F1 5
DV0 C40 F1 5
DV0 O21 F2 1
DV0 C20 F2 1
DV0 C22 F2 1
DV0 N28 F2 1
DV0 O30 F2 2
DV0 C29 F2 2
DV0 C31 F2 2
DV0 N37 F2 2
DV0 O45 F2 3
DV0 C09 F2 3
DV0 C10 F2 3
DV0 N11 F2 3
DV0 O46 F2 4
DV0 C05 F2 4
DV0 C06 F2 4
DV0 N08 F2 4
DV0 C01 F3 1
DV0 C44 F3 1
DV0 C43 F3 1
DV0 C41 F3 1
DV0 C42 F3 1
DV0 C02 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DV0
_pdbe_chem_comp_rdkit_properties.exactmw 644.412
_pdbe_chem_comp_rdkit_properties.amw 644.822
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 13
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 10
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 46
_pdbe_chem_comp_rdkit_properties.NumAtoms 98
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 5
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.613
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 344.174
_pdbe_chem_comp_rdkit_properties.tpsa 259.440
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.380
_pdbe_chem_comp_rdkit_properties.CrippenMR 174.436
_pdbe_chem_comp_rdkit_properties.chi0v 22.013
_pdbe_chem_comp_rdkit_properties.chi1v 11.098
_pdbe_chem_comp_rdkit_properties.chi2v 3.844
_pdbe_chem_comp_rdkit_properties.chi3v 3.844
_pdbe_chem_comp_rdkit_properties.chi4v 2.190
_pdbe_chem_comp_rdkit_properties.chi0n 74.013
_pdbe_chem_comp_rdkit_properties.chi1n 36.412
_pdbe_chem_comp_rdkit_properties.chi2n 3.844
_pdbe_chem_comp_rdkit_properties.chi3n 3.844
_pdbe_chem_comp_rdkit_properties.chi4n 2.190
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.240
_pdbe_chem_comp_rdkit_properties.kappa1 7.726
_pdbe_chem_comp_rdkit_properties.kappa2 20.724
_pdbe_chem_comp_rdkit_properties.kappa3 14.243
_pdbe_chem_comp_rdkit_properties.Phi 3.481
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DV0 UniChem PDBe DV0
DV0 UniChem PubChem 146170535
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DV0 C10 4.013 1.206 0.359 ETKDGv3 1
DV0 C15 2.565 1.437 0.837 ETKDGv3 2
DV0 C17 1.637 2.377 -1.357 ETKDGv3 3
DV0 C20 -1.904 3.673 -2.040 ETKDGv3 4
DV0 C22 -3.293 3.225 -1.648 ETKDGv3 5
DV0 C24 -2.900 3.922 0.813 ETKDGv3 6
DV0 C26 -4.763 3.902 2.622 ETKDGv3 7
DV0 C01 0.916 -6.251 0.493 ETKDGv3 8
DV0 C02 1.820 -5.489 -0.148 ETKDGv3 9
DV0 C03 3.290 -5.805 -0.076 ETKDGv3 10
DV0 C05 4.711 -3.698 0.000 ETKDGv3 11
DV0 C06 5.189 -2.500 0.781 ETKDGv3 12
DV0 C07 6.716 -2.402 0.722 ETKDGv3 13
DV0 C09 4.559 -0.046 0.992 ETKDGv3 14
DV0 C12 6.152 2.559 0.086 ETKDGv3 15
DV0 C16 1.868 2.622 0.145 ETKDGv3 16
DV0 C18 0.607 3.348 -1.950 ETKDGv3 17
DV0 C23 -3.818 4.010 -0.425 ETKDGv3 18
DV0 C25 -3.507 4.595 2.056 ETKDGv3 19
DV0 C29 -2.997 0.823 -2.426 ETKDGv3 20
DV0 C31 -2.599 -0.597 -2.083 ETKDGv3 21
DV0 C32 -3.817 -1.543 -1.931 ETKDGv3 22
DV0 C33 -4.898 -1.132 -0.911 ETKDGv3 23
DV0 C34 -4.467 -1.334 0.549 ETKDGv3 24
DV0 C35 -5.644 -1.100 1.507 ETKDGv3 25
DV0 C38 -0.691 -1.636 -0.695 ETKDGv3 26
DV0 C40 -0.413 -2.747 -1.679 ETKDGv3 27
DV0 C41 0.055 -3.991 -0.970 ETKDGv3 28
DV0 C42 1.362 -4.301 -0.911 ETKDGv3 29
DV0 C43 -0.929 -4.842 -0.261 ETKDGv3 30
DV0 C44 -0.521 -5.912 0.430 ETKDGv3 31
DV0 N04 3.988 -4.751 0.657 ETKDGv3 32
DV0 N08 4.583 -1.275 0.251 ETKDGv3 33
DV0 N11 4.871 2.348 0.697 ETKDGv3 34
DV0 N13 6.591 1.737 -0.815 ETKDGv3 35
DV0 N14 6.947 3.681 0.478 ETKDGv3 36
DV0 N19 -0.746 3.021 -1.499 ETKDGv3 37
DV0 N27 -4.531 2.498 2.964 ETKDGv3 38
DV0 N28 -3.330 1.777 -1.404 ETKDGv3 39
DV0 N36 -5.237 -1.264 2.900 ETKDGv3 40
DV0 N37 -1.710 -0.645 -0.913 ETKDGv3 41
DV0 O21 -1.770 4.648 -2.828 ETKDGv3 42
DV0 O30 -3.035 1.170 -3.638 ETKDGv3 43
DV0 O39 0.047 -1.525 0.322 ETKDGv3 44
DV0 O45 4.956 -0.019 2.190 ETKDGv3 45
DV0 O46 4.945 -3.765 -1.238 ETKDGv3 46
DV0 H1 4.006 1.073 -0.744 ETKDGv3 47
DV0 H2 2.567 1.620 1.934 ETKDGv3 48
DV0 H3 1.965 0.517 0.662 ETKDGv3 49
DV0 H4 1.294 1.333 -1.535 ETKDGv3 50
DV0 H5 2.597 2.517 -1.899 ETKDGv3 51
DV0 H6 -3.981 3.446 -2.494 ETKDGv3 52
DV0 H7 -1.948 4.446 0.585 ETKDGv3 53
DV0 H8 -2.635 2.871 1.046 ETKDGv3 54
DV0 H9 -5.611 3.979 1.910 ETKDGv3 55
DV0 H10 -5.073 4.440 3.543 ETKDGv3 56
DV0 H11 1.223 -7.116 1.067 ETKDGv3 57
DV0 H12 3.691 -5.910 -1.107 ETKDGv3 58
DV0 H13 3.468 -6.776 0.436 ETKDGv3 59
DV0 H14 4.887 -2.622 1.844 ETKDGv3 60
DV0 H15 7.071 -1.560 1.352 ETKDGv3 61
DV0 H16 7.056 -2.230 -0.322 ETKDGv3 62
DV0 H17 7.175 -3.339 1.103 ETKDGv3 63
DV0 H18 0.893 2.776 0.656 ETKDGv3 64
DV0 H19 2.458 3.552 0.284 ETKDGv3 65
DV0 H20 0.646 3.268 -3.058 ETKDGv3 66
DV0 H21 0.855 4.393 -1.665 ETKDGv3 67
DV0 H22 -4.826 3.615 -0.182 ETKDGv3 68
DV0 H23 -3.940 5.079 -0.706 ETKDGv3 69
DV0 H24 -3.760 5.650 1.813 ETKDGv3 70
DV0 H25 -2.731 4.624 2.852 ETKDGv3 71
DV0 H26 -2.020 -0.958 -2.961 ETKDGv3 72
DV0 H27 -3.471 -2.569 -1.687 ETKDGv3 73
DV0 H28 -4.309 -1.614 -2.926 ETKDGv3 74
DV0 H29 -5.785 -1.776 -1.100 ETKDGv3 75
DV0 H30 -5.230 -0.088 -1.083 ETKDGv3 76
DV0 H31 -4.084 -2.369 0.686 ETKDGv3 77
DV0 H32 -3.661 -0.622 0.810 ETKDGv3 78
DV0 H33 -6.044 -0.072 1.366 ETKDGv3 79
DV0 H34 -6.461 -1.820 1.283 ETKDGv3 80
DV0 H35 -1.317 -3.012 -2.259 ETKDGv3 81
DV0 H36 0.348 -2.394 -2.408 ETKDGv3 82
DV0 H37 2.094 -3.675 -1.406 ETKDGv3 83
DV0 H38 -1.983 -4.595 -0.294 ETKDGv3 84
DV0 H39 -1.241 -6.530 0.950 ETKDGv3 85
DV0 H40 3.839 -4.698 1.690 ETKDGv3 86
DV0 H41 4.174 -1.279 -0.712 ETKDGv3 87
DV0 H42 4.569 3.012 1.446 ETKDGv3 88
DV0 H43 7.520 1.868 -1.274 ETKDGv3 89
DV0 H44 6.600 4.347 1.203 ETKDGv3 90
DV0 H45 7.883 3.852 0.048 ETKDGv3 91
DV0 H46 -0.883 2.263 -0.796 ETKDGv3 92
DV0 H47 -4.470 1.937 2.085 ETKDGv3 93
DV0 H48 -3.624 2.408 3.477 ETKDGv3 94
DV0 H50 -3.585 1.427 -0.456 ETKDGv3 95
DV0 H51 -4.854 -2.229 3.028 ETKDGv3 96
DV0 H52 -4.468 -0.587 3.111 ETKDGv3 97
DV0 H54 -1.754 0.119 -0.204 ETKDGv3 98
#