data_DVS
#
_chem_comp.id DVS
_chem_comp.name "5'-S-[3-(N'-benzylcarbamimidamido)propyl]-5'-thioadenosine"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H28 N8 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-04-26
_chem_comp.pdbx_modified_date 2023-05-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 472.564
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DVS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8G2F
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DVS N1 N1 N 0 1 Y N N N N N 27.172 1.098 -3.994 -8.738 2.457 0.404 N1 DVS 1
DVS C7 C1 C 0 1 N N S N N N 20.682 -0.773 -0.682 -3.872 -2.890 -0.218 C7 DVS 2
DVS C8 C2 C 0 1 N N S N N N 20.893 -1.903 -1.713 -2.759 -2.086 0.483 C8 DVS 3
DVS N2 N2 N 0 1 Y N N N N N 23.338 0.372 -3.007 -5.178 0.553 0.100 N2 DVS 4
DVS C9 C3 C 0 1 N N N N N N 19.662 -2.210 -2.545 -1.462 -2.182 -0.323 C9 DVS 5
DVS O1 O1 O 0 1 N N N N N N 21.011 -1.221 0.631 -4.354 -3.928 0.638 O1 DVS 6
DVS C1 C4 C 0 1 Y N N N N N 24.839 1.283 -4.340 -6.498 2.293 -0.287 C1 DVS 7
DVS C5 C5 C 0 1 N N R N N N 22.658 -0.409 -1.975 -4.645 -0.738 0.541 C5 DVS 8
DVS C6 C6 C 0 1 N N R N N N 21.605 0.359 -1.176 -4.985 -1.848 -0.486 C6 DVS 9
DVS N3 N3 N 0 1 Y N N N N N 23.599 1.636 -4.853 -5.277 2.530 -0.821 N3 DVS 10
DVS C4 C7 C 0 1 Y N N N N N 22.749 1.077 -4.025 -4.500 1.510 -0.595 C4 DVS 11
DVS C3 C8 C 0 1 Y N N N N N 26.880 0.381 -2.901 -8.645 1.258 0.951 C3 DVS 12
DVS C2 C9 C 0 1 Y N N N N N 24.694 0.511 -3.195 -6.450 1.022 0.311 C2 DVS 13
DVS N4 N4 N 0 1 N N N N N N 16.288 -3.725 -5.816 4.920 -0.480 -0.196 N4 DVS 14
DVS O2 O2 O 0 1 N N N N N N 22.186 1.034 -0.065 -6.277 -2.403 -0.228 O2 DVS 15
DVS O O3 O 0 1 N N N N N N 21.962 -1.480 -2.596 -3.197 -0.719 0.549 O DVS 16
DVS N N5 N 0 1 Y N N N N N 25.679 0.027 -2.428 -7.536 0.549 0.912 N DVS 17
DVS C C10 C 0 1 Y N N N N N 26.156 1.568 -4.756 -7.704 3.011 -0.220 C DVS 18
DVS N7 N6 N 0 1 N N N N N N 26.458 2.224 -5.880 -7.812 4.267 -0.790 N7 DVS 19
DVS S S1 S 0 1 N N N N N N 19.056 -0.760 -3.441 -0.125 -1.358 0.584 S DVS 20
DVS C10 C11 C 0 1 N N N N N N 17.678 -1.469 -4.392 1.305 -1.574 -0.511 C10 DVS 21
DVS C11 C12 C 0 1 N N N N N N 18.153 -2.134 -5.668 2.536 -0.922 0.122 C11 DVS 22
DVS C12 C13 C 0 1 N N N N N N 17.022 -2.670 -6.501 3.741 -1.104 -0.802 C12 DVS 23
DVS C13 C14 C 0 1 N N N N N N 14.960 -3.717 -5.714 6.130 -0.517 -0.848 C13 DVS 24
DVS N6 N7 N 0 1 N N N N N N 14.261 -4.775 -5.478 6.228 -1.107 -2.007 N6 DVS 25
DVS N5 N8 N 0 1 N N N N N N 14.302 -2.521 -5.825 7.236 0.068 -0.279 N5 DVS 26
DVS C14 C15 C 0 1 N N N N N N 12.854 -2.403 -5.795 8.525 0.029 -0.974 C14 DVS 27
DVS C15 C16 C 0 1 Y N N N N N 12.283 -2.135 -4.422 9.565 0.736 -0.144 C15 DVS 28
DVS C20 C17 C 0 1 Y N N N N N 12.983 -2.471 -3.271 9.774 2.093 -0.307 C20 DVS 29
DVS C19 C18 C 0 1 Y N N N N N 12.400 -2.322 -2.016 10.728 2.742 0.454 C19 DVS 30
DVS C18 C19 C 0 1 Y N N N N N 11.127 -1.822 -1.898 11.473 2.034 1.379 C18 DVS 31
DVS C17 C20 C 0 1 Y N N N N N 10.422 -1.469 -3.035 11.264 0.677 1.542 C17 DVS 32
DVS C16 C21 C 0 1 Y N N N N N 10.995 -1.625 -4.287 10.306 0.029 0.784 C16 DVS 33
DVS H1 H1 H 0 1 N N N N N N 19.637 -0.433 -0.728 -3.507 -3.309 -1.156 H1 DVS 34
DVS H2 H2 H 0 1 N N N N N N 21.194 -2.814 -1.175 -2.600 -2.474 1.489 H2 DVS 35
DVS H3 H3 H 0 1 N N N N N N 18.866 -2.571 -1.878 -1.206 -3.230 -0.475 H3 DVS 36
DVS H4 H4 H 0 1 N N N N N N 19.914 -2.995 -3.273 -1.598 -1.697 -1.289 H4 DVS 37
DVS H5 H5 H 0 1 N N N N N N 20.875 -0.514 1.251 -5.075 -4.448 0.258 H5 DVS 38
DVS H6 H6 H 0 1 N N N N N N 23.404 -0.807 -1.272 -5.033 -0.995 1.527 H6 DVS 39
DVS H7 H7 H 0 1 N N N N N N 21.049 1.045 -1.832 -4.923 -1.467 -1.505 H7 DVS 40
DVS H8 H8 H 0 1 N N N N N N 21.678 1.164 -4.135 -3.470 1.433 -0.912 H8 DVS 41
DVS H9 H9 H 0 1 N N N N N N 27.728 0.043 -2.324 -9.509 0.845 1.448 H9 DVS 42
DVS H10 H10 H 0 1 N N N N N N 16.799 -4.482 -5.408 4.847 -0.041 0.666 H10 DVS 43
DVS H11 H11 H 0 1 N N N N N N 21.510 1.501 0.411 -6.535 -3.102 -0.845 H11 DVS 44
DVS H12 H12 H 0 1 N N N N N N 27.452 2.266 -5.986 -7.050 4.662 -1.243 H12 DVS 45
DVS H13 H13 H 0 1 N N N N N N 26.060 1.745 -6.662 -8.650 4.754 -0.738 H13 DVS 46
DVS H14 H14 H 0 1 N N N N N N 16.974 -0.664 -4.651 1.492 -2.637 -0.659 H14 DVS 47
DVS H15 H15 H 0 1 N N N N N N 17.166 -2.218 -3.770 1.099 -1.104 -1.473 H15 DVS 48
DVS H16 H16 H 0 1 N N N N N N 18.820 -2.968 -5.403 2.349 0.141 0.270 H16 DVS 49
DVS H17 H17 H 0 1 N N N N N N 18.709 -1.395 -6.264 2.741 -1.392 1.084 H17 DVS 50
DVS H18 H18 H 0 1 N N N N N N 17.433 -3.075 -7.438 3.536 -0.634 -1.764 H18 DVS 51
DVS H19 H19 H 0 1 N N N N N N 16.329 -1.847 -6.730 3.929 -2.168 -0.950 H19 DVS 52
DVS H20 H20 H 0 1 N N N N N N 14.834 -5.589 -5.383 5.447 -1.520 -2.408 H20 DVS 53
DVS H21 H21 H 0 1 N N N N N N 14.845 -1.688 -5.932 7.163 0.507 0.583 H21 DVS 54
DVS H22 H22 H 0 1 N N N N N N 12.561 -1.575 -6.458 8.824 -1.008 -1.126 H22 DVS 55
DVS H23 H23 H 0 1 N N N N N N 12.423 -3.343 -6.170 8.432 0.526 -1.940 H23 DVS 56
DVS H24 H24 H 0 1 N N N N N N 13.990 -2.852 -3.350 9.192 2.646 -1.030 H24 DVS 57
DVS H25 H25 H 0 1 N N N N N N 12.952 -2.601 -1.131 10.892 3.802 0.326 H25 DVS 58
DVS H26 H26 H 0 1 N N N N N N 10.678 -1.705 -0.923 12.219 2.540 1.973 H26 DVS 59
DVS H27 H27 H 0 1 N N N N N N 9.422 -1.071 -2.946 11.846 0.124 2.264 H27 DVS 60
DVS H28 H28 H 0 1 N N N N N N 10.436 -1.348 -5.168 10.140 -1.030 0.914 H28 DVS 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DVS C12 N4 SING N N 1
DVS C12 C11 SING N N 2
DVS N7 C SING N N 3
DVS N5 C14 SING N N 4
DVS N5 C13 SING N N 5
DVS N4 C13 SING N N 6
DVS C14 C15 SING N N 7
DVS C13 N6 DOUB N N 8
DVS C11 C10 SING N N 9
DVS N3 C1 SING Y N 10
DVS N3 C4 DOUB Y N 11
DVS C C1 DOUB Y N 12
DVS C N1 SING Y N 13
DVS C15 C16 DOUB Y N 14
DVS C15 C20 SING Y N 15
DVS C10 S SING N N 16
DVS C1 C2 SING Y N 17
DVS C16 C17 SING Y N 18
DVS C4 N2 SING Y N 19
DVS N1 C3 DOUB Y N 20
DVS S C9 SING N N 21
DVS C20 C19 DOUB Y N 22
DVS C2 N2 SING Y N 23
DVS C2 N DOUB Y N 24
DVS C17 C18 DOUB Y N 25
DVS N2 C5 SING N N 26
DVS C3 N SING Y N 27
DVS O C5 SING N N 28
DVS O C8 SING N N 29
DVS C9 C8 SING N N 30
DVS C19 C18 SING Y N 31
DVS C5 C6 SING N N 32
DVS C8 C7 SING N N 33
DVS C6 C7 SING N N 34
DVS C6 O2 SING N N 35
DVS C7 O1 SING N N 36
DVS C7 H1 SING N N 37
DVS C8 H2 SING N N 38
DVS C9 H3 SING N N 39
DVS C9 H4 SING N N 40
DVS O1 H5 SING N N 41
DVS C5 H6 SING N N 42
DVS C6 H7 SING N N 43
DVS C4 H8 SING N N 44
DVS C3 H9 SING N N 45
DVS N4 H10 SING N N 46
DVS O2 H11 SING N N 47
DVS N7 H12 SING N N 48
DVS N7 H13 SING N N 49
DVS C10 H14 SING N N 50
DVS C10 H15 SING N N 51
DVS C11 H16 SING N N 52
DVS C11 H17 SING N N 53
DVS C12 H18 SING N N 54
DVS C12 H19 SING N N 55
DVS N6 H20 SING N N 56
DVS N5 H21 SING N N 57
DVS C14 H22 SING N N 58
DVS C14 H23 SING N N 59
DVS C20 H24 SING N N 60
DVS C19 H25 SING N N 61
DVS C18 H26 SING N N 62
DVS C17 H27 SING N N 63
DVS C16 H28 SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DVS SMILES ACDLabs 12.01 N=C(NCc1ccccc1)NCCCSCC1OC(n2cnc3c(N)ncnc32)C(O)C1O
DVS InChI InChI 1.06 InChI=1S/C21H28N8O3S/c22-18-15-19(27-11-26-18)29(12-28-15)20-17(31)16(30)14(32-20)10-33-8-4-7-24-21(23)25-9-13-5-2-1-3-6-13/h1-3,5-6,11-12,14,16-17,20,30-31H,4,7-10H2,(H2,22,26,27)(H3,23,24,25)/t14-,16-,17-,20-/m1/s1
DVS InChIKey InChI 1.06 LTPOXWXTHQVJKG-WVSUBDOOSA-N
DVS SMILES_CANONICAL CACTVS 3.385 Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSCCCNC(=N)NCc4ccccc4)[C@@H](O)[C@H]3O
DVS SMILES CACTVS 3.385 Nc1ncnc2n(cnc12)[CH]3O[CH](CSCCCNC(=N)NCc4ccccc4)[CH](O)[CH]3O
DVS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/NCCCSC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)\NCc4ccccc4"
DVS SMILES "OpenEye OEToolkits" 2.0.7 c1ccc(cc1)CNC(=N)NCCCSCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DVS "SYSTEMATIC NAME" ACDLabs 12.01 "5'-S-[3-(N'-benzylcarbamimidamido)propyl]-5'-thioadenosine"
DVS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 1-[3-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]propyl]-3-(phenylmethyl)guanidine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DVS 'Create component' 2023-04-26 RCSB
DVS 'Initial release' 2023-05-10 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DVS N1 N 3.000 -5.579 1
DVS C7 C 7.487 0.231 2
DVS C8 C 8.913 -0.235 3
DVS N2 N 7.018 -3.622 4
DVS C9 C 10.129 0.645 5
DVS O1 O 7.027 1.659 6
DVS C1 C 5.598 -5.579 7
DVS C5 C 7.483 -2.196 8
DVS C6 C 6.604 -0.981 9
DVS N3 N 7.018 -6.036 10
DVS C4 C 7.893 -4.829 11
DVS C3 C 3.000 -4.079 12
DVS C2 C 5.598 -4.079 13
DVS N4 N 16.666 0.566 14
DVS O2 O 5.104 -0.978 15
DVS O O 8.911 -1.735 16
DVS N N 4.299 -3.329 17
DVS C C 4.299 -6.329 18
DVS N7 N 4.299 -7.829 19
DVS S S 11.498 0.032 20
DVS C10 C 12.713 0.912 21
DVS C11 C 14.082 0.299 22
DVS C12 C 15.297 1.179 23
DVS C13 C 17.881 1.446 24
DVS N6 N 19.251 0.834 25
DVS N5 N 17.727 2.938 26
DVS C14 C 18.942 3.818 27
DVS C15 C 18.788 5.310 28
DVS C20 C 17.419 5.922 29
DVS C19 C 17.265 7.414 30
DVS C18 C 18.480 8.294 31
DVS C17 C 19.849 7.681 32
DVS C16 C 20.003 6.189 33
DVS H20 H 20.466 1.713 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DVS C12 N4 SINGLE NONE 1
DVS C12 C11 SINGLE NONE 2
DVS N7 C SINGLE NONE 3
DVS N5 C14 SINGLE NONE 4
DVS N5 C13 SINGLE ENDUPRIGHT 5
DVS N4 C13 SINGLE ENDDOWNRIGHT 6
DVS C14 C15 SINGLE NONE 7
DVS C13 N6 DOUBLE NONE 8
DVS C11 C10 SINGLE NONE 9
DVS N3 C1 SINGLE NONE 10
DVS N3 C4 DOUBLE NONE 11
DVS C C1 SINGLE NONE 12
DVS C N1 DOUBLE NONE 13
DVS C15 C16 SINGLE NONE 14
DVS C15 C20 DOUBLE NONE 15
DVS C10 S SINGLE NONE 16
DVS C1 C2 DOUBLE NONE 17
DVS C16 C17 DOUBLE NONE 18
DVS C4 N2 SINGLE NONE 19
DVS N1 C3 SINGLE NONE 20
DVS S C9 SINGLE NONE 21
DVS C20 C19 SINGLE NONE 22
DVS C2 N2 SINGLE NONE 23
DVS C2 N SINGLE NONE 24
DVS C17 C18 SINGLE NONE 25
DVS C5 N2 SINGLE BEGINWEDGE 26
DVS C3 N DOUBLE NONE 27
DVS O C5 SINGLE NONE 28
DVS O C8 SINGLE NONE 29
DVS C8 C9 SINGLE BEGINWEDGE 30
DVS C19 C18 DOUBLE NONE 31
DVS C5 C6 SINGLE NONE 32
DVS C8 C7 SINGLE NONE 33
DVS C6 C7 SINGLE NONE 34
DVS C6 O2 SINGLE BEGINDASH 35
DVS C7 O1 SINGLE BEGINDASH 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DVS MurckoScaffold S1 scaffold 'N=C(NCCCSC[C@@H]1CC[C@H](n2cnc3cncnc32)O1)NCc1ccccc1' InChI=1S/C21H27N7OS/c22-21(25-11-16-5-2-1-3-6-16)24-9-4-10-30-13-17-7-8-19(29-17)28-15-27-18-12-23-14-26-20(18)28/h1-3,5-6,12,14-15,17,19H,4,7-11,13H2,(H3,22,24,25)/t17-,19+/m0/s1 INSNQUDLXJVHMI-PKOBYXMFSA-N
DVS adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
DVS imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
DVS phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
DVS purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
DVS pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DVS N1 S1 1
DVS C7 S1 1
DVS C8 S1 1
DVS N2 S1 1
DVS C9 S1 1
DVS C1 S1 1
DVS C5 S1 1
DVS C6 S1 1
DVS N3 S1 1
DVS C4 S1 1
DVS C3 S1 1
DVS C2 S1 1
DVS N4 S1 1
DVS O S1 1
DVS N S1 1
DVS C S1 1
DVS S S1 1
DVS C10 S1 1
DVS C11 S1 1
DVS C12 S1 1
DVS C13 S1 1
DVS N6 S1 1
DVS N5 S1 1
DVS C14 S1 1
DVS C15 S1 1
DVS C20 S1 1
DVS C19 S1 1
DVS C18 S1 1
DVS C17 S1 1
DVS C16 S1 1
DVS N1 F1 1
DVS C F1 1
DVS C1 F1 1
DVS C2 F1 1
DVS N F1 1
DVS C3 F1 1
DVS N2 F1 1
DVS C4 F1 1
DVS N3 F1 1
DVS N7 F1 1
DVS C1 F2 1
DVS C2 F2 1
DVS N2 F2 1
DVS C4 F2 1
DVS N3 F2 1
DVS C15 F3 1
DVS C16 F3 1
DVS C17 F3 1
DVS C18 F3 1
DVS C19 F3 1
DVS C20 F3 1
DVS N3 F4 1
DVS C4 F4 1
DVS N2 F4 1
DVS C2 F4 1
DVS C1 F4 1
DVS C F4 1
DVS N1 F4 1
DVS C3 F4 1
DVS N F4 1
DVS C1 F5 1
DVS C F5 1
DVS N1 F5 1
DVS C3 F5 1
DVS N F5 1
DVS C2 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DVS
_pdbe_chem_comp_rdkit_properties.exactmw 472.201
_pdbe_chem_comp_rdkit_properties.amw 472.575
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 61
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.429
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 234.645
_pdbe_chem_comp_rdkit_properties.tpsa 167.220
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.399
_pdbe_chem_comp_rdkit_properties.CrippenMR 123.316
_pdbe_chem_comp_rdkit_properties.chi0v 16.527
_pdbe_chem_comp_rdkit_properties.chi1v 9.145
_pdbe_chem_comp_rdkit_properties.chi2v 3.934
_pdbe_chem_comp_rdkit_properties.chi3v 3.934
_pdbe_chem_comp_rdkit_properties.chi4v 2.484
_pdbe_chem_comp_rdkit_properties.chi0n 43.711
_pdbe_chem_comp_rdkit_properties.chi1n 21.881
_pdbe_chem_comp_rdkit_properties.chi2n 3.443
_pdbe_chem_comp_rdkit_properties.chi3n 3.443
_pdbe_chem_comp_rdkit_properties.chi4n 2.109
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.930
_pdbe_chem_comp_rdkit_properties.kappa1 6.813
_pdbe_chem_comp_rdkit_properties.kappa2 10.792
_pdbe_chem_comp_rdkit_properties.kappa3 5.529
_pdbe_chem_comp_rdkit_properties.Phi 2.228
#
_pdbe_chem_comp_external_mappings.comp_id DVS
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id DVS
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DVS N1 -8.517 -0.587 -2.210 ETKDGv3 1
DVS C7 -2.846 1.252 2.023 ETKDGv3 2
DVS C8 -2.932 2.104 0.761 ETKDGv3 3
DVS N2 -5.579 0.054 0.618 ETKDGv3 4
DVS C9 -1.823 1.777 -0.246 ETKDGv3 5
DVS O1 -2.068 1.885 3.007 ETKDGv3 6
DVS C1 -6.598 -1.187 -0.935 ETKDGv3 7
DVS C5 -5.048 1.321 1.121 ETKDGv3 8
DVS C6 -4.291 1.118 2.438 ETKDGv3 9
DVS N3 -5.387 -1.866 -0.631 ETKDGv3 10
DVS C4 -4.817 -1.113 0.265 ETKDGv3 11
DVS C3 -8.602 0.631 -1.429 ETKDGv3 12
DVS C2 -6.697 -0.087 -0.240 ETKDGv3 13
DVS N4 3.291 0.412 0.384 ETKDGv3 14
DVS O2 -4.636 2.125 3.356 ETKDGv3 15
DVS O -4.185 1.881 0.155 ETKDGv3 16
DVS N -7.725 0.880 -0.491 ETKDGv3 17
DVS C -7.571 -1.464 -1.999 ETKDGv3 18
DVS N7 -7.491 -2.649 -2.789 ETKDGv3 19
DVS S -0.181 2.237 0.414 ETKDGv3 20
DVS C10 0.792 1.475 -0.936 ETKDGv3 21
DVS C11 1.084 -0.009 -0.668 ETKDGv3 22
DVS C12 1.990 -0.238 0.552 ETKDGv3 23
DVS C13 4.313 -0.015 -0.536 ETKDGv3 24
DVS N6 4.233 -1.154 -1.156 ETKDGv3 25
DVS N5 5.450 0.834 -0.754 ETKDGv3 26
DVS C14 6.565 0.468 -1.626 ETKDGv3 27
DVS C15 7.411 -0.594 -0.977 ETKDGv3 28
DVS C20 8.160 -0.304 0.102 ETKDGv3 29
DVS C19 8.974 -1.356 0.748 ETKDGv3 30
DVS C18 8.964 -2.604 0.264 ETKDGv3 31
DVS C17 8.140 -2.932 -0.917 ETKDGv3 32
DVS C16 7.403 -1.981 -1.506 ETKDGv3 33
DVS H1 -2.428 0.245 1.789 ETKDGv3 34
DVS H2 -2.869 3.184 1.028 ETKDGv3 35
DVS H3 -2.000 2.355 -1.178 ETKDGv3 36
DVS H4 -1.855 0.696 -0.499 ETKDGv3 37
DVS H5 -1.919 1.213 3.723 ETKDGv3 38
DVS H6 -5.897 2.021 1.283 ETKDGv3 39
DVS H7 -4.473 0.112 2.887 ETKDGv3 40
DVS H8 -3.846 -1.343 0.681 ETKDGv3 41
DVS H9 -9.388 1.345 -1.632 ETKDGv3 42
DVS H10 3.483 1.255 0.970 ETKDGv3 43
DVS H11 -5.513 1.865 3.744 ETKDGv3 44
DVS H12 -6.736 -3.351 -2.622 ETKDGv3 45
DVS H13 -8.189 -2.829 -3.544 ETKDGv3 46
DVS H14 0.252 1.577 -1.901 ETKDGv3 47
DVS H15 1.747 2.033 -1.041 ETKDGv3 48
DVS H16 0.131 -0.556 -0.513 ETKDGv3 49
DVS H17 1.562 -0.442 -1.572 ETKDGv3 50
DVS H18 2.127 -1.325 0.731 ETKDGv3 51
DVS H19 1.494 0.166 1.460 ETKDGv3 52
DVS H20 3.447 -1.828 -1.036 ETKDGv3 53
DVS H21 5.481 1.764 -0.279 ETKDGv3 54
DVS H22 6.178 0.128 -2.610 ETKDGv3 55
DVS H23 7.194 1.365 -1.816 ETKDGv3 56
DVS H24 8.174 0.699 0.510 ETKDGv3 57
DVS H25 9.576 -1.114 1.614 ETKDGv3 58
DVS H26 9.558 -3.375 0.737 ETKDGv3 59
DVS H27 8.132 -3.943 -1.304 ETKDGv3 60
DVS H28 6.801 -2.232 -2.371 ETKDGv3 61
#