data_DXE
#
_chem_comp.id DXE
_chem_comp.name 1,2-DIMETHOXYETHANE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C4 H10 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-06-06
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 90.121
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DXE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1PJX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DXE C4 C4 C 0 1 N N N N N N 8.161 7.856 -1.592 0.345 -0.091 2.743 C4 DXE 1
DXE O2 O2 O 0 1 N N N N N N 7.659 6.506 -1.777 0.403 0.319 1.375 O2 DXE 2
DXE C3 C3 C 0 1 N N N N N N 6.286 6.224 -2.042 -0.763 -0.203 0.737 C3 DXE 3
DXE C2 C2 C 0 1 N N N N N N 5.768 4.819 -1.661 -0.763 0.203 -0.737 C2 DXE 4
DXE O1 O1 O 0 1 N N N N N N 5.043 4.760 -0.387 0.403 -0.319 -1.375 O1 DXE 5
DXE C1 C1 C 0 1 N N N N N N 3.856 5.600 -0.599 0.345 0.091 -2.743 C1 DXE 6
DXE H41 1H4 H 0 1 N N N N N N 9.234 8.076 -1.384 0.331 -1.180 2.794 H41 DXE 7
DXE H42 2H4 H 0 1 N N N N N N 7.863 8.450 -2.487 1.220 0.285 3.273 H42 DXE 8
DXE H43 3H4 H 0 1 N N N N N N 7.558 8.329 -0.781 -0.558 0.305 3.204 H43 DXE 9
DXE H31 1H3 H 0 1 N N N N N N 5.647 6.998 -1.556 -1.653 0.195 1.224 H31 DXE 10
DXE H32 2H3 H 0 1 N N N N N N 6.068 6.420 -3.117 -0.763 -1.290 0.814 H32 DXE 11
DXE H21 1H2 H 0 1 N N N N N N 5.141 4.400 -2.483 -0.763 1.290 -0.814 H21 DXE 12
DXE H22 2H2 H 0 1 N N N N N N 6.605 4.083 -1.664 -1.653 -0.195 -1.224 H22 DXE 13
DXE H11 1H1 H 0 1 N N N N N N 3.305 5.555 0.369 1.220 -0.285 -3.273 H11 DXE 14
DXE H12 2H1 H 0 1 N N N N N N 4.086 6.635 -0.943 -0.558 -0.305 -3.204 H12 DXE 15
DXE H13 3H1 H 0 1 N N N N N N 3.244 5.307 -1.484 0.331 1.180 -2.794 H13 DXE 16
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DXE C4 O2 SING N N 1
DXE C4 H41 SING N N 2
DXE C4 H42 SING N N 3
DXE C4 H43 SING N N 4
DXE O2 C3 SING N N 5
DXE C3 C2 SING N N 6
DXE C3 H31 SING N N 7
DXE C3 H32 SING N N 8
DXE C2 O1 SING N N 9
DXE C2 H21 SING N N 10
DXE C2 H22 SING N N 11
DXE O1 C1 SING N N 12
DXE C1 H11 SING N N 13
DXE C1 H12 SING N N 14
DXE C1 H13 SING N N 15
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DXE SMILES ACDLabs 10.04 O(C)CCOC
DXE SMILES_CANONICAL CACTVS 3.341 COCCOC
DXE SMILES CACTVS 3.341 COCCOC
DXE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 COCCOC
DXE SMILES "OpenEye OEToolkits" 1.5.0 COCCOC
DXE InChI InChI 1.03 InChI=1S/C4H10O2/c1-5-3-4-6-2/h3-4H2,1-2H3
DXE InChIKey InChI 1.03 XTHFKEDIFFGKHM-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DXE "SYSTEMATIC NAME" ACDLabs 10.04 1,2-dimethoxyethane
DXE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 1,2-dimethoxyethane
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DXE 'Create component' 2003-06-06 RCSB
DXE 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id DXE
_pdbe_chem_comp_drugbank_details.drugbank_id DB01749
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 1,2-Dimethoxyethane
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 110-71-4
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DXE
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01749
_pdbe_chem_comp_drugbank_classification.parent 'Dialkyl ethers'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as dialkyl ethers. These are organic compounds containing the dialkyl ether functional group, with the formula ROR', where R and R' are alkyl groups."
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DXE C4 C 3.000 -0.375 1
DXE O2 O 4.299 0.375 2
DXE C3 C 5.598 -0.375 3
DXE C2 C 6.897 0.375 4
DXE O1 O 8.196 -0.375 5
DXE C1 C 9.495 0.375 6
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DXE C4 O2 SINGLE NONE 1
DXE O2 C3 SINGLE NONE 2
DXE C3 C2 SINGLE NONE 3
DXE C2 O1 SINGLE NONE 4
DXE O1 C1 SINGLE NONE 5
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id DXE
_pdbe_chem_comp_rdkit_properties.exactmw 90.068
_pdbe_chem_comp_rdkit_properties.amw 90.122
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtoms 16
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 52.111
_pdbe_chem_comp_rdkit_properties.tpsa 18.460
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.279
_pdbe_chem_comp_rdkit_properties.CrippenMR 23.752
_pdbe_chem_comp_rdkit_properties.chi0v 2.816
_pdbe_chem_comp_rdkit_properties.chi1v 1.066
_pdbe_chem_comp_rdkit_properties.chi2v 0.144
_pdbe_chem_comp_rdkit_properties.chi3v 0.144
_pdbe_chem_comp_rdkit_properties.chi4v 0.042
_pdbe_chem_comp_rdkit_properties.chi0n 12.816
_pdbe_chem_comp_rdkit_properties.chi1n 6.066
_pdbe_chem_comp_rdkit_properties.chi2n 0.144
_pdbe_chem_comp_rdkit_properties.chi3n 0.144
_pdbe_chem_comp_rdkit_properties.chi4n 0.042
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.080
_pdbe_chem_comp_rdkit_properties.kappa1 0.644
_pdbe_chem_comp_rdkit_properties.kappa2 4.920
_pdbe_chem_comp_rdkit_properties.kappa3 3.920
_pdbe_chem_comp_rdkit_properties.Phi 0.528
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DXE UniChem ChEMBL CHEMBL1232411
DXE UniChem DrugBank DB01749
DXE UniChem PDBe DXE
DXE UniChem ChEBI 42263
DXE UniChem ZINC ZINC000001690289
DXE UniChem eMolecules 492465
DXE UniChem fdasrs GXS24JF5IW
DXE UniChem HMDB HMDB0244080
DXE UniChem NMRShiftDB 10008639
DXE UniChem ACTor 110-71-4
DXE UniChem ACTor 24991-55-7
DXE UniChem Nikkaji J5.099G
DXE UniChem BRENDA 206551
DXE UniChem BRENDA 42850
DXE UniChem ChemicalBook CB9232185
DXE UniChem 'Probes And Drugs' PD008450
DXE UniChem 'EPA CompTox Dashboard' DTXSID0025286
DXE UniChem SureChEMBL SCHEMBL1154
DXE UniChem 'PubChem TPHARMA' 15119661
DXE UniChem PubChem 8071
DXE UniChem Mcule MCULE-7572196731
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DXE C4 2.489 -0.673 -0.597 ETKDGv3 1
DXE O2 1.745 -0.876 0.584 ETKDGv3 2
DXE C3 0.864 0.210 0.807 ETKDGv3 3
DXE C2 -0.536 -0.133 0.304 ETKDGv3 4
DXE O1 -1.412 0.929 0.619 ETKDGv3 5
DXE C1 -2.709 0.615 0.162 ETKDGv3 6
DXE H41 3.184 0.188 -0.481 ETKDGv3 7
DXE H42 1.826 -0.521 -1.477 ETKDGv3 8
DXE H43 3.102 -1.578 -0.789 ETKDGv3 9
DXE H31 1.210 1.170 0.354 ETKDGv3 10
DXE H32 0.809 0.383 1.903 ETKDGv3 11
DXE H21 -0.491 -0.290 -0.797 ETKDGv3 12
DXE H22 -0.865 -1.075 0.800 ETKDGv3 13
DXE H11 -3.386 1.456 0.415 ETKDGv3 14
DXE H12 -3.104 -0.297 0.662 ETKDGv3 15
DXE H13 -2.727 0.492 -0.944 ETKDGv3 16
#