data_E49
#
_chem_comp.id E49
_chem_comp.name 2-chloro-5-{[(4,6-dimethylpyrimidin-2-yl)sulfanyl]acetyl}benzenesulfonamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H14 Cl N3 O3 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-06-10
_chem_comp.pdbx_modified_date 2012-04-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 371.862
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code E49
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3S9T
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
E49 N1 N1 N 0 1 Y N N N N N -0.774 4.767 10.215 -5.569 -1.045 -0.000 N1 E49 1
E49 C2 C2 C 0 1 Y N N N N N -1.517 4.150 11.113 -4.359 -0.503 0.001 C2 E49 2
E49 N3 N3 N 0 1 Y N N N N N -1.889 4.728 12.258 -4.188 0.811 -0.015 N3 E49 3
E49 C4 C4 C 0 1 Y N N N N N -1.629 6.019 12.524 -5.227 1.628 -0.032 C4 E49 4
E49 C5 C5 C 0 1 Y N N N N N -0.895 6.704 11.570 -6.507 1.095 -0.034 C5 E49 5
E49 C6 C6 C 0 1 Y N N N N N -0.437 6.063 10.412 -6.650 -0.284 -0.018 C6 E49 6
E49 S7 S7 S 0 1 N N N N N N -1.931 2.501 10.707 -2.945 -1.555 0.025 S7 E49 7
E49 C8 C8 C 0 1 N N N N N N -3.080 1.964 12.054 -1.629 -0.312 0.018 C8 E49 8
E49 C9 C9 C 0 1 N N N N N N -4.228 2.963 12.223 -0.289 -1.001 0.036 C9 E49 9
E49 O10 O10 O 0 1 N N N N N N -4.678 3.607 11.212 -0.229 -2.212 0.052 O10 E49 10
E49 C11 C11 C 0 1 N N N N N N -2.170 6.731 13.796 -5.024 3.122 -0.050 C11 E49 11
E49 C12 C12 C 0 1 N N N N N N 0.406 6.742 9.444 -8.022 -0.908 -0.019 C12 E49 12
E49 C13 C13 C 0 1 Y N N N N N -4.844 3.121 13.586 0.947 -0.204 0.034 C13 E49 13
E49 C14 C14 C 0 1 Y N N N N N -5.059 2.085 14.456 2.194 -0.839 0.045 C14 E49 14
E49 C15 C15 C 0 1 Y N N N N N -5.636 2.276 15.637 3.348 -0.086 0.043 C15 E49 15
E49 C16 C16 C 0 1 Y N N N N N -6.197 3.492 15.925 3.276 1.298 0.030 C16 E49 16
E49 C17 C17 C 0 1 Y N N N N N -5.933 4.636 15.135 2.045 1.934 0.018 C17 E49 17
E49 C18 C18 C 0 1 Y N N N N N -5.428 4.359 13.957 0.883 1.194 0.015 C18 E49 18
E49 S19 S19 S 0 1 N N N N N N -5.954 0.835 16.689 4.918 -0.884 0.058 S19 E49 19
E49 O20 O20 O 0 1 N N N N N N -7.458 0.784 16.722 5.681 -0.251 1.077 O20 E49 20
E49 O22 O22 O 0 1 N N N N N N -5.356 1.046 17.954 4.659 -2.281 0.036 O22 E49 21
E49 N23 N23 N 0 1 N N N N N N -5.297 -0.506 16.058 5.665 -0.525 -1.376 N23 E49 22
E49 H5 H5 H 0 1 N N N N N N -0.672 7.750 11.722 -7.373 1.740 -0.048 H5 E49 23
E49 H8 H8 H 0 1 N N N N N N -3.497 0.979 11.797 -1.711 0.299 -0.881 H8 E49 24
E49 H8A H8A H 0 1 N N N N N N -2.519 1.899 12.998 -1.724 0.322 0.899 H8A E49 25
E49 H11 H11 H 0 1 N N N N N N -2.763 6.021 14.390 -4.967 3.468 -1.082 H11 E49 26
E49 H11A H11A H 0 0 N N N N N N -1.325 7.097 14.398 -5.860 3.608 0.452 H11A E49 27
E49 H11B H11B H 0 0 N N N N N N -2.804 7.580 13.499 -4.096 3.368 0.468 H11B E49 28
E49 H12 H12 H 0 1 N N N N N N 0.665 6.047 8.631 -8.360 -1.045 1.008 H12 E49 29
E49 H12A H12A H 0 0 N N N N N N -0.135 7.606 9.029 -8.717 -0.255 -0.546 H12A E49 30
E49 H12B H12B H 0 0 N N N N N N 1.326 7.088 9.938 -7.981 -1.875 -0.521 H12B E49 31
E49 H14 H14 H 0 1 N N N N N N -4.752 1.089 14.175 2.251 -1.918 0.056 H14 E49 32
E49 H17 H17 H 0 1 N N N N N N -6.129 5.643 15.471 1.997 3.013 0.008 H17 E49 33
E49 H18 H18 H 0 1 N N N N N N -5.459 5.137 13.208 -0.076 1.691 0.002 H18 E49 34
E49 HN23 HN23 H 0 0 N N N N N N -5.487 -1.284 16.657 6.632 -0.472 -1.419 HN23 E49 35
E49 HN2A HN2A H 0 0 N N N N N N -5.691 -0.677 15.155 5.134 -0.366 -2.173 HN2A E49 36
E49 CL21 CL21 CL 0 0 N N N N N N -7.307 4.065 17.179 4.735 2.239 0.027 CL21 E49 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
E49 N1 C6 DOUB Y N 1
E49 N1 C2 SING Y N 2
E49 C2 N3 DOUB Y N 3
E49 N3 C4 SING Y N 4
E49 C4 C11 SING N N 5
E49 C5 C4 DOUB Y N 6
E49 C6 C5 SING Y N 7
E49 S7 C2 SING N N 8
E49 S7 C8 SING N N 9
E49 C8 C9 SING N N 10
E49 C9 C13 SING N N 11
E49 O10 C9 DOUB N N 12
E49 C12 C6 SING N N 13
E49 C13 C18 DOUB Y N 14
E49 C13 C14 SING Y N 15
E49 C14 C15 DOUB Y N 16
E49 C15 C16 SING Y N 17
E49 C15 S19 SING N N 18
E49 C17 C16 DOUB Y N 19
E49 C18 C17 SING Y N 20
E49 S19 O20 DOUB N N 21
E49 S19 O22 DOUB N N 22
E49 N23 S19 SING N N 23
E49 C5 H5 SING N N 24
E49 C8 H8 SING N N 25
E49 C8 H8A SING N N 26
E49 C11 H11 SING N N 27
E49 C11 H11A SING N N 28
E49 C11 H11B SING N N 29
E49 C12 H12 SING N N 30
E49 C12 H12A SING N N 31
E49 C12 H12B SING N N 32
E49 C14 H14 SING N N 33
E49 C17 H17 SING N N 34
E49 C18 H18 SING N N 35
E49 N23 HN23 SING N N 36
E49 N23 HN2A SING N N 37
E49 C16 CL21 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
E49 SMILES ACDLabs 12.01 O=S(=O)(N)c2c(Cl)ccc(C(=O)CSc1nc(cc(n1)C)C)c2
E49 InChI InChI 1.03 InChI=1S/C14H14ClN3O3S2/c1-8-5-9(2)18-14(17-8)22-7-12(19)10-3-4-11(15)13(6-10)23(16,20)21/h3-6H,7H2,1-2H3,(H2,16,20,21)
E49 InChIKey InChI 1.03 GMUOUKSISIODEJ-UHFFFAOYSA-N
E49 SMILES_CANONICAL CACTVS 3.370 Cc1cc(C)nc(SCC(=O)c2ccc(Cl)c(c2)[S](N)(=O)=O)n1
E49 SMILES CACTVS 3.370 Cc1cc(C)nc(SCC(=O)c2ccc(Cl)c(c2)[S](N)(=O)=O)n1
E49 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 Cc1cc(nc(n1)SCC(=O)c2ccc(c(c2)S(=O)(=O)N)Cl)C
E49 SMILES "OpenEye OEToolkits" 1.7.2 Cc1cc(nc(n1)SCC(=O)c2ccc(c(c2)S(=O)(=O)N)Cl)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
E49 "SYSTEMATIC NAME" ACDLabs 12.01 2-chloro-5-{[(4,6-dimethylpyrimidin-2-yl)sulfanyl]acetyl}benzenesulfonamide
E49 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 2-chloranyl-5-[2-(4,6-dimethylpyrimidin-2-yl)sulfanylethanoyl]benzenesulfonamide
#
_pdbx_chem_comp_audit.comp_id E49
_pdbx_chem_comp_audit.action_type 'Create component'
_pdbx_chem_comp_audit.date 2011-06-10
_pdbx_chem_comp_audit.processing_site RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
E49 N1 N 10.794 -4.357 1
E49 C2 C 9.495 -3.607 2
E49 N3 N 8.196 -4.357 3
E49 C4 C 8.196 -5.857 4
E49 C5 C 9.495 -6.607 5
E49 C6 C 10.794 -5.857 6
E49 S7 S 9.495 -2.107 7
E49 C8 C 8.196 -1.357 8
E49 C9 C 8.196 0.142 9
E49 O10 O 9.495 0.892 10
E49 C11 C 6.897 -6.607 11
E49 C12 C 12.093 -6.607 12
E49 C13 C 6.897 0.892 13
E49 C14 C 6.897 2.393 14
E49 C15 C 5.598 3.143 15
E49 C16 C 4.299 2.393 16
E49 C17 C 4.299 0.892 17
E49 C18 C 5.598 0.142 18
E49 S19 S 5.598 4.643 19
E49 O20 O 7.098 4.643 20
E49 O22 O 4.098 4.643 21
E49 N23 N 5.598 6.143 22
E49 CL21 Cl 3.000 3.143 23
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
E49 N1 C6 DOUBLE NONE 1
E49 N1 C2 SINGLE NONE 2
E49 C2 N3 DOUBLE NONE 3
E49 N3 C4 SINGLE NONE 4
E49 C4 C11 SINGLE NONE 5
E49 C5 C4 DOUBLE NONE 6
E49 C6 C5 SINGLE NONE 7
E49 S7 C2 SINGLE NONE 8
E49 S7 C8 SINGLE NONE 9
E49 C8 C9 SINGLE NONE 10
E49 C9 C13 SINGLE NONE 11
E49 O10 C9 DOUBLE NONE 12
E49 C12 C6 SINGLE NONE 13
E49 C13 C18 SINGLE NONE 14
E49 C13 C14 DOUBLE NONE 15
E49 C14 C15 SINGLE NONE 16
E49 C15 C16 DOUBLE NONE 17
E49 C15 S19 SINGLE NONE 18
E49 C17 C16 SINGLE NONE 19
E49 C18 C17 DOUBLE NONE 20
E49 S19 O20 DOUBLE NONE 21
E49 S19 O22 DOUBLE NONE 22
E49 N23 S19 SINGLE NONE 23
E49 C16 CL21 SINGLE NONE 24
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
E49 MurckoScaffold S1 scaffold O=C(CSc1ncccn1)c1ccccc1 InChI=1S/C12H10N2OS/c15-11(10-5-2-1-3-6-10)9-16-12-13-7-4-8-14-12/h1-8H,9H2 GHFPOZONKDONET-UHFFFAOYSA-N
E49 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
E49 pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
E49 N1 S1 1
E49 C2 S1 1
E49 N3 S1 1
E49 C4 S1 1
E49 C5 S1 1
E49 C6 S1 1
E49 S7 S1 1
E49 C8 S1 1
E49 C9 S1 1
E49 O10 S1 1
E49 C13 S1 1
E49 C14 S1 1
E49 C15 S1 1
E49 C16 S1 1
E49 C17 S1 1
E49 C18 S1 1
E49 C13 F1 1
E49 C18 F1 1
E49 C17 F1 1
E49 C16 F1 1
E49 C15 F1 1
E49 C14 F1 1
E49 C5 F2 1
E49 C4 F2 1
E49 N3 F2 1
E49 C2 F2 1
E49 N1 F2 1
E49 C6 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id E49
_pdbe_chem_comp_rdkit_properties.exactmw 371.017
_pdbe_chem_comp_rdkit_properties.amw 371.871
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 23
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.214
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 162.862
_pdbe_chem_comp_rdkit_properties.tpsa 103.010
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.989
_pdbe_chem_comp_rdkit_properties.CrippenMR 89.728
_pdbe_chem_comp_rdkit_properties.chi0v 13.150
_pdbe_chem_comp_rdkit_properties.chi1v 8.050
_pdbe_chem_comp_rdkit_properties.chi2v 3.977
_pdbe_chem_comp_rdkit_properties.chi3v 3.977
_pdbe_chem_comp_rdkit_properties.chi4v 2.693
_pdbe_chem_comp_rdkit_properties.chi0n 24.761
_pdbe_chem_comp_rdkit_properties.chi1n 12.310
_pdbe_chem_comp_rdkit_properties.chi2n 2.107
_pdbe_chem_comp_rdkit_properties.chi3n 2.107
_pdbe_chem_comp_rdkit_properties.chi4n 1.238
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.480
_pdbe_chem_comp_rdkit_properties.kappa1 6.794
_pdbe_chem_comp_rdkit_properties.kappa2 6.959
_pdbe_chem_comp_rdkit_properties.kappa3 4.743
_pdbe_chem_comp_rdkit_properties.Phi 2.056
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
E49 UniChem ChEMBL CHEMBL2010997
E49 UniChem PDBe E49
E49 UniChem ZINC ZINC000084602494
E49 UniChem SureChEMBL SCHEMBL18425027
E49 UniChem 'PubChem TPHARMA' 140107817
E49 UniChem PubChem 59052998
E49 UniChem BindingDb 50380153
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
E49 N1 2.945 0.797 -0.529 ETKDGv3 1
E49 C2 1.825 1.403 -1.193 ETKDGv3 2
E49 N3 0.868 0.659 -1.668 ETKDGv3 3
E49 C4 0.899 -0.771 -1.526 ETKDGv3 4
E49 C5 1.936 -1.352 -0.907 ETKDGv3 5
E49 C6 3.012 -0.493 -0.371 ETKDGv3 6
E49 S7 1.724 3.185 -1.337 ETKDGv3 7
E49 C8 1.091 3.448 0.358 ETKDGv3 8
E49 C9 -0.333 2.977 0.482 ETKDGv3 9
E49 O10 -1.253 3.776 0.156 ETKDGv3 10
E49 C11 -0.214 -1.594 -2.092 ETKDGv3 11
E49 C12 4.192 -1.104 0.311 ETKDGv3 12
E49 C13 -0.683 1.587 0.881 ETKDGv3 13
E49 C14 -1.809 1.017 0.410 ETKDGv3 14
E49 C15 -2.143 -0.395 0.722 ETKDGv3 15
E49 C16 -1.313 -1.112 1.510 ETKDGv3 16
E49 C17 -0.093 -0.483 2.053 ETKDGv3 17
E49 C18 0.205 0.788 1.765 ETKDGv3 18
E49 S19 -3.624 -1.087 0.043 ETKDGv3 19
E49 O20 -4.162 -0.185 -1.032 ETKDGv3 20
E49 O22 -3.336 -2.430 -0.567 ETKDGv3 21
E49 N23 -4.818 -1.252 1.283 ETKDGv3 22
E49 H5 1.987 -2.428 -0.795 ETKDGv3 23
E49 H8 1.767 2.969 1.091 ETKDGv3 24
E49 H8A 1.126 4.539 0.567 ETKDGv3 25
E49 H11 -1.082 -0.946 -2.338 ETKDGv3 26
E49 H11A -0.543 -2.355 -1.353 ETKDGv3 27
E49 H11B 0.131 -2.103 -3.016 ETKDGv3 28
E49 H12 3.852 -1.865 1.044 ETKDGv3 29
E49 H12A 4.845 -1.590 -0.444 ETKDGv3 30
E49 H12B 4.778 -0.330 0.851 ETKDGv3 31
E49 H14 -2.468 1.577 -0.241 ETKDGv3 32
E49 H17 0.564 -1.054 2.698 ETKDGv3 33
E49 H18 1.092 1.218 2.205 ETKDGv3 34
E49 HN23 -4.914 -0.317 1.740 ETKDGv3 35
E49 HN2A -4.433 -1.901 2.003 ETKDGv3 36
E49 CL21 -1.620 -2.791 1.938 ETKDGv3 37
#