data_E5D
#
_chem_comp.id E5D
_chem_comp.name
(9R,11S)-3-ethyl-11-[(1R)-1-hydroxy-2-({[3-(propan-2-yl)phenyl]methyl}amino)ethyl]-9-methyl-3,12-diazabicyclo[12.3.1]octadeca-1(18),14,16-triene-2,13-dione
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H45 N3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-12-04
_chem_comp.pdbx_modified_date 2020-05-29
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 507.707
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code E5D
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5QCX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
E5D C1 C1 C 0 1 N N N N N N 29.990 7.349 21.549 -3.345 3.931 -1.383 C1 E5D 1
E5D C2 C2 C 0 1 N N N N N N 28.820 8.262 21.126 -3.299 2.402 -1.360 C2 E5D 2
E5D C4 C3 C 0 1 N N N N N N 28.792 8.986 18.753 -5.645 1.586 -1.963 C4 E5D 3
E5D C5 C4 C 0 1 N N N N N N 30.282 9.078 18.503 -5.650 0.069 -2.222 C5 E5D 4
E5D C6 C5 C 0 1 N N N N N N 30.604 10.122 17.442 -4.242 -0.489 -2.005 C6 E5D 5
E5D C8 C6 C 0 1 N N N N N N 32.503 8.662 16.545 -3.424 -2.618 -0.987 C8 E5D 6
E5D C10 C7 C 0 1 N N N N N N 31.443 8.811 14.258 -1.313 -2.077 -2.258 C10 E5D 7
E5D C11 C8 C 0 1 N N N N N N 32.346 6.595 15.076 -1.260 -3.753 -0.362 C11 E5D 8
E5D C12 C9 C 0 1 N N S N N N 31.330 5.632 14.492 -0.512 -2.792 0.548 C12 E5D 9
E5D N13 N1 N 0 1 N N N N N N 30.162 5.607 15.360 -1.206 -1.513 0.724 N13 E5D 10
E5D C18 C10 C 0 1 Y N N N N N 27.228 6.449 18.188 -3.785 1.618 1.309 C18 E5D 11
E5D C14 C11 C 0 1 N N N N N N 28.915 5.754 14.896 -0.956 -0.789 1.867 C14 E5D 12
E5D C16 C12 C 0 1 Y N N N N N 27.831 5.833 15.920 -1.826 0.404 2.046 C16 E5D 13
E5D C17 C13 C 0 1 Y N N N N N 28.191 6.274 17.195 -2.934 0.525 1.209 C17 E5D 14
E5D C19 C14 C 0 1 Y N N N N N 25.903 6.117 17.915 -3.530 2.591 2.275 C19 E5D 15
E5D C20 C15 C 0 1 Y N N N N N 25.536 5.694 16.648 -2.431 2.468 3.108 C20 E5D 16
E5D C21 C16 C 0 1 Y N N N N N 26.493 5.562 15.647 -1.579 1.381 3.003 C21 E5D 17
E5D C22 C17 C 0 1 N N N N N N 27.652 6.848 19.573 -4.924 1.706 0.367 C22 E5D 18
E5D C24 C18 C 0 1 N N R N N N 31.935 4.241 14.271 0.924 -2.572 0.055 C24 E5D 19
E5D C26 C19 C 0 1 N N N N N N 31.011 3.380 13.399 1.644 -1.602 0.994 C26 E5D 20
E5D C28 C20 C 0 1 N N N N N N 31.035 1.312 12.059 3.698 -0.367 1.335 C28 E5D 21
E5D C29 C21 C 0 1 Y N N N N N 30.962 2.052 10.732 5.058 -0.080 0.753 C29 E5D 22
E5D C30 C22 C 0 1 Y N N N N N 32.125 2.448 10.075 5.227 0.977 -0.121 C30 E5D 23
E5D C31 C23 C 0 1 Y N N N N N 32.086 3.125 8.862 6.474 1.241 -0.655 C31 E5D 24
E5D C32 C24 C 0 1 Y N N N N N 30.852 3.415 8.300 7.553 0.447 -0.315 C32 E5D 25
E5D C33 C25 C 0 1 Y N N N N N 29.682 3.037 8.940 7.385 -0.610 0.560 C33 E5D 26
E5D C34 C26 C 0 1 Y N N N N N 29.737 2.361 10.149 6.139 -0.871 1.098 C34 E5D 27
E5D C35 C27 C 0 1 N N N N N N 33.372 3.540 8.158 6.658 2.393 -1.609 C35 E5D 28
E5D C36 C28 C 0 1 N N N N N N 33.730 4.981 8.451 7.673 3.379 -1.028 C36 E5D 29
E5D C37 C29 C 0 1 N N N N N N 34.534 2.644 8.508 7.168 1.867 -2.952 C37 E5D 30
E5D C7 C30 C 0 1 N N N N N N 32.012 10.068 16.898 -4.233 -2.012 -2.137 C7 E5D 31
E5D C9 C31 C 0 1 N N R N N N 31.686 7.924 15.487 -2.079 -3.137 -1.478 C9 E5D 32
E5D N27 N2 N 0 1 N N N N N N 31.684 2.093 13.132 2.977 -1.298 0.457 N27 E5D 33
E5D N3 N3 N 0 1 N N N N N N 28.393 7.980 19.757 -4.612 1.878 -0.948 N3 E5D 34
E5D O15 O1 O 0 1 N N N N N N 28.673 5.856 13.696 -0.104 -1.104 2.675 O15 E5D 35
E5D O23 O2 O 0 1 N N N N N N 27.378 6.112 20.499 -6.086 1.627 0.756 O23 E5D 36
E5D O25 O3 O 0 1 N N N N N N 33.191 4.406 13.611 1.618 -3.821 0.038 O25 E5D 37
E5D H1 H1 H 0 1 N N N N N N 30.286 7.586 22.581 -3.588 4.303 -0.388 H1 E5D 38
E5D H2 H2 H 0 1 N N N N N N 29.674 6.297 21.491 -2.373 4.319 -1.688 H2 E5D 39
E5D H3 H3 H 0 1 N N N N N N 30.844 7.512 20.876 -4.106 4.262 -2.090 H3 E5D 40
E5D H4 H4 H 0 1 N N N N N N 29.143 9.311 21.191 -3.056 2.031 -2.356 H4 E5D 41
E5D H5 H5 H 0 1 N N N N N N 27.972 8.096 21.807 -2.538 2.072 -0.654 H5 E5D 42
E5D H6 H6 H 0 1 N N N N N N 28.441 9.970 19.097 -5.431 2.126 -2.890 H6 E5D 43
E5D H7 H7 H 0 1 N N N N N N 28.301 8.734 17.802 -6.625 1.897 -1.588 H7 E5D 44
E5D H8 H8 H 0 1 N N N N N N 30.649 8.098 18.164 -6.354 -0.421 -1.547 H8 E5D 45
E5D H9 H9 H 0 1 N N N N N N 30.786 9.354 19.441 -5.966 -0.121 -3.253 H9 E5D 46
E5D H10 H10 H 0 1 N N N N N N 30.447 11.117 17.884 -3.565 -0.063 -2.746 H10 E5D 47
E5D H11 H11 H 0 1 N N N N N N 29.908 9.980 16.602 -3.908 -0.229 -1.000 H11 E5D 48
E5D H12 H12 H 0 1 N N N N N N 32.490 8.058 17.464 -3.292 -1.875 -0.207 H12 E5D 49
E5D H13 H13 H 0 1 N N N N N N 33.536 8.747 16.177 -3.994 -3.453 -0.558 H13 E5D 50
E5D H14 H14 H 0 1 N N N N N N 30.972 9.754 14.573 -0.425 -2.525 -2.704 H14 E5D 51
E5D H15 H15 H 0 1 N N N N N N 32.403 9.027 13.767 -1.950 -1.672 -3.043 H15 E5D 52
E5D H16 H16 H 0 1 N N N N N N 30.780 8.287 13.553 -1.014 -1.275 -1.583 H16 E5D 53
E5D H17 H17 H 0 1 N N N N N N 32.807 6.135 15.962 -0.532 -4.450 -0.812 H17 E5D 54
E5D H18 H18 H 0 1 N N N N N N 33.121 6.798 14.323 -1.926 -4.381 0.255 H18 E5D 55
E5D H19 H19 H 0 1 N N N N N N 31.026 6.021 13.509 -0.435 -3.269 1.548 H19 E5D 56
E5D H20 H20 H 0 1 N N N N N N 30.296 5.475 16.342 -1.799 -1.148 0.054 H20 E5D 57
E5D H21 H21 H 0 1 N N N N N N 29.228 6.482 17.415 -3.149 -0.255 0.494 H21 E5D 58
E5D H22 H22 H 0 1 N N N N N N 25.159 6.190 18.694 -4.187 3.443 2.355 H22 E5D 59
E5D H23 H23 H 0 1 N N N N N N 24.502 5.466 16.436 -2.227 3.236 3.842 H23 E5D 60
E5D H24 H24 H 0 1 N N N N N N 26.198 5.249 14.657 -0.725 1.290 3.656 H24 E5D 61
E5D H25 H25 H 0 1 N N N N N N 32.072 3.749 15.245 0.903 -2.155 -0.952 H25 E5D 62
E5D H26 H26 H 0 1 N N N N N N 30.809 3.897 12.449 1.066 -0.681 1.076 H26 E5D 63
E5D H27 H27 H 0 1 N N N N N N 30.063 3.200 13.928 1.744 -2.057 1.979 H27 E5D 64
E5D H28 H28 H 0 1 N N N N N N 30.011 1.066 12.378 3.813 -0.814 2.323 H28 E5D 65
E5D H29 H29 H 0 1 N N N N N N 31.606 0.384 11.909 3.135 0.562 1.420 H29 E5D 66
E5D H30 H30 H 0 1 N N N N N N 33.083 2.223 10.520 4.383 1.597 -0.387 H30 E5D 67
E5D H31 H31 H 0 1 N N N N N N 30.802 3.939 7.357 8.528 0.652 -0.733 H31 E5D 68
E5D H32 H32 H 0 1 N N N N N N 28.725 3.270 8.496 8.228 -1.231 0.826 H32 E5D 69
E5D H33 H33 H 0 1 N N N N N N 28.821 2.072 10.643 6.008 -1.696 1.782 H33 E5D 70
E5D H34 H34 H 0 1 N N N N N N 33.199 3.454 7.075 5.703 2.898 -1.756 H34 E5D 71
E5D H35 H35 H 0 1 N N N N N N 32.880 5.630 8.194 7.805 4.213 -1.718 H35 E5D 72
E5D H36 H36 H 0 1 N N N N N N 33.965 5.090 9.520 7.309 3.754 -0.072 H36 E5D 73
E5D H37 H37 H 0 1 N N N N N N 34.606 5.270 7.852 8.627 2.874 -0.882 H37 E5D 74
E5D H38 H38 H 0 1 N N N N N N 34.269 1.598 8.293 6.445 1.164 -3.366 H38 E5D 75
E5D H39 H39 H 0 1 N N N N N N 35.411 2.930 7.909 7.301 2.700 -3.642 H39 E5D 76
E5D H40 H40 H 0 1 N N N N N N 34.770 2.750 9.577 8.123 1.361 -2.805 H40 E5D 77
E5D H41 H41 H 0 1 N N N N N N 32.689 10.488 17.656 -5.259 -2.386 -2.089 H41 E5D 78
E5D H42 H42 H 0 1 N N N N N N 32.052 10.685 15.988 -3.805 -2.294 -3.096 H42 E5D 79
E5D H43 H43 H 0 1 N N N N N N 30.706 7.687 15.926 -2.310 -3.956 -2.200 H43 E5D 80
E5D H44 H44 H 0 1 N N N N N N 31.676 1.549 13.971 2.914 -0.935 -0.482 H44 E5D 81
E5D H46 H46 H 0 1 N N N N N N 33.765 4.939 14.149 1.676 -4.251 0.902 H46 E5D 82
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
E5D C35 C36 SING N N 1
E5D C35 C37 SING N N 2
E5D C35 C31 SING N N 3
E5D C32 C31 DOUB Y N 4
E5D C32 C33 SING Y N 5
E5D C31 C30 SING Y N 6
E5D C33 C34 DOUB Y N 7
E5D C30 C29 DOUB Y N 8
E5D C34 C29 SING Y N 9
E5D C29 C28 SING N N 10
E5D C28 N27 SING N N 11
E5D N27 C26 SING N N 12
E5D C26 C24 SING N N 13
E5D O25 C24 SING N N 14
E5D O15 C14 DOUB N N 15
E5D C10 C9 SING N N 16
E5D C24 C12 SING N N 17
E5D C12 C11 SING N N 18
E5D C12 N13 SING N N 19
E5D C14 N13 SING N N 20
E5D C14 C16 SING N N 21
E5D C11 C9 SING N N 22
E5D C9 C8 SING N N 23
E5D C21 C16 DOUB Y N 24
E5D C21 C20 SING Y N 25
E5D C16 C17 SING Y N 26
E5D C8 C7 SING N N 27
E5D C20 C19 DOUB Y N 28
E5D C7 C6 SING N N 29
E5D C17 C18 DOUB Y N 30
E5D C6 C5 SING N N 31
E5D C19 C18 SING Y N 32
E5D C18 C22 SING N N 33
E5D C5 C4 SING N N 34
E5D C4 N3 SING N N 35
E5D C22 N3 SING N N 36
E5D C22 O23 DOUB N N 37
E5D N3 C2 SING N N 38
E5D C2 C1 SING N N 39
E5D C1 H1 SING N N 40
E5D C1 H2 SING N N 41
E5D C1 H3 SING N N 42
E5D C2 H4 SING N N 43
E5D C2 H5 SING N N 44
E5D C4 H6 SING N N 45
E5D C4 H7 SING N N 46
E5D C5 H8 SING N N 47
E5D C5 H9 SING N N 48
E5D C6 H10 SING N N 49
E5D C6 H11 SING N N 50
E5D C8 H12 SING N N 51
E5D C8 H13 SING N N 52
E5D C10 H14 SING N N 53
E5D C10 H15 SING N N 54
E5D C10 H16 SING N N 55
E5D C11 H17 SING N N 56
E5D C11 H18 SING N N 57
E5D C12 H19 SING N N 58
E5D N13 H20 SING N N 59
E5D C17 H21 SING N N 60
E5D C19 H22 SING N N 61
E5D C20 H23 SING N N 62
E5D C21 H24 SING N N 63
E5D C24 H25 SING N N 64
E5D C26 H26 SING N N 65
E5D C26 H27 SING N N 66
E5D C28 H28 SING N N 67
E5D C28 H29 SING N N 68
E5D C30 H30 SING N N 69
E5D C32 H31 SING N N 70
E5D C33 H32 SING N N 71
E5D C34 H33 SING N N 72
E5D C35 H34 SING N N 73
E5D C36 H35 SING N N 74
E5D C36 H36 SING N N 75
E5D C36 H37 SING N N 76
E5D C37 H38 SING N N 77
E5D C37 H39 SING N N 78
E5D C37 H40 SING N N 79
E5D C7 H41 SING N N 80
E5D C7 H42 SING N N 81
E5D C9 H43 SING N N 82
E5D N27 H44 SING N N 83
E5D O25 H46 SING N N 84
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
E5D SMILES ACDLabs 12.01 CCN1CCCCCC(C)CC(NC(c2cc(C1=O)ccc2)=O)C(CNCc3cc(ccc3)C(C)C)O
E5D InChI InChI 1.03 InChI=1S/C31H45N3O3/c1-5-34-16-8-6-7-11-23(4)17-28(33-30(36)26-14-10-15-27(19-26)31(34)37)29(35)21-32-20-24-12-9-13-25(18-24)22(2)3/h9-10,12-15,18-19,22-23,28-29,32,35H,5-8,11,16-17,20-21H2,1-4H3,(H,33,36)/t23-,28+,29-/m1/s1
E5D InChIKey InChI 1.03 MYMHIVTZLXPTIU-LDVROUIZSA-N
E5D SMILES_CANONICAL CACTVS 3.385 CCN1CCCCC[C@@H](C)C[C@H](NC(=O)c2cccc(c2)C1=O)[C@H](O)CNCc3cccc(c3)C(C)C
E5D SMILES CACTVS 3.385 CCN1CCCCC[CH](C)C[CH](NC(=O)c2cccc(c2)C1=O)[CH](O)CNCc3cccc(c3)C(C)C
E5D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CCN1CCCCC[C@H](C[C@H](NC(=O)c2cccc(c2)C1=O)[C@@H](CNCc3cccc(c3)C(C)C)O)C
E5D SMILES "OpenEye OEToolkits" 2.0.6 CCN1CCCCCC(CC(NC(=O)c2cccc(c2)C1=O)C(CNCc3cccc(c3)C(C)C)O)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
E5D "SYSTEMATIC NAME" ACDLabs 12.01 (9R,11S)-3-ethyl-11-[(1R)-1-hydroxy-2-({[3-(propan-2-yl)phenyl]methyl}amino)ethyl]-9-methyl-3,12-diazabicyclo[12.3.1]octadeca-1(18),14,16-triene-2,13-dione
E5D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 (9~{R},11~{S})-3-ethyl-9-methyl-11-[(1~{R})-1-oxidanyl-2-[(3-propan-2-ylphenyl)methylamino]ethyl]-3,12-diazabicyclo[12.3.1]octadeca-1(18),14,16-triene-2,13-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
E5D 'Create component' 2017-12-04 RCSB
E5D 'Initial release' 2020-06-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
E5D C1 C 10.919 -3.857 1
E5D C2 C 9.729 -4.770 2
E5D C4 C 11.373 -6.645 3
E5D C5 C 12.672 -5.895 4
E5D C6 C 13.061 -4.446 5
E5D C8 C 12.000 -1.885 6
E5D C10 C 9.750 -3.184 7
E5D C11 C 9.750 -0.587 8
E5D C12 C 8.250 -0.587 9
E5D N13 N 7.500 -1.885 10
E5D C18 C 7.326 -6.257 11
E5D C14 C 6.027 -2.507 12
E5D C16 C 6.027 -4.007 13
E5D C17 C 6.027 -5.507 14
E5D C19 C 8.626 -5.507 15
E5D C20 C 8.626 -4.007 16
E5D C21 C 7.326 -3.257 17
E5D C22 C 8.626 -7.007 18
E5D C24 C 7.500 0.713 19
E5D C26 C 8.250 2.012 20
E5D C28 C 8.250 4.610 21
E5D C29 C 7.500 5.909 22
E5D C30 C 6.000 5.909 23
E5D C31 C 5.250 7.208 24
E5D C32 C 6.000 8.507 25
E5D C33 C 7.500 8.507 26
E5D C34 C 8.250 7.208 27
E5D C35 C 3.750 7.208 28
E5D C36 C 3.000 8.507 29
E5D C37 C 3.000 5.909 30
E5D C7 C 12.000 -3.385 31
E5D C9 C 10.500 -1.885 32
E5D N27 N 7.500 3.311 33
E5D N3 N 9.925 -6.257 34
E5D O15 O 4.739 -1.738 35
E5D O23 O 8.626 -8.507 36
E5D O25 O 6.000 0.713 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
E5D C35 C36 SINGLE NONE 1
E5D C35 C37 SINGLE NONE 2
E5D C35 C31 SINGLE NONE 3
E5D C32 C31 SINGLE NONE 4
E5D C32 C33 DOUBLE NONE 5
E5D C31 C30 DOUBLE NONE 6
E5D C33 C34 SINGLE NONE 7
E5D C30 C29 SINGLE NONE 8
E5D C34 C29 DOUBLE NONE 9
E5D C29 C28 SINGLE NONE 10
E5D C28 N27 SINGLE NONE 11
E5D N27 C26 SINGLE NONE 12
E5D C26 C24 SINGLE NONE 13
E5D C24 O25 SINGLE BEGINDASH 14
E5D O15 C14 DOUBLE NONE 15
E5D C9 C10 SINGLE BEGINWEDGE 16
E5D C24 C12 SINGLE NONE 17
E5D C12 C11 SINGLE BEGINDASH 18
E5D C12 N13 SINGLE NONE 19
E5D C14 N13 SINGLE NONE 20
E5D C14 C16 SINGLE NONE 21
E5D C11 C9 SINGLE NONE 22
E5D C9 C8 SINGLE NONE 23
E5D C21 C16 DOUBLE NONE 24
E5D C21 C20 SINGLE NONE 25
E5D C16 C17 SINGLE NONE 26
E5D C8 C7 SINGLE NONE 27
E5D C20 C19 DOUBLE NONE 28
E5D C7 C6 SINGLE NONE 29
E5D C17 C18 DOUBLE NONE 30
E5D C6 C5 SINGLE NONE 31
E5D C19 C18 SINGLE NONE 32
E5D C18 C22 SINGLE NONE 33
E5D C5 C4 SINGLE NONE 34
E5D C4 N3 SINGLE NONE 35
E5D C22 N3 SINGLE NONE 36
E5D C22 O23 DOUBLE NONE 37
E5D N3 C2 SINGLE NONE 38
E5D C2 C1 SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
E5D MurckoScaffold S1 scaffold 'O=C1NCCCCCCC[C@@H](CCNCc2ccccc2)NC(=O)c2cccc1c2' InChI=1S/C25H33N3O2/c29-24-21-12-9-13-22(18-21)25(30)28-23(14-7-2-1-3-8-16-27-24)15-17-26-19-20-10-5-4-6-11-20/h4-6,9-13,18,23,26H,1-3,7-8,14-17,19H2,(H,27,29)(H,28,30)/t23-/m0/s1 DCKGDIVOWKFYQE-QHCPKHFHSA-N
E5D amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
E5D phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
E5D C4 S1 1
E5D C5 S1 1
E5D C6 S1 1
E5D C8 S1 1
E5D C11 S1 1
E5D C12 S1 1
E5D N13 S1 1
E5D C18 S1 1
E5D C14 S1 1
E5D C16 S1 1
E5D C17 S1 1
E5D C19 S1 1
E5D C20 S1 1
E5D C21 S1 1
E5D C22 S1 1
E5D C24 S1 1
E5D C26 S1 1
E5D C28 S1 1
E5D C29 S1 1
E5D C30 S1 1
E5D C31 S1 1
E5D C32 S1 1
E5D C33 S1 1
E5D C34 S1 1
E5D C7 S1 1
E5D C9 S1 1
E5D N27 S1 1
E5D N3 S1 1
E5D O15 S1 1
E5D O23 S1 1
E5D N13 F1 1
E5D C14 F1 1
E5D O15 F1 1
E5D C16 F1 1
E5D N3 F1 2
E5D C22 F1 2
E5D O23 F1 2
E5D C18 F1 2
E5D C18 F2 1
E5D C17 F2 1
E5D C16 F2 1
E5D C21 F2 1
E5D C20 F2 1
E5D C19 F2 1
E5D C29 F2 2
E5D C30 F2 2
E5D C31 F2 2
E5D C32 F2 2
E5D C33 F2 2
E5D C34 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id E5D
_pdbe_chem_comp_rdkit_properties.exactmw 507.346
_pdbe_chem_comp_rdkit_properties.amw 507.719
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 82
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.548
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 285.820
_pdbe_chem_comp_rdkit_properties.tpsa 81.670
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.903
_pdbe_chem_comp_rdkit_properties.CrippenMR 148.703
_pdbe_chem_comp_rdkit_properties.chi0v 18.066
_pdbe_chem_comp_rdkit_properties.chi1v 9.428
_pdbe_chem_comp_rdkit_properties.chi2v 3.720
_pdbe_chem_comp_rdkit_properties.chi3v 3.720
_pdbe_chem_comp_rdkit_properties.chi4v 2.163
_pdbe_chem_comp_rdkit_properties.chi0n 63.066
_pdbe_chem_comp_rdkit_properties.chi1n 31.730
_pdbe_chem_comp_rdkit_properties.chi2n 3.720
_pdbe_chem_comp_rdkit_properties.chi3n 3.720
_pdbe_chem_comp_rdkit_properties.chi4n 2.163
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.700
_pdbe_chem_comp_rdkit_properties.kappa1 5.754
_pdbe_chem_comp_rdkit_properties.kappa2 14.294
_pdbe_chem_comp_rdkit_properties.kappa3 8.682
_pdbe_chem_comp_rdkit_properties.Phi 2.223
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
E5D UniChem PDBe E5D
E5D UniChem SureChEMBL SCHEMBL3176737
E5D UniChem PubChem 68538837
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
E5D C1 6.787 3.032 0.393 ETKDGv3 1
E5D C2 5.807 2.031 -0.210 ETKDGv3 2
E5D C4 6.752 -0.267 -0.782 ETKDGv3 3
E5D C5 5.801 -1.440 -1.107 ETKDGv3 4
E5D C6 5.063 -1.277 -2.450 ETKDGv3 5
E5D C8 2.570 -1.048 -1.933 ETKDGv3 6
E5D C10 0.958 0.599 -3.040 ETKDGv3 7
E5D C11 0.156 -0.858 -1.112 ETKDGv3 8
E5D C12 -0.263 -0.299 0.269 ETKDGv3 9
E5D N13 0.881 -0.346 1.184 ETKDGv3 10
E5D C18 4.905 0.613 2.404 ETKDGv3 11
E5D C14 1.126 0.666 2.170 ETKDGv3 12
E5D C16 2.480 0.830 2.734 ETKDGv3 13
E5D C17 3.665 0.496 1.904 ETKDGv3 14
E5D C19 5.086 1.062 3.805 ETKDGv3 15
E5D C20 4.023 1.391 4.549 ETKDGv3 16
E5D C21 2.661 1.279 3.988 ETKDGv3 17
E5D C22 6.079 0.274 1.579 ETKDGv3 18
E5D C24 -1.458 -1.060 0.908 ETKDGv3 19
E5D C26 -2.795 -0.828 0.177 ETKDGv3 20
E5D C28 -3.971 -1.207 -1.927 ETKDGv3 21
E5D C29 -5.344 -1.385 -1.324 ETKDGv3 22
E5D C30 -6.024 -0.234 -0.680 ETKDGv3 23
E5D C31 -7.232 -0.384 -0.102 ETKDGv3 24
E5D C32 -7.877 -1.724 -0.120 ETKDGv3 25
E5D C33 -7.264 -2.763 -0.697 ETKDGv3 26
E5D C34 -5.939 -2.590 -1.322 ETKDGv3 27
E5D C35 -7.917 0.794 0.563 ETKDGv3 28
E5D C36 -8.106 0.539 2.063 ETKDGv3 29
E5D C37 -9.256 1.104 -0.115 ETKDGv3 30
E5D C7 3.853 -0.327 -2.386 ETKDGv3 31
E5D C9 1.369 -0.090 -1.727 ETKDGv3 32
E5D N27 -2.907 -1.670 -1.024 ETKDGv3 33
E5D N3 6.152 0.657 0.190 ETKDGv3 34
E5D O15 0.185 1.413 2.556 ETKDGv3 35
E5D O23 7.038 -0.352 2.106 ETKDGv3 36
E5D O25 -1.190 -2.438 1.002 ETKDGv3 37
E5D H1 6.721 3.020 1.501 ETKDGv3 38
E5D H2 6.542 4.055 0.036 ETKDGv3 39
E5D H3 7.824 2.782 0.084 ETKDGv3 40
E5D H4 4.775 2.278 0.115 ETKDGv3 41
E5D H5 5.832 2.139 -1.316 ETKDGv3 42
E5D H6 7.050 0.269 -1.709 ETKDGv3 43
E5D H7 7.700 -0.670 -0.362 ETKDGv3 44
E5D H8 5.079 -1.612 -0.280 ETKDGv3 45
E5D H9 6.417 -2.363 -1.180 ETKDGv3 46
E5D H10 4.726 -2.279 -2.799 ETKDGv3 47
E5D H11 5.775 -0.911 -3.221 ETKDGv3 48
E5D H12 2.779 -1.565 -0.972 ETKDGv3 49
E5D H13 2.300 -1.824 -2.682 ETKDGv3 50
E5D H14 0.049 1.216 -2.877 ETKDGv3 51
E5D H15 0.744 -0.155 -3.828 ETKDGv3 52
E5D H16 1.756 1.284 -3.394 ETKDGv3 53
E5D H17 -0.710 -0.798 -1.801 ETKDGv3 54
E5D H18 0.384 -1.942 -1.009 ETKDGv3 55
E5D H19 -0.561 0.763 0.120 ETKDGv3 56
E5D H20 1.523 -1.170 1.145 ETKDGv3 57
E5D H21 3.524 0.163 0.883 ETKDGv3 58
E5D H22 6.081 1.146 4.226 ETKDGv3 59
E5D H23 4.158 1.731 5.567 ETKDGv3 60
E5D H24 1.815 1.533 4.616 ETKDGv3 61
E5D H25 -1.601 -0.647 1.935 ETKDGv3 62
E5D H26 -3.626 -1.072 0.876 ETKDGv3 63
E5D H27 -2.884 0.251 -0.083 ETKDGv3 64
E5D H28 -3.802 -0.144 -2.207 ETKDGv3 65
E5D H29 -3.909 -1.785 -2.875 ETKDGv3 66
E5D H30 -5.530 0.730 -0.675 ETKDGv3 67
E5D H31 -8.847 -1.870 0.337 ETKDGv3 68
E5D H32 -7.737 -3.737 -0.704 ETKDGv3 69
E5D H33 -5.452 -3.446 -1.772 ETKDGv3 70
E5D H34 -7.285 1.705 0.465 ETKDGv3 71
E5D H35 -8.793 -0.315 2.241 ETKDGv3 72
E5D H36 -8.531 1.442 2.552 ETKDGv3 73
E5D H37 -7.126 0.317 2.537 ETKDGv3 74
E5D H38 -9.975 0.267 0.013 ETKDGv3 75
E5D H39 -9.101 1.282 -1.201 ETKDGv3 76
E5D H40 -9.702 2.022 0.325 ETKDGv3 77
E5D H41 3.695 0.078 -3.407 ETKDGv3 78
E5D H42 4.063 0.528 -1.714 ETKDGv3 79
E5D H43 1.696 0.717 -1.034 ETKDGv3 80
E5D H44 -3.111 -2.656 -0.735 ETKDGv3 81
E5D H46 -0.582 -2.565 1.776 ETKDGv3 82
#