data_E5K
#
_chem_comp.id E5K
_chem_comp.name 1-[4-(4-ethylpiperazin-1-yl)piperidin-1-yl]-2-[4-(4-methoxyphenyl)phenoxy]ethanone
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H35 N3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-02-20
_chem_comp.pdbx_modified_date 2018-10-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 437.574
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code E5K
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6FSE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
E5K O01 O1 O 0 1 N N N N N N 31.720 22.044 8.235 -1.289 -3.118 -0.824 O01 E5K 1
E5K C02 C1 C 0 1 N N N N N N 31.738 22.809 9.202 -1.239 -2.210 -0.021 C02 E5K 2
E5K N03 N1 N 0 1 N N N N N N 30.506 22.925 9.966 -2.345 -1.853 0.662 N03 E5K 3
E5K C04 C2 C 0 1 N N N N N N 30.331 23.822 11.181 -3.618 -2.554 0.445 C04 E5K 4
E5K C05 C3 C 0 1 N N N N N N 29.613 23.179 12.390 -4.699 -1.521 0.112 C05 E5K 5
E5K C06 C4 C 0 1 N N N N N N 29.253 22.220 9.661 -2.299 -0.759 1.642 C06 E5K 6
E5K C07 C5 C 0 1 N N N N N N 28.568 21.528 10.861 -3.391 0.258 1.298 C07 E5K 7
E5K C08 C6 C 0 1 N N N N N N 28.301 22.508 11.994 -4.745 -0.462 1.215 C08 E5K 8
E5K N09 N2 N 0 1 N N N N N N 27.819 21.835 13.265 -5.801 0.515 0.918 N09 E5K 9
E5K C10 C7 C 0 1 N N N N N N 28.797 20.837 13.745 -7.133 -0.089 1.065 C10 E5K 10
E5K C11 C8 C 0 1 N N N N N N 28.186 20.043 14.949 -8.203 0.979 0.825 C11 E5K 11
E5K N12 N3 N 0 1 N N N N N N 26.819 19.494 14.675 -8.031 1.548 -0.519 N12 E5K 12
E5K C13 C9 C 0 1 N N N N N N 26.251 19.026 15.968 -9.087 2.525 -0.816 C13 E5K 13
E5K C14 C10 C 0 1 N N N N N N 26.923 17.719 16.299 -9.026 2.908 -2.296 C14 E5K 14
E5K C15 C11 C 0 1 N N N N N N 25.976 20.463 14.176 -6.699 2.152 -0.665 C15 E5K 15
E5K C16 C12 C 0 1 N N N N N N 26.527 21.166 12.940 -5.629 1.084 -0.426 C16 E5K 16
E5K C17 C13 C 0 1 N N N N N N 33.150 23.592 9.504 0.060 -1.485 0.217 C17 E5K 17
E5K O18 O2 O 0 1 N N N N N N 34.255 23.372 8.574 1.078 -2.047 -0.614 O18 E5K 18
E5K C19 C14 C 0 1 Y N N N N N 35.325 24.300 8.503 2.320 -1.503 -0.521 C19 E5K 19
E5K C20 C15 C 0 1 Y N N N N N 36.021 24.554 7.302 2.553 -0.455 0.358 C20 E5K 20
E5K C21 C16 C 0 1 Y N N N N N 37.097 25.478 7.223 3.813 0.098 0.455 C21 E5K 21
E5K C22 C17 C 0 1 Y N N N N N 37.605 26.244 8.298 4.852 -0.396 -0.331 C22 E5K 22
E5K C23 C18 C 0 1 Y N N N N N 38.806 27.261 8.158 6.209 0.196 -0.228 C23 E5K 23
E5K C31 C19 C 0 1 Y N N N N N 36.885 25.965 9.486 4.615 -1.449 -1.212 C31 E5K 24
E5K C32 C20 C 0 1 Y N N N N N 35.804 25.045 9.597 3.355 -2.002 -1.301 C32 E5K 25
E5K H1 H1 H 0 1 N N N N N N 31.330 24.142 11.512 -3.513 -3.253 -0.384 H1 E5K 26
E5K H2 H2 H 0 1 N N N N N N 29.748 24.702 10.871 -3.896 -3.095 1.349 H2 E5K 27
E5K H3 H3 H 0 1 N N N N N N 30.277 22.423 12.835 -4.465 -1.044 -0.840 H3 E5K 28
E5K H4 H4 H 0 1 N N N N N N 29.400 23.962 13.132 -5.667 -2.017 0.042 H4 E5K 29
E5K H5 H5 H 0 1 N N N N N N 28.546 22.952 9.243 -2.471 -1.157 2.642 H5 E5K 30
E5K H6 H6 H 0 1 N N N N N N 29.473 21.450 8.906 -1.323 -0.274 1.603 H6 E5K 31
E5K H7 H7 H 0 1 N N N N N N 27.612 21.099 10.527 -3.431 1.025 2.071 H7 E5K 32
E5K H8 H8 H 0 1 N N N N N N 29.222 20.724 11.231 -3.168 0.721 0.337 H8 E5K 33
E5K H9 H9 H 0 1 N N N N N N 27.574 23.268 11.671 -4.956 -0.947 2.168 H9 E5K 34
E5K H11 H11 H 0 1 N N N N N N 29.038 20.139 12.930 -7.250 -0.891 0.337 H11 E5K 35
E5K H12 H12 H 0 1 N N N N N N 29.714 21.350 14.072 -7.240 -0.492 2.072 H12 E5K 36
E5K H13 H13 H 0 1 N N N N N N 28.856 19.204 15.188 -9.192 0.527 0.905 H13 E5K 37
E5K H14 H14 H 0 1 N N N N N N 28.122 20.719 15.814 -8.103 1.768 1.570 H14 E5K 38
E5K H16 H16 H 0 1 N N N N N N 26.452 19.765 16.758 -10.060 2.086 -0.594 H16 E5K 39
E5K H17 H17 H 0 1 N N N N N N 25.165 18.878 15.872 -8.942 3.415 -0.204 H17 E5K 40
E5K H18 H18 H 0 1 N N N N N N 26.531 17.335 17.252 -8.053 3.346 -2.517 H18 E5K 41
E5K H19 H19 H 0 1 N N N N N N 26.721 16.990 15.500 -9.171 2.018 -2.908 H19 E5K 42
E5K H20 H20 H 0 1 N N N N N N 28.008 17.877 16.386 -9.810 3.633 -2.516 H20 E5K 43
E5K H21 H21 H 0 1 N N N N N N 25.808 21.216 14.960 -6.591 2.555 -1.672 H21 E5K 44
E5K H22 H22 H 0 1 N N N N N N 25.019 19.990 13.911 -6.582 2.955 0.063 H22 E5K 45
E5K H23 H23 H 0 1 N N N N N N 25.803 21.920 12.597 -4.640 1.536 -0.505 H23 E5K 46
E5K H24 H24 H 0 1 N N N N N N 26.691 20.426 12.143 -5.729 0.295 -1.171 H24 E5K 47
E5K H25 H25 H 0 1 N N N N N N 33.492 23.281 10.502 -0.063 -0.429 -0.023 H25 E5K 48
E5K H26 H26 H 0 1 N N N N N N 32.934 24.671 9.510 0.348 -1.589 1.263 H26 E5K 49
E5K H27 H27 H 0 1 N N N N N N 35.724 24.025 6.408 1.748 -0.071 0.966 H27 E5K 50
E5K H28 H28 H 0 1 N N N N N N 37.568 25.607 6.259 3.994 0.915 1.139 H28 E5K 51
E5K H32 H32 H 0 1 N N N N N N 37.180 26.493 10.380 5.419 -1.835 -1.823 H32 E5K 52
E5K H33 H33 H 0 1 N N N N N N 35.332 24.913 10.560 3.171 -2.821 -1.981 H33 E5K 53
E5K C1 C21 C 0 1 Y N N N N N ? ? ? 7.248 -0.299 -1.014 C1 E5K 54
E5K C2 C22 C 0 1 Y N N N N N ? ? ? 8.508 0.254 -0.917 C2 E5K 55
E5K C3 C23 C 0 1 Y N N N N N ? ? ? 8.741 1.302 -0.037 C3 E5K 56
E5K C4 C24 C 0 1 Y N N N N N ? ? ? 7.708 1.797 0.747 C4 E5K 57
E5K C5 C25 C 0 1 Y N N N N N ? ? ? 6.445 1.253 0.650 C5 E5K 58
E5K O1 O3 O 0 1 N N N N N N ? ? ? 9.983 1.845 0.057 O1 E5K 59
E5K C7 C26 C 0 1 N N N N N N ? ? ? 10.153 2.921 0.982 C7 E5K 60
E5K H10 H10 H 0 1 N N N N N N ? ? ? 7.067 -1.115 -1.698 H10 E5K 61
E5K H15 H15 H 0 1 N N N N N N ? ? ? 9.314 -0.130 -1.525 H15 E5K 62
E5K H29 H29 H 0 1 N N N N N N ? ? ? 7.893 2.612 1.431 H29 E5K 63
E5K H30 H30 H 0 1 N N N N N N ? ? ? 5.641 1.638 1.260 H30 E5K 64
E5K H31 H31 H 0 1 N N N N N N ? ? ? 9.494 3.744 0.706 H31 E5K 65
E5K H34 H34 H 0 1 N N N N N N ? ? ? 9.907 2.578 1.987 H34 E5K 66
E5K H35 H35 H 0 1 N N N N N N ? ? ? 11.189 3.261 0.957 H35 E5K 67
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
E5K C21 C20 DOUB Y N 1
E5K C21 C22 SING Y N 2
E5K C20 C19 SING Y N 3
E5K C23 C22 SING N N 4
E5K O01 C02 DOUB N N 5
E5K C22 C31 DOUB Y N 6
E5K C19 O18 SING N N 7
E5K C19 C32 DOUB Y N 8
E5K O18 C17 SING N N 9
E5K C02 C17 SING N N 10
E5K C02 N03 SING N N 11
E5K C31 C32 SING Y N 12
E5K C06 N03 SING N N 13
E5K C06 C07 SING N N 14
E5K N03 C04 SING N N 15
E5K C07 C08 SING N N 16
E5K C04 C05 SING N N 17
E5K C08 C05 SING N N 18
E5K C08 N09 SING N N 19
E5K C16 N09 SING N N 20
E5K C16 C15 SING N N 21
E5K N09 C10 SING N N 22
E5K C10 C11 SING N N 23
E5K C15 N12 SING N N 24
E5K N12 C11 SING N N 25
E5K N12 C13 SING N N 26
E5K C13 C14 SING N N 27
E5K C04 H1 SING N N 28
E5K C04 H2 SING N N 29
E5K C05 H3 SING N N 30
E5K C05 H4 SING N N 31
E5K C06 H5 SING N N 32
E5K C06 H6 SING N N 33
E5K C07 H7 SING N N 34
E5K C07 H8 SING N N 35
E5K C08 H9 SING N N 36
E5K C10 H11 SING N N 37
E5K C10 H12 SING N N 38
E5K C11 H13 SING N N 39
E5K C11 H14 SING N N 40
E5K C13 H16 SING N N 41
E5K C13 H17 SING N N 42
E5K C14 H18 SING N N 43
E5K C14 H19 SING N N 44
E5K C14 H20 SING N N 45
E5K C15 H21 SING N N 46
E5K C15 H22 SING N N 47
E5K C16 H23 SING N N 48
E5K C16 H24 SING N N 49
E5K C17 H25 SING N N 50
E5K C17 H26 SING N N 51
E5K C20 H27 SING N N 52
E5K C21 H28 SING N N 53
E5K C31 H32 SING N N 54
E5K C32 H33 SING N N 55
E5K C23 C1 SING Y N 56
E5K C1 C2 DOUB Y N 57
E5K C2 C3 SING Y N 58
E5K C3 C4 DOUB Y N 59
E5K C4 C5 SING Y N 60
E5K C5 C23 DOUB Y N 61
E5K C3 O1 SING N N 62
E5K O1 C7 SING N N 63
E5K C1 H10 SING N N 64
E5K C2 H15 SING N N 65
E5K C4 H29 SING N N 66
E5K C5 H30 SING N N 67
E5K C7 H31 SING N N 68
E5K C7 H34 SING N N 69
E5K C7 H35 SING N N 70
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
E5K InChI InChI 1.03 InChI=1S/C26H35N3O3/c1-3-27-16-18-28(19-17-27)23-12-14-29(15-13-23)26(30)20-32-25-10-6-22(7-11-25)21-4-8-24(31-2)9-5-21/h4-11,23H,3,12-20H2,1-2H3
E5K InChIKey InChI 1.03 HQHBRBVCWLKIRI-UHFFFAOYSA-N
E5K SMILES_CANONICAL CACTVS 3.385 CCN1CCN(CC1)C2CCN(CC2)C(=O)COc3ccc(cc3)c4ccc(OC)cc4
E5K SMILES CACTVS 3.385 CCN1CCN(CC1)C2CCN(CC2)C(=O)COc3ccc(cc3)c4ccc(OC)cc4
E5K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CCN1CCN(CC1)C2CCN(CC2)C(=O)COc3ccc(cc3)c4ccc(cc4)OC
E5K SMILES "OpenEye OEToolkits" 2.0.6 CCN1CCN(CC1)C2CCN(CC2)C(=O)COc3ccc(cc3)c4ccc(cc4)OC
#
_pdbx_chem_comp_identifier.comp_id E5K
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier 1-[4-(4-ethylpiperazin-1-yl)piperidin-1-yl]-2-[4-(4-methoxyphenyl)phenoxy]ethanone
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
E5K 'Create component' 2018-02-20 EBI
E5K 'Modify value order' 2018-03-20 EBI
E5K 'Initial release' 2018-10-31 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
E5K O01 O 14.691 -1.875 1
E5K C02 C 13.392 -1.125 2
E5K N03 N 13.392 0.375 3
E5K C04 C 14.691 1.125 4
E5K C05 C 14.691 2.625 5
E5K C06 C 12.093 1.125 6
E5K C07 C 12.093 2.625 7
E5K C08 C 13.392 3.375 8
E5K N09 N 13.392 4.875 9
E5K C10 C 14.691 5.625 10
E5K C11 C 14.691 7.125 11
E5K N12 N 13.392 7.875 12
E5K C13 C 13.392 9.375 13
E5K C14 C 14.691 10.125 14
E5K C15 C 12.093 7.125 15
E5K C16 C 12.093 5.625 16
E5K C17 C 12.093 -1.875 17
E5K O18 O 12.093 -3.375 18
E5K C19 C 10.794 -4.125 19
E5K C20 C 10.794 -5.625 20
E5K C21 C 9.495 -6.375 21
E5K C22 C 8.196 -5.625 22
E5K C23 C 6.897 -6.375 23
E5K C31 C 8.196 -4.125 24
E5K C32 C 9.495 -3.375 25
E5K C1 C 6.897 -7.875 26
E5K C2 C 5.598 -8.625 27
E5K C3 C 4.299 -7.875 28
E5K C4 C 4.299 -6.375 29
E5K C5 C 5.598 -5.625 30
E5K O1 O 3.000 -8.625 31
E5K C7 C 3.000 -10.125 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
E5K C21 C20 DOUBLE NONE 1
E5K C21 C22 SINGLE NONE 2
E5K C20 C19 SINGLE NONE 3
E5K C23 C22 SINGLE NONE 4
E5K O01 C02 DOUBLE NONE 5
E5K C22 C31 DOUBLE NONE 6
E5K C19 O18 SINGLE NONE 7
E5K C19 C32 DOUBLE NONE 8
E5K O18 C17 SINGLE NONE 9
E5K C02 C17 SINGLE NONE 10
E5K C02 N03 SINGLE NONE 11
E5K C31 C32 SINGLE NONE 12
E5K C06 N03 SINGLE NONE 13
E5K C06 C07 SINGLE NONE 14
E5K N03 C04 SINGLE NONE 15
E5K C07 C08 SINGLE NONE 16
E5K C04 C05 SINGLE NONE 17
E5K C08 C05 SINGLE NONE 18
E5K C08 N09 SINGLE NONE 19
E5K C16 N09 SINGLE NONE 20
E5K C16 C15 SINGLE NONE 21
E5K N09 C10 SINGLE NONE 22
E5K C10 C11 SINGLE NONE 23
E5K C15 N12 SINGLE NONE 24
E5K N12 C11 SINGLE NONE 25
E5K N12 C13 SINGLE NONE 26
E5K C13 C14 SINGLE NONE 27
E5K C23 C1 DOUBLE NONE 28
E5K C1 C2 SINGLE NONE 29
E5K C2 C3 DOUBLE NONE 30
E5K C3 C4 SINGLE NONE 31
E5K C4 C5 DOUBLE NONE 32
E5K C5 C23 SINGLE NONE 33
E5K C3 O1 SINGLE NONE 34
E5K O1 C7 SINGLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
E5K MurckoScaffold S1 scaffold O=C(COc1ccc(-c2ccccc2)cc1)N1CCC(N2CCNCC2)CC1 InChI=1S/C23H29N3O2/c27-23(26-14-10-21(11-15-26)25-16-12-24-13-17-25)18-28-22-8-6-20(7-9-22)19-4-2-1-3-5-19/h1-9,21,24H,10-18H2 KTGAIZHNMMMGNC-UHFFFAOYSA-N
E5K amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
E5K phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
E5K piperazine F3 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
E5K Z90664455 F4 fragment CC(=O)N1CCC(N)CC1 InChI=1S/C7H14N2O/c1-6(10)9-4-2-7(8)3-5-9/h7H,2-5,8H2,1H3 NLHBHVGPMMXWIM-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
E5K O01 S1 1
E5K C02 S1 1
E5K N03 S1 1
E5K C04 S1 1
E5K C05 S1 1
E5K C06 S1 1
E5K C07 S1 1
E5K C08 S1 1
E5K N09 S1 1
E5K C10 S1 1
E5K C11 S1 1
E5K N12 S1 1
E5K C15 S1 1
E5K C16 S1 1
E5K C17 S1 1
E5K O18 S1 1
E5K C19 S1 1
E5K C20 S1 1
E5K C21 S1 1
E5K C22 S1 1
E5K C23 S1 1
E5K C31 S1 1
E5K C32 S1 1
E5K C1 S1 1
E5K C2 S1 1
E5K C3 S1 1
E5K C4 S1 1
E5K C5 S1 1
E5K N03 F1 1
E5K C02 F1 1
E5K O01 F1 1
E5K C17 F1 1
E5K C19 F2 1
E5K C20 F2 1
E5K C21 F2 1
E5K C22 F2 1
E5K C31 F2 1
E5K C32 F2 1
E5K C23 F2 2
E5K H1 F2 2
E5K H2 F2 2
E5K H3 F2 2
E5K H4 F2 2
E5K H5 F2 2
E5K N09 F3 1
E5K C16 F3 1
E5K C15 F3 1
E5K N12 F3 1
E5K C11 F3 1
E5K C10 F3 1
E5K C17 F4 1
E5K C02 F4 1
E5K O01 F4 1
E5K N03 F4 1
E5K C06 F4 1
E5K C07 F4 1
E5K C08 F4 1
E5K N09 F4 1
E5K C05 F4 1
E5K C04 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id E5K
_pdbe_chem_comp_rdkit_properties.exactmw 437.268
_pdbe_chem_comp_rdkit_properties.amw 437.584
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 67
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 240.428
_pdbe_chem_comp_rdkit_properties.tpsa 45.250
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.065
_pdbe_chem_comp_rdkit_properties.CrippenMR 124.672
_pdbe_chem_comp_rdkit_properties.chi0v 15.566
_pdbe_chem_comp_rdkit_properties.chi1v 8.283
_pdbe_chem_comp_rdkit_properties.chi2v 3.455
_pdbe_chem_comp_rdkit_properties.chi3v 3.455
_pdbe_chem_comp_rdkit_properties.chi4v 2.008
_pdbe_chem_comp_rdkit_properties.chi0n 50.566
_pdbe_chem_comp_rdkit_properties.chi1n 25.783
_pdbe_chem_comp_rdkit_properties.chi2n 3.455
_pdbe_chem_comp_rdkit_properties.chi3n 3.455
_pdbe_chem_comp_rdkit_properties.chi4n 2.008
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.570
_pdbe_chem_comp_rdkit_properties.kappa1 5.232
_pdbe_chem_comp_rdkit_properties.kappa2 10.836
_pdbe_chem_comp_rdkit_properties.kappa3 5.612
_pdbe_chem_comp_rdkit_properties.Phi 1.772
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
E5K UniChem ChEMBL CHEMBL4284619
E5K UniChem PDBe E5K
E5K UniChem PubChem 137349228
E5K UniChem BindingDb 50467882
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
E5K O01 0.414 -4.121 -0.779 ETKDGv3 1
E5K C02 0.072 -3.490 0.258 ETKDGv3 2
E5K N03 -0.979 -2.507 0.176 ETKDGv3 3
E5K C04 -1.773 -2.140 1.355 ETKDGv3 4
E5K C05 -3.248 -1.918 0.982 ETKDGv3 5
E5K C06 -1.135 -1.754 -1.074 ETKDGv3 6
E5K C07 -2.156 -0.621 -0.932 ETKDGv3 7
E5K C08 -3.494 -1.155 -0.358 ETKDGv3 8
E5K N09 -4.512 -0.082 -0.151 ETKDGv3 9
E5K C10 -4.596 0.877 -1.280 ETKDGv3 10
E5K C11 -5.849 1.781 -1.196 ETKDGv3 11
E5K N12 -6.448 1.794 0.155 ETKDGv3 12
E5K C13 -5.612 2.506 1.151 ETKDGv3 13
E5K C14 -5.826 4.014 1.053 ETKDGv3 14
E5K C15 -6.827 0.426 0.582 ETKDGv3 15
E5K C16 -5.852 -0.660 0.084 ETKDGv3 16
E5K C17 0.783 -3.783 1.551 ETKDGv3 17
E5K O18 2.184 -3.941 1.328 ETKDGv3 18
E5K C19 3.056 -2.901 0.971 ETKDGv3 19
E5K C20 2.601 -1.490 0.838 ETKDGv3 20
E5K C21 3.466 -0.533 0.482 ETKDGv3 21
E5K C22 4.891 -0.861 0.219 ETKDGv3 22
E5K C23 5.847 0.203 -0.181 ETKDGv3 23
E5K C31 5.298 -2.138 0.351 ETKDGv3 24
E5K C32 4.342 -3.194 0.741 ETKDGv3 25
E5K H1 -1.733 -2.940 2.125 ETKDGv3 26
E5K H2 -1.354 -1.212 1.799 ETKDGv3 27
E5K H3 -3.714 -1.371 1.832 ETKDGv3 28
E5K H4 -3.748 -2.909 0.922 ETKDGv3 29
E5K H5 -0.156 -1.317 -1.369 ETKDGv3 30
E5K H6 -1.466 -2.447 -1.878 ETKDGv3 31
E5K H7 -1.749 0.174 -0.270 ETKDGv3 32
E5K H8 -2.300 -0.190 -1.945 ETKDGv3 33
E5K H9 -3.885 -1.886 -1.105 ETKDGv3 34
E5K H11 -4.607 0.340 -2.255 ETKDGv3 35
E5K H12 -3.707 1.544 -1.255 ETKDGv3 36
E5K H13 -5.601 2.811 -1.529 ETKDGv3 37
E5K H14 -6.611 1.408 -1.916 ETKDGv3 38
E5K H16 -4.531 2.278 1.028 ETKDGv3 39
E5K H17 -5.891 2.215 2.187 ETKDGv3 40
E5K H18 -5.420 4.412 0.101 ETKDGv3 41
E5K H19 -6.909 4.251 1.118 ETKDGv3 42
E5K H20 -5.300 4.520 1.890 ETKDGv3 43
E5K H21 -6.928 0.356 1.687 ETKDGv3 44
E5K H22 -7.838 0.201 0.179 ETKDGv3 45
E5K H23 -5.825 -1.469 0.844 ETKDGv3 46
E5K H24 -6.245 -1.113 -0.856 ETKDGv3 47
E5K H25 0.620 -2.983 2.303 ETKDGv3 48
E5K H26 0.380 -4.729 1.967 ETKDGv3 49
E5K H27 1.573 -1.218 1.032 ETKDGv3 50
E5K H28 3.118 0.490 0.408 ETKDGv3 51
E5K H32 6.324 -2.419 0.151 ETKDGv3 52
E5K H33 4.691 -4.215 0.833 ETKDGv3 53
E5K C1 5.473 1.180 -1.028 ETKDGv3 54
E5K C2 6.428 2.236 -1.428 ETKDGv3 55
E5K C3 7.686 2.234 -0.945 ETKDGv3 56
E5K C4 8.097 1.165 -0.011 ETKDGv3 57
E5K C5 7.234 0.208 0.352 ETKDGv3 58
E5K O1 8.633 3.210 -1.292 ETKDGv3 59
E5K C7 8.389 4.299 -2.177 ETKDGv3 60
E5K H10 4.477 1.200 -1.452 ETKDGv3 61
E5K H15 6.089 2.999 -2.114 ETKDGv3 62
E5K H29 9.103 1.161 0.388 ETKDGv3 63
E5K H30 7.554 -0.553 1.052 ETKDGv3 64
E5K H31 8.115 3.919 -3.184 ETKDGv3 65
E5K H34 7.576 4.941 -1.777 ETKDGv3 66
E5K H35 9.311 4.908 -2.267 ETKDGv3 67
#