data_E6Q
#
_chem_comp.id E6Q
_chem_comp.name 3-phenyl-1~{H}-pyrrolo[3,4-g]indol-8-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H10 N2 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-02-21
_chem_comp.pdbx_modified_date 2018-05-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 246.263
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code E6Q
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6FT7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
E6Q C4 C1 C 0 1 Y N N N N N 62.854 64.022 52.400 -3.499 0.907 0.803 C4 E6Q 1
E6Q C5 C2 C 0 1 Y N N N N N 63.927 64.844 50.429 -5.268 -0.508 0.028 C5 E6Q 2
E6Q C6 C3 C 0 1 Y N N N N N 62.934 64.104 51.021 -4.825 0.525 0.834 C6 E6Q 3
E6Q N1 N1 N 0 1 Y N N N N N 64.396 64.529 56.835 0.659 1.910 -0.228 N1 E6Q 4
E6Q C7 C4 C 0 1 Y N N N N N 63.722 64.581 54.680 -1.182 0.659 -0.085 C7 E6Q 5
E6Q C8 C5 C 0 1 Y N N N N N 62.539 64.487 55.542 -0.013 -0.221 0.036 C8 E6Q 6
E6Q N2 N2 N 0 1 N N N N N N 61.085 64.306 59.932 4.622 -0.434 0.070 N2 E6Q 7
E6Q C9 C6 C 0 1 Y N N N N N 64.810 64.593 55.523 -0.707 1.922 -0.237 C9 E6Q 8
E6Q C10 C7 C 0 1 Y N N N N N 63.024 64.473 56.865 1.122 0.626 -0.067 C10 E6Q 9
E6Q C11 C8 C 0 1 Y N N N N N 61.163 64.418 55.304 0.147 -1.592 0.208 C11 E6Q 10
E6Q C12 C9 C 0 1 Y N N N N N 60.281 64.352 56.369 1.415 -2.142 0.277 C12 E6Q 11
E6Q C13 C10 C 0 1 Y N N N N N 62.116 64.406 57.942 2.388 0.067 0.004 C13 E6Q 12
E6Q C14 C11 C 0 1 Y N N N N N 60.749 64.351 57.677 2.536 -1.324 0.177 C14 E6Q 13
E6Q C15 C12 C 0 1 N N N N N N 62.329 64.359 59.392 3.771 0.601 -0.060 C15 E6Q 14
E6Q C1 C13 C 0 1 Y N N N N N 64.752 65.460 52.585 -3.058 -0.795 -0.848 C1 E6Q 15
E6Q C3 C14 C 0 1 Y N N N N N 64.834 65.518 51.209 -4.387 -1.165 -0.812 C3 E6Q 16
E6Q C2 C15 C 0 1 Y N N N N N 63.768 64.700 53.199 -2.606 0.250 -0.043 C2 E6Q 17
E6Q C16 C16 C 0 1 N N N N N N 60.007 64.296 58.960 3.988 -1.567 0.210 C16 E6Q 18
E6Q O1 O1 O 0 1 N N N N N N 63.388 64.365 60.017 4.082 1.767 -0.204 O1 E6Q 19
E6Q H1 H1 H 0 1 N N N N N N 62.077 63.428 52.858 -3.155 1.717 1.429 H1 E6Q 20
E6Q H2 H2 H 0 1 N N N N N N 63.995 64.896 49.352 -6.306 -0.804 0.056 H2 E6Q 21
E6Q H3 H3 H 0 1 N N N N N N 62.213 63.584 50.408 -5.517 1.033 1.488 H3 E6Q 22
E6Q H4 H4 H 0 1 N N N N N N 64.996 64.524 57.635 1.221 2.694 -0.324 H4 E6Q 23
E6Q H5 H5 H 0 1 N N N N N N 65.840 64.645 55.202 -1.318 2.806 -0.349 H5 E6Q 24
E6Q H6 H6 H 0 1 N N N N N N 60.789 64.416 54.291 -0.722 -2.230 0.279 H6 E6Q 25
E6Q H7 H7 H 0 1 N N N N N N 59.219 64.301 56.181 1.534 -3.207 0.410 H7 E6Q 26
E6Q H8 H8 H 0 1 N N N N N N 65.459 66.010 53.188 -2.371 -1.308 -1.504 H8 E6Q 27
E6Q H9 H9 H 0 1 N N N N N N 65.617 66.097 50.742 -4.739 -1.971 -1.439 H9 E6Q 28
E6Q H10 H10 H 0 1 N N N N N N 58.941 64.258 59.128 4.456 -2.533 0.331 H10 E6Q 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
E6Q C5 C6 DOUB Y N 1
E6Q C5 C3 SING Y N 2
E6Q C6 C4 SING Y N 3
E6Q C3 C1 DOUB Y N 4
E6Q C4 C2 DOUB Y N 5
E6Q C1 C2 SING Y N 6
E6Q C2 C7 SING N N 7
E6Q C7 C9 DOUB Y N 8
E6Q C7 C8 SING Y N 9
E6Q C11 C8 DOUB Y N 10
E6Q C11 C12 SING Y N 11
E6Q C9 N1 SING Y N 12
E6Q C8 C10 SING Y N 13
E6Q C12 C14 DOUB Y N 14
E6Q N1 C10 SING Y N 15
E6Q C10 C13 DOUB Y N 16
E6Q C14 C13 SING Y N 17
E6Q C14 C16 SING N N 18
E6Q C13 C15 SING N N 19
E6Q C16 N2 DOUB N N 20
E6Q C15 N2 SING N N 21
E6Q C15 O1 DOUB N N 22
E6Q C4 H1 SING N N 23
E6Q C5 H2 SING N N 24
E6Q C6 H3 SING N N 25
E6Q N1 H4 SING N N 26
E6Q C9 H5 SING N N 27
E6Q C11 H6 SING N N 28
E6Q C12 H7 SING N N 29
E6Q C1 H8 SING N N 30
E6Q C3 H9 SING N N 31
E6Q C16 H10 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
E6Q InChI InChI 1.03 InChI=1S/C16H10N2O/c19-16-14-11(8-18-16)6-7-12-13(9-17-15(12)14)10-4-2-1-3-5-10/h1-9,17H
E6Q InChIKey InChI 1.03 YJGNZVVUIPDSRL-UHFFFAOYSA-N
E6Q SMILES_CANONICAL CACTVS 3.385 O=C1N=Cc2ccc3c([nH]cc3c4ccccc4)c12
E6Q SMILES CACTVS 3.385 O=C1N=Cc2ccc3c([nH]cc3c4ccccc4)c12
E6Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)c2c[nH]c3c2ccc4c3C(=O)N=C4
E6Q SMILES "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)c2c[nH]c3c2ccc4c3C(=O)N=C4
#
_pdbx_chem_comp_identifier.comp_id E6Q
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier 3-phenyl-1~{H}-pyrrolo[3,4-g]indol-8-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
E6Q 'Create component' 2018-02-21 EBI
E6Q 'Initial release' 2018-05-16 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
E6Q C4 C 11.468 -1.483 1
E6Q C5 C 13.402 0.252 2
E6Q C6 C 12.936 -1.173 3
E6Q N1 N 6.908 -1.883 4
E6Q C7 C 8.998 -0.676 5
E6Q C8 C 7.893 0.325 6
E6Q N2 N 3.000 1.075 7
E6Q C9 C 8.391 -2.037 8
E6Q C10 C 6.594 -0.425 9
E6Q C11 C 7.893 1.825 10
E6Q C12 C 6.594 2.575 11
E6Q C13 C 5.295 0.325 12
E6Q C14 C 5.295 1.825 13
E6Q C15 C 3.875 -0.132 14
E6Q C1 C 10.932 1.060 15
E6Q C3 C 12.400 1.369 16
E6Q C2 C 10.466 -0.366 17
E6Q C16 C 3.875 2.282 18
E6Q O1 O 3.409 -1.558 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
E6Q C5 C6 SINGLE NONE 1
E6Q C5 C3 DOUBLE NONE 2
E6Q C6 C4 DOUBLE NONE 3
E6Q C3 C1 SINGLE NONE 4
E6Q C4 C2 SINGLE NONE 5
E6Q C1 C2 DOUBLE NONE 6
E6Q C2 C7 SINGLE NONE 7
E6Q C7 C9 DOUBLE NONE 8
E6Q C7 C8 SINGLE NONE 9
E6Q C11 C8 SINGLE NONE 10
E6Q C11 C12 DOUBLE NONE 11
E6Q C9 N1 SINGLE NONE 12
E6Q C8 C10 DOUBLE NONE 13
E6Q C12 C14 SINGLE NONE 14
E6Q N1 C10 SINGLE NONE 15
E6Q C10 C13 SINGLE NONE 16
E6Q C14 C13 DOUBLE NONE 17
E6Q C14 C16 SINGLE NONE 18
E6Q C13 C15 SINGLE NONE 19
E6Q C16 N2 DOUBLE NONE 20
E6Q C15 N2 SINGLE NONE 21
E6Q C15 O1 DOUBLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
E6Q MurckoScaffold S1 scaffold 'O=C1N=Cc2ccc3c(-c4ccccc4)c[nH]c3c21' InChI=1S/C16H10N2O/c19-16-14-11(8-18-16)6-7-12-13(9-17-15(12)14)10-4-2-1-3-5-10/h1-9,17H YJGNZVVUIPDSRL-UHFFFAOYSA-N
E6Q indole F1 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
E6Q phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
E6Q pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
E6Q C4 S1 1
E6Q C5 S1 1
E6Q C6 S1 1
E6Q N1 S1 1
E6Q C7 S1 1
E6Q C8 S1 1
E6Q N2 S1 1
E6Q C9 S1 1
E6Q C10 S1 1
E6Q C11 S1 1
E6Q C12 S1 1
E6Q C13 S1 1
E6Q C14 S1 1
E6Q C15 S1 1
E6Q C1 S1 1
E6Q C3 S1 1
E6Q C2 S1 1
E6Q C16 S1 1
E6Q O1 S1 1
E6Q C10 F1 1
E6Q C8 F1 1
E6Q C7 F1 1
E6Q C9 F1 1
E6Q N1 F1 1
E6Q C11 F1 1
E6Q C12 F1 1
E6Q C14 F1 1
E6Q C13 F1 1
E6Q C4 F2 1
E6Q C6 F2 1
E6Q C5 F2 1
E6Q C3 F2 1
E6Q C1 F2 1
E6Q C2 F2 1
E6Q C8 F2 2
E6Q C11 F2 2
E6Q C12 F2 2
E6Q C14 F2 2
E6Q C13 F2 2
E6Q C10 F2 2
E6Q C9 F3 1
E6Q C7 F3 1
E6Q C8 F3 1
E6Q C10 F3 1
E6Q N1 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id E6Q
_pdbe_chem_comp_rdkit_properties.exactmw 246.079
_pdbe_chem_comp_rdkit_properties.amw 246.269
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 123.268
_pdbe_chem_comp_rdkit_properties.tpsa 45.220
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.490
_pdbe_chem_comp_rdkit_properties.CrippenMR 71.599
_pdbe_chem_comp_rdkit_properties.chi0v 9.303
_pdbe_chem_comp_rdkit_properties.chi1v 5.349
_pdbe_chem_comp_rdkit_properties.chi2v 2.799
_pdbe_chem_comp_rdkit_properties.chi3v 2.799
_pdbe_chem_comp_rdkit_properties.chi4v 1.961
_pdbe_chem_comp_rdkit_properties.chi0n 19.303
_pdbe_chem_comp_rdkit_properties.chi1n 10.296
_pdbe_chem_comp_rdkit_properties.chi2n 2.799
_pdbe_chem_comp_rdkit_properties.chi3n 2.799
_pdbe_chem_comp_rdkit_properties.chi4n 1.961
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.680
_pdbe_chem_comp_rdkit_properties.kappa1 4.456
_pdbe_chem_comp_rdkit_properties.kappa2 3.654
_pdbe_chem_comp_rdkit_properties.kappa3 1.384
_pdbe_chem_comp_rdkit_properties.Phi 0.857
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
E6Q UniChem PDBe E6Q
E6Q UniChem PubChem 133084135
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
E6Q C4 -3.113 -0.442 0.680 ETKDGv3 1
E6Q C5 -4.463 1.494 0.061 ETKDGv3 2
E6Q C6 -4.273 0.219 0.781 ETKDGv3 3
E6Q N1 0.753 -2.356 -0.448 ETKDGv3 4
E6Q C7 -0.735 -0.640 -0.271 ETKDGv3 5
E6Q C8 0.620 -0.091 -0.390 ETKDGv3 6
E6Q N2 5.233 -0.980 -0.562 ETKDGv3 7
E6Q C9 -0.614 -1.971 -0.298 ETKDGv3 8
E6Q C10 1.446 -1.121 -0.494 ETKDGv3 9
E6Q C11 1.135 1.304 -0.267 ETKDGv3 10
E6Q C12 2.471 1.511 -0.304 ETKDGv3 11
E6Q C13 2.893 -0.891 -0.530 ETKDGv3 12
E6Q C14 3.370 0.337 -0.447 ETKDGv3 13
E6Q C15 4.042 -1.763 -0.603 ETKDGv3 14
E6Q C1 -2.196 1.261 -0.812 ETKDGv3 15
E6Q C3 -3.477 1.988 -0.695 ETKDGv3 16
E6Q C2 -2.008 0.103 -0.151 ETKDGv3 17
E6Q C16 4.833 0.255 -0.469 ETKDGv3 18
E6Q O1 4.020 -3.019 -0.687 ETKDGv3 19
E6Q H1 -2.983 -1.371 1.220 ETKDGv3 20
E6Q H2 -5.403 2.025 0.146 ETKDGv3 21
E6Q H3 -5.073 -0.178 1.392 ETKDGv3 22
E6Q H4 1.149 -3.322 -0.471 ETKDGv3 23
E6Q H5 -1.433 -2.676 -0.239 ETKDGv3 24
E6Q H6 0.461 2.137 -0.127 ETKDGv3 25
E6Q H7 2.879 2.509 -0.209 ETKDGv3 26
E6Q H8 -1.431 1.662 -1.463 ETKDGv3 27
E6Q H9 -3.617 2.920 -1.228 ETKDGv3 28
E6Q H10 5.512 1.095 -0.413 ETKDGv3 29
#