data_EB6
#
_chem_comp.id EB6
_chem_comp.name
"methyl (2~{S})-3-[4-[3-(4-methoxy-2-oxidanyl-phenyl)prop-2-ynoyloxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H27 N O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-12-06
_chem_comp.pdbx_modified_date 2020-02-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 549.570
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code EB6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6JF0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EB6 C4 C1 C 0 1 Y N N N N N 24.237 18.329 12.666 -4.298 -3.522 -1.663 C4 EB6 1
EB6 C2 C2 C 0 1 Y N N N N N 24.388 18.329 10.270 -6.436 -3.158 -2.681 C2 EB6 2
EB6 O4 O1 O 0 1 N N N N N N 15.998 16.198 10.538 2.920 1.018 -1.990 O4 EB6 3
EB6 C23 C3 C 0 1 N N N N N N 15.418 17.036 11.222 3.278 0.764 -0.856 C23 EB6 4
EB6 C24 C4 C 0 1 N N N N N N 15.253 18.194 10.777 4.656 0.479 -0.587 C24 EB6 5
EB6 C25 C5 C 0 1 N N N N N N 15.085 19.275 10.331 5.785 0.245 -0.367 C25 EB6 6
EB6 C26 C6 C 0 1 Y N N N N N 14.928 20.462 9.869 7.162 -0.040 -0.098 C26 EB6 7
EB6 C31 C7 C 0 1 Y N N N N N 15.873 21.013 8.869 8.104 -0.022 -1.141 C31 EB6 8
EB6 O6 O2 O 0 1 N N N N N N 16.922 20.267 8.427 7.712 0.261 -2.409 O6 EB6 9
EB6 C30 C8 C 0 1 Y N N N N N 15.677 22.305 8.394 9.433 -0.294 -0.868 C30 EB6 10
EB6 C29 C9 C 0 1 Y N N N N N 14.601 23.058 8.853 9.828 -0.582 0.431 C29 EB6 11
EB6 O5 O3 O 0 1 N N N N N N 14.424 24.329 8.376 11.132 -0.848 0.697 O5 EB6 12
EB6 C32 C10 C 0 1 N N N N N N 14.924 25.442 9.119 11.472 -1.136 2.055 C32 EB6 13
EB6 C28 C11 C 0 1 Y N N N N N 13.709 22.536 9.795 8.893 -0.599 1.462 C28 EB6 14
EB6 C27 C12 C 0 1 Y N N N N N 13.868 21.253 10.296 7.579 -0.333 1.207 C27 EB6 15
EB6 O3 O4 O 0 1 N N N N N N 14.930 16.693 12.554 2.378 0.751 0.150 O3 EB6 16
EB6 C20 C13 C 0 1 Y N N N N N 15.797 16.679 13.612 1.102 1.127 -0.131 C20 EB6 17
EB6 C19 C14 C 0 1 Y N N N N N 17.070 16.133 13.467 0.252 0.256 -0.798 C19 EB6 18
EB6 C18 C15 C 0 1 Y N N N N N 17.944 16.120 14.542 -1.044 0.641 -1.082 C18 EB6 19
EB6 C21 C16 C 0 1 Y N N N N N 15.409 17.223 14.835 0.647 2.380 0.253 C21 EB6 20
EB6 C22 C17 C 0 1 Y N N N N N 16.295 17.211 15.908 -0.650 2.760 -0.034 C22 EB6 21
EB6 C16 C18 C 0 1 Y N N N N N 17.559 16.659 15.766 -1.494 1.892 -0.703 C16 EB6 22
EB6 C15 C19 C 0 1 N N N N N N 18.522 16.654 16.932 -2.908 2.309 -1.015 C15 EB6 23
EB6 C13 C20 C 0 1 N N S N N N 19.207 18.014 17.040 -3.824 1.911 0.144 C13 EB6 24
EB6 C14 C21 C 0 1 N N N N N N 19.364 18.389 18.479 -5.214 2.435 -0.111 C14 EB6 25
EB6 O2 O5 O 0 1 N N N N N N 19.757 17.571 19.288 -6.143 1.668 -0.193 O2 EB6 26
EB6 O1 O6 O 0 1 N N N N N N 19.054 19.737 18.924 -5.419 3.755 -0.247 O1 EB6 27
EB6 C17 C22 C 0 1 N N N N N N 20.097 20.561 19.473 -6.783 4.188 -0.491 C17 EB6 28
EB6 N N1 N 0 1 N N N N N N 20.464 17.981 16.325 -3.866 0.450 0.253 N EB6 29
EB6 C12 C23 C 0 1 Y N N N N N 21.102 19.120 15.993 -4.170 -0.146 1.469 C12 EB6 30
EB6 C11 C24 C 0 1 Y N N N N N 20.948 20.271 16.753 -4.555 0.633 2.552 C11 EB6 31
EB6 C10 C25 C 0 1 Y N N N N N 21.547 21.452 16.355 -4.856 0.038 3.760 C10 EB6 32
EB6 C9 C26 C 0 1 Y N N N N N 22.278 21.521 15.192 -4.780 -1.339 3.903 C9 EB6 33
EB6 C8 C27 C 0 1 Y N N N N N 22.459 20.423 14.379 -4.402 -2.130 2.840 C8 EB6 34
EB6 C7 C28 C 0 1 Y N N N N N 21.885 19.204 14.732 -4.097 -1.543 1.608 C7 EB6 35
EB6 C6 C29 C 0 1 N N N N N N 22.059 18.003 13.853 -3.692 -2.382 0.468 C6 EB6 36
EB6 O O7 O 0 1 N N N N N N 21.522 16.951 14.157 -2.570 -2.851 0.426 O EB6 37
EB6 C5 C30 C 0 1 Y N N N N N 22.869 18.117 12.595 -4.647 -2.654 -0.627 C5 EB6 38
EB6 C C31 C 0 1 Y N N N N N 22.253 18.021 11.355 -5.903 -2.043 -0.629 C EB6 39
EB6 C3 C32 C 0 1 Y N N N N N 24.994 18.446 11.506 -5.193 -3.767 -2.684 C3 EB6 40
EB6 C1 C33 C 0 1 Y N N N N N 23.014 18.124 10.198 -6.790 -2.301 -1.654 C1 EB6 41
EB6 H1 H1 H 0 1 N N N N N N 24.718 18.404 13.630 -3.329 -3.998 -1.667 H1 EB6 42
EB6 H2 H2 H 0 1 N N N N N N 24.976 18.396 9.367 -7.132 -3.353 -3.483 H2 EB6 43
EB6 H3 H3 H 0 1 N N N N N N 16.907 19.417 8.850 7.745 1.202 -2.630 H3 EB6 44
EB6 H4 H4 H 0 1 N N N N N N 16.360 22.724 7.669 10.163 -0.282 -1.665 H4 EB6 45
EB6 H5 H5 H 0 1 N N N N N N 14.690 26.375 8.585 11.212 -0.284 2.683 H5 EB6 46
EB6 H6 H6 H 0 1 N N N N N N 14.453 25.461 10.113 10.920 -2.015 2.388 H6 EB6 47
EB6 H7 H7 H 0 1 N N N N N N 16.014 25.347 9.232 12.542 -1.330 2.128 H7 EB6 48
EB6 H8 H8 H 0 1 N N N N N N 12.883 23.142 10.138 9.210 -0.825 2.470 H8 EB6 49
EB6 H9 H9 H 0 1 N N N N N N 13.166 20.867 11.020 6.860 -0.344 2.013 H9 EB6 50
EB6 H10 H10 H 0 1 N N N N N N 17.376 15.720 12.517 0.603 -0.721 -1.094 H10 EB6 51
EB6 H11 H11 H 0 1 N N N N N N 18.928 15.690 14.430 -1.706 -0.036 -1.601 H11 EB6 52
EB6 H12 H12 H 0 1 N N N N N N 14.425 17.652 14.950 1.305 3.057 0.776 H12 EB6 53
EB6 H13 H13 H 0 1 N N N N N N 15.997 17.634 16.856 -1.005 3.735 0.265 H13 EB6 54
EB6 H14 H14 H 0 1 N N N N N N 17.970 16.448 17.861 -2.946 3.390 -1.153 H14 EB6 55
EB6 H15 H15 H 0 1 N N N N N N 19.281 15.874 16.776 -3.240 1.815 -1.928 H15 EB6 56
EB6 H16 H16 H 0 1 N N N N N N 18.550 18.757 16.564 -3.441 2.334 1.072 H16 EB6 57
EB6 H17 H17 H 0 1 N N N N N N 19.682 21.540 19.754 -7.147 3.739 -1.415 H17 EB6 58
EB6 H18 H18 H 0 1 N N N N N N 20.519 20.073 20.364 -7.417 3.878 0.339 H18 EB6 59
EB6 H19 H19 H 0 1 N N N N N N 20.888 20.700 18.722 -6.808 5.274 -0.581 H19 EB6 60
EB6 H20 H20 H 0 1 N N N N N N 20.292 17.491 15.470 -3.681 -0.100 -0.524 H20 EB6 61
EB6 H21 H21 H 0 1 N N N N N N 20.359 20.244 17.658 -4.617 1.706 2.450 H21 EB6 62
EB6 H22 H22 H 0 1 N N N N N N 21.439 22.335 16.968 -5.154 0.648 4.600 H22 EB6 63
EB6 H23 H23 H 0 1 N N N N N N 22.723 22.463 14.908 -5.017 -1.794 4.853 H23 EB6 64
EB6 H24 H24 H 0 1 N N N N N N 23.042 20.507 13.474 -4.348 -3.202 2.956 H24 EB6 65
EB6 H25 H25 H 0 1 N N N N N N 21.186 17.867 11.290 -6.180 -1.370 0.169 H25 EB6 66
EB6 H26 H26 H 0 1 N N N N N N 26.056 18.628 11.571 -4.923 -4.435 -3.488 H26 EB6 67
EB6 H27 H27 H 0 1 N N N N N N 22.535 18.044 9.233 -7.761 -1.829 -1.657 H27 EB6 68
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EB6 O5 C29 SING N N 1
EB6 O5 C32 SING N N 2
EB6 C30 C29 DOUB Y N 3
EB6 C30 C31 SING Y N 4
EB6 O6 C31 SING N N 5
EB6 C29 C28 SING Y N 6
EB6 C31 C26 DOUB Y N 7
EB6 C28 C27 DOUB Y N 8
EB6 C26 C27 SING Y N 9
EB6 C26 C25 SING N N 10
EB6 C1 C2 DOUB Y N 11
EB6 C1 C SING Y N 12
EB6 C2 C3 SING Y N 13
EB6 C25 C24 TRIP N N 14
EB6 O4 C23 DOUB N N 15
EB6 C24 C23 SING N N 16
EB6 C23 O3 SING N N 17
EB6 C C5 DOUB Y N 18
EB6 C3 C4 DOUB Y N 19
EB6 O3 C20 SING N N 20
EB6 C5 C4 SING Y N 21
EB6 C5 C6 SING N N 22
EB6 C19 C20 DOUB Y N 23
EB6 C19 C18 SING Y N 24
EB6 C20 C21 SING Y N 25
EB6 C6 O DOUB N N 26
EB6 C6 C7 SING N N 27
EB6 C8 C7 DOUB Y N 28
EB6 C8 C9 SING Y N 29
EB6 C18 C16 DOUB Y N 30
EB6 C7 C12 SING Y N 31
EB6 C21 C22 DOUB Y N 32
EB6 C9 C10 DOUB Y N 33
EB6 C16 C22 SING Y N 34
EB6 C16 C15 SING N N 35
EB6 C12 N SING N N 36
EB6 C12 C11 DOUB Y N 37
EB6 N C13 SING N N 38
EB6 C10 C11 SING Y N 39
EB6 C15 C13 SING N N 40
EB6 C13 C14 SING N N 41
EB6 C14 O1 SING N N 42
EB6 C14 O2 DOUB N N 43
EB6 O1 C17 SING N N 44
EB6 C4 H1 SING N N 45
EB6 C2 H2 SING N N 46
EB6 O6 H3 SING N N 47
EB6 C30 H4 SING N N 48
EB6 C32 H5 SING N N 49
EB6 C32 H6 SING N N 50
EB6 C32 H7 SING N N 51
EB6 C28 H8 SING N N 52
EB6 C27 H9 SING N N 53
EB6 C19 H10 SING N N 54
EB6 C18 H11 SING N N 55
EB6 C21 H12 SING N N 56
EB6 C22 H13 SING N N 57
EB6 C15 H14 SING N N 58
EB6 C15 H15 SING N N 59
EB6 C13 H16 SING N N 60
EB6 C17 H17 SING N N 61
EB6 C17 H18 SING N N 62
EB6 C17 H19 SING N N 63
EB6 N H20 SING N N 64
EB6 C11 H21 SING N N 65
EB6 C10 H22 SING N N 66
EB6 C9 H23 SING N N 67
EB6 C8 H24 SING N N 68
EB6 C H25 SING N N 69
EB6 C3 H26 SING N N 70
EB6 C1 H27 SING N N 71
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EB6 InChI InChI 1.03 InChI=1S/C33H27NO7/c1-39-26-18-14-23(30(35)21-26)15-19-31(36)41-25-16-12-22(13-17-25)20-29(33(38)40-2)34-28-11-7-6-10-27(28)32(37)24-8-4-3-5-9-24/h3-14,16-18,21,29,34-35H,20H2,1-2H3/t29-/m0/s1
EB6 InChIKey InChI 1.03 CEHNFAIQCQNZKE-LJAQVGFWSA-N
EB6 SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@H](Cc1ccc(OC(=O)C#Cc2ccc(OC)cc2O)cc1)Nc3ccccc3C(=O)c4ccccc4"
EB6 SMILES CACTVS 3.385 "COC(=O)[CH](Cc1ccc(OC(=O)C#Cc2ccc(OC)cc2O)cc1)Nc3ccccc3C(=O)c4ccccc4"
EB6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(c(c1)O)C#CC(=O)Oc2ccc(cc2)C[C@@H](C(=O)OC)Nc3ccccc3C(=O)c4ccccc4"
EB6 SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(c(c1)O)C#CC(=O)Oc2ccc(cc2)CC(C(=O)OC)Nc3ccccc3C(=O)c4ccccc4"
#
_pdbx_chem_comp_identifier.comp_id EB6
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"methyl (2~{S})-3-[4-[3-(4-methoxy-2-oxidanyl-phenyl)prop-2-ynoyloxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EB6 'Create component' 2019-12-06 PDBJ
EB6 'Initial release' 2020-02-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
EB6 C4 C 4.299 -5.625 1
EB6 C2 C 3.000 -7.875 2
EB6 O4 O 14.691 3.375 3
EB6 C23 C 15.990 2.625 4
EB6 C24 C 17.290 3.375 5
EB6 C25 C 18.588 4.125 6
EB6 C26 C 19.887 4.875 7
EB6 C31 C 21.187 4.125 8
EB6 O6 O 21.187 2.625 9
EB6 C30 C 22.486 4.875 10
EB6 C29 C 22.486 6.375 11
EB6 O5 O 23.785 7.125 12
EB6 C32 C 23.785 8.625 13
EB6 C28 C 21.187 7.125 14
EB6 C27 C 19.887 6.375 15
EB6 O3 O 15.990 1.125 16
EB6 C20 C 14.691 0.375 17
EB6 C19 C 13.392 1.125 18
EB6 C18 C 12.093 0.375 19
EB6 C21 C 14.691 -1.125 20
EB6 C22 C 13.392 -1.875 21
EB6 C16 C 12.093 -1.125 22
EB6 C15 C 10.794 -1.875 23
EB6 C13 C 10.794 -3.375 24
EB6 C14 C 12.093 -4.125 25
EB6 O2 O 12.093 -5.625 26
EB6 O1 O 13.392 -3.375 27
EB6 C17 C 14.691 -4.125 28
EB6 N N 9.495 -4.125 29
EB6 C12 C 9.495 -5.625 30
EB6 C11 C 10.794 -6.375 31
EB6 C10 C 10.794 -7.875 32
EB6 C9 C 9.495 -8.625 33
EB6 C8 C 8.196 -7.875 34
EB6 C7 C 8.196 -6.375 35
EB6 C6 C 6.897 -5.625 36
EB6 O O 6.897 -4.125 37
EB6 C5 C 5.598 -6.375 38
EB6 C C 5.598 -7.875 39
EB6 C3 C 3.000 -6.375 40
EB6 C1 C 4.299 -8.625 41
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
EB6 O5 C29 SINGLE NONE 1
EB6 O5 C32 SINGLE NONE 2
EB6 C30 C29 SINGLE NONE 3
EB6 C30 C31 DOUBLE NONE 4
EB6 O6 C31 SINGLE NONE 5
EB6 C29 C28 DOUBLE NONE 6
EB6 C31 C26 SINGLE NONE 7
EB6 C28 C27 SINGLE NONE 8
EB6 C26 C27 DOUBLE NONE 9
EB6 C26 C25 SINGLE NONE 10
EB6 C1 C2 DOUBLE NONE 11
EB6 C1 C SINGLE NONE 12
EB6 C2 C3 SINGLE NONE 13
EB6 C25 C24 TRIPLE NONE 14
EB6 O4 C23 DOUBLE NONE 15
EB6 C24 C23 SINGLE NONE 16
EB6 C23 O3 SINGLE NONE 17
EB6 C C5 DOUBLE NONE 18
EB6 C3 C4 DOUBLE NONE 19
EB6 O3 C20 SINGLE NONE 20
EB6 C5 C4 SINGLE NONE 21
EB6 C5 C6 SINGLE NONE 22
EB6 C19 C20 DOUBLE NONE 23
EB6 C19 C18 SINGLE NONE 24
EB6 C20 C21 SINGLE NONE 25
EB6 C6 O DOUBLE NONE 26
EB6 C6 C7 SINGLE NONE 27
EB6 C8 C7 DOUBLE NONE 28
EB6 C8 C9 SINGLE NONE 29
EB6 C18 C16 DOUBLE NONE 30
EB6 C7 C12 SINGLE NONE 31
EB6 C21 C22 DOUBLE NONE 32
EB6 C9 C10 DOUBLE NONE 33
EB6 C16 C22 SINGLE NONE 34
EB6 C16 C15 SINGLE NONE 35
EB6 C12 N SINGLE NONE 36
EB6 C12 C11 DOUBLE NONE 37
EB6 N C13 SINGLE NONE 38
EB6 C10 C11 SINGLE NONE 39
EB6 C13 C15 SINGLE BEGINWEDGE 40
EB6 C13 C14 SINGLE NONE 41
EB6 C14 O1 SINGLE NONE 42
EB6 C14 O2 DOUBLE NONE 43
EB6 O1 C17 SINGLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
EB6 MurckoScaffold S1 scaffold 'O=C(C#Cc1ccccc1)Oc1ccc(CCNc2ccccc2C(=O)c2ccccc2)cc1' InChI=1S/C30H23NO3/c32-29(20-17-23-9-3-1-4-10-23)34-26-18-15-24(16-19-26)21-22-31-28-14-8-7-13-27(28)30(33)25-11-5-2-6-12-25/h1-16,18-19,31H,21-22H2 BDXZNWDKWPNQIW-UHFFFAOYSA-N
EB6 peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
EB6 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
EB6 C4 S1 1
EB6 C2 S1 1
EB6 O4 S1 1
EB6 C23 S1 1
EB6 C24 S1 1
EB6 C25 S1 1
EB6 C26 S1 1
EB6 C31 S1 1
EB6 C30 S1 1
EB6 C29 S1 1
EB6 C28 S1 1
EB6 C27 S1 1
EB6 O3 S1 1
EB6 C20 S1 1
EB6 C19 S1 1
EB6 C18 S1 1
EB6 C21 S1 1
EB6 C22 S1 1
EB6 C16 S1 1
EB6 C15 S1 1
EB6 C13 S1 1
EB6 N S1 1
EB6 C12 S1 1
EB6 C11 S1 1
EB6 C10 S1 1
EB6 C9 S1 1
EB6 C8 S1 1
EB6 C7 S1 1
EB6 C6 S1 1
EB6 O S1 1
EB6 C5 S1 1
EB6 C S1 1
EB6 C3 S1 1
EB6 C1 S1 1
EB6 O2 F1 1
EB6 C14 F1 1
EB6 C13 F1 1
EB6 N F1 1
EB6 C4 F2 1
EB6 C3 F2 1
EB6 C2 F2 1
EB6 C1 F2 1
EB6 C F2 1
EB6 C5 F2 1
EB6 C26 F2 2
EB6 C31 F2 2
EB6 C30 F2 2
EB6 C29 F2 2
EB6 C28 F2 2
EB6 C27 F2 2
EB6 C20 F2 3
EB6 C19 F2 3
EB6 C18 F2 3
EB6 C16 F2 3
EB6 C22 F2 3
EB6 C21 F2 3
EB6 C12 F2 4
EB6 C7 F2 4
EB6 C8 F2 4
EB6 C9 F2 4
EB6 C10 F2 4
EB6 C11 F2 4
#
_pdbe_chem_comp_rdkit_properties.comp_id EB6
_pdbe_chem_comp_rdkit_properties.exactmw 549.179
_pdbe_chem_comp_rdkit_properties.amw 549.579
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 41
_pdbe_chem_comp_rdkit_properties.NumAtoms 68
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.121
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 275.135
_pdbe_chem_comp_rdkit_properties.tpsa 111.160
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.798
_pdbe_chem_comp_rdkit_properties.CrippenMR 149.343
_pdbe_chem_comp_rdkit_properties.chi0v 19.805
_pdbe_chem_comp_rdkit_properties.chi1v 10.488
_pdbe_chem_comp_rdkit_properties.chi2v 4.318
_pdbe_chem_comp_rdkit_properties.chi3v 4.318
_pdbe_chem_comp_rdkit_properties.chi4v 2.604
_pdbe_chem_comp_rdkit_properties.chi0n 46.805
_pdbe_chem_comp_rdkit_properties.chi1n 23.844
_pdbe_chem_comp_rdkit_properties.chi2n 4.318
_pdbe_chem_comp_rdkit_properties.chi3n 4.318
_pdbe_chem_comp_rdkit_properties.chi4n 2.604
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.550
_pdbe_chem_comp_rdkit_properties.kappa1 9.821
_pdbe_chem_comp_rdkit_properties.kappa2 13.492
_pdbe_chem_comp_rdkit_properties.kappa3 7.521
_pdbe_chem_comp_rdkit_properties.Phi 3.232
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
EB6 UniChem PDBe EB6
EB6 UniChem PubChem 145915876
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
EB6 C4 -8.720 0.391 0.038 ETKDGv3 1
EB6 C2 -10.459 0.073 1.719 ETKDGv3 2
EB6 O4 4.505 -2.158 -0.732 ETKDGv3 3
EB6 C23 4.673 -1.438 0.287 ETKDGv3 4
EB6 C24 6.004 -1.180 0.754 ETKDGv3 5
EB6 C25 7.123 -0.963 1.147 ETKDGv3 6
EB6 C26 8.460 -0.701 1.616 ETKDGv3 7
EB6 C31 9.295 0.326 0.948 ETKDGv3 8
EB6 O6 8.781 1.038 -0.137 ETKDGv3 9
EB6 C30 10.541 0.564 1.391 ETKDGv3 10
EB6 C29 11.087 -0.197 2.548 ETKDGv3 11
EB6 O5 12.381 0.021 3.041 ETKDGv3 12
EB6 C32 13.289 0.973 2.497 ETKDGv3 13
EB6 C28 10.321 -1.122 3.142 ETKDGv3 14
EB6 C27 8.951 -1.387 2.658 ETKDGv3 15
EB6 O3 3.586 -0.936 1.012 ETKDGv3 16
EB6 C20 2.265 -0.871 0.547 ETKDGv3 17
EB6 C19 1.268 -0.876 1.444 ETKDGv3 18
EB6 C18 -0.140 -0.809 1.003 ETKDGv3 19
EB6 C21 1.937 -0.754 -0.899 ETKDGv3 20
EB6 C22 0.661 -0.689 -1.299 ETKDGv3 21
EB6 C16 -0.440 -0.721 -0.305 ETKDGv3 22
EB6 C15 -1.877 -0.650 -0.761 ETKDGv3 23
EB6 C13 -2.533 0.719 -0.456 ETKDGv3 24
EB6 C14 -2.086 1.825 -1.380 ETKDGv3 25
EB6 O2 -0.877 1.915 -1.726 ETKDGv3 26
EB6 O1 -3.007 2.797 -1.789 ETKDGv3 27
EB6 C17 -2.657 3.866 -2.659 ETKDGv3 28
EB6 N -3.999 0.603 -0.456 ETKDGv3 29
EB6 C12 -4.794 -0.052 -1.469 ETKDGv3 30
EB6 C11 -4.433 -0.025 -2.768 ETKDGv3 31
EB6 C10 -5.296 -0.623 -3.804 ETKDGv3 32
EB6 C9 -6.454 -1.193 -3.465 ETKDGv3 33
EB6 C8 -6.864 -1.245 -2.050 ETKDGv3 34
EB6 C7 -6.087 -0.708 -1.091 ETKDGv3 35
EB6 C6 -6.476 -0.855 0.330 ETKDGv3 36
EB6 O -5.614 -1.270 1.153 ETKDGv3 37
EB6 C5 -7.849 -0.541 0.804 ETKDGv3 38
EB6 C -8.317 -1.074 1.950 ETKDGv3 39
EB6 C3 -9.954 0.677 0.471 ETKDGv3 40
EB6 C1 -9.680 -0.756 2.423 ETKDGv3 41
EB6 H1 -8.360 0.860 -0.869 ETKDGv3 42
EB6 H2 -11.458 0.306 2.065 ETKDGv3 43
EB6 H3 9.324 1.746 -0.617 ETKDGv3 44
EB6 H4 11.145 1.314 0.899 ETKDGv3 45
EB6 H5 13.507 0.729 1.436 ETKDGv3 46
EB6 H6 14.236 0.940 3.072 ETKDGv3 47
EB6 H7 12.861 1.995 2.574 ETKDGv3 48
EB6 H8 10.703 -1.685 3.985 ETKDGv3 49
EB6 H9 8.353 -2.141 3.157 ETKDGv3 50
EB6 H10 1.489 -0.944 2.501 ETKDGv3 51
EB6 H11 -0.926 -0.834 1.748 ETKDGv3 52
EB6 H12 2.721 -0.685 -1.640 ETKDGv3 53
EB6 H13 0.436 -0.596 -2.354 ETKDGv3 54
EB6 H14 -1.938 -0.874 -1.847 ETKDGv3 55
EB6 H15 -2.446 -1.452 -0.240 ETKDGv3 56
EB6 H16 -2.227 1.029 0.568 ETKDGv3 57
EB6 H17 -2.297 3.464 -3.629 ETKDGv3 58
EB6 H18 -3.552 4.495 -2.840 ETKDGv3 59
EB6 H19 -1.865 4.491 -2.194 ETKDGv3 60
EB6 H20 -4.490 0.952 0.398 ETKDGv3 61
EB6 H21 -3.524 0.459 -3.092 ETKDGv3 62
EB6 H22 -4.992 -0.589 -4.842 ETKDGv3 63
EB6 H23 -7.089 -1.628 -4.226 ETKDGv3 64
EB6 H24 -7.788 -1.752 -1.797 ETKDGv3 65
EB6 H25 -7.711 -1.752 2.538 ETKDGv3 66
EB6 H26 -10.582 1.358 -0.088 ETKDGv3 67
EB6 H27 -10.048 -1.198 3.341 ETKDGv3 68
#