data_EFE
#
_chem_comp.id EFE
_chem_comp.name "ENANTIO-PYOCHELIN FE(III)"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H14 Fe N2 O3 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 2
_chem_comp.pdbx_initial_date 2011-02-16
_chem_comp.pdbx_modified_date 2011-12-02
_chem_comp.pdbx_ambiguous_flag Y
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 378.248
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code EFE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3QLB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EFE C1 C1 C 0 1 Y N N N N N 61.830 -14.448 -12.898 2.469 1.018 0.366 C1 EFE 1
EFE N1 N1 N 1 1 N N S N N N 62.464 -16.570 -10.852 0.428 -0.822 -0.243 N1 EFE 2
EFE O1 O1 O 0 1 N N N N N N 60.756 -15.243 -12.690 1.296 1.685 0.740 O1 EFE 3
EFE S1 S1 S 0 1 N N N N N N 64.945 -15.910 -10.659 1.367 -3.041 -0.257 S1 EFE 4
EFE C2 C2 C 0 1 Y N N N N N 61.671 -13.383 -13.765 3.579 1.867 0.424 C2 EFE 5
EFE N2 N2 N 1 1 N N N N N N 60.864 -17.910 -9.881 -1.662 0.621 1.002 N2 EFE 6
EFE S2 S2 S 0 1 N N N N N N 62.367 -19.621 -8.423 -3.461 -1.229 0.417 S2 EFE 7
EFE C3 C3 C 0 1 Y N N N N N 62.724 -12.519 -13.994 4.847 1.429 0.130 C3 EFE 8
EFE FE3 FE3 FE 0 0 N N N N N N 60.555 -16.371 -11.125 -0.105 0.994 -0.034 FE3 EFE 9
EFE C4 C4 C 0 1 Y N N N N N 63.932 -12.727 -13.351 5.056 0.109 -0.233 C4 EFE 10
EFE C5 C5 C 0 1 Y N N N N N 64.090 -13.793 -12.475 3.985 -0.748 -0.310 C5 EFE 11
EFE C6 C6 C 0 1 Y N N N N N 63.042 -14.668 -12.240 2.680 -0.317 -0.031 C6 EFE 12
EFE C12 C12 C 0 1 N N N N N N 63.320 -15.726 -11.311 1.612 -1.319 -0.221 C12 EFE 13
EFE C13 C13 C 0 1 N N N N N N 64.537 -17.496 -9.903 -0.459 -2.995 -0.034 C13 EFE 14
EFE C14 C14 C 0 1 N N S N N N 63.065 -17.711 -10.254 -0.821 -1.513 -0.166 C14 EFE 15
EFE C15 C15 C 0 1 N N S N N N 62.093 -17.952 -9.101 -1.725 -0.890 0.900 C15 EFE 16
EFE C16 C16 C 0 1 N N N N N N 61.387 -20.365 -9.745 -3.977 0.508 0.157 C16 EFE 17
EFE C17 C17 C 0 1 N N S N N N 60.527 -19.266 -10.410 -2.638 1.252 0.070 C17 EFE 18
EFE C18 C18 C 0 1 N N N N N N 59.731 -17.378 -9.113 -1.660 1.151 2.372 C18 EFE 19
EFE C19 C19 C 0 1 N N N N N N 60.985 -19.190 -11.804 -2.128 1.351 -1.337 C19 EFE 20
EFE O20 O20 O 0 1 N N N N N N 61.502 -20.227 -12.463 -2.836 1.129 -2.289 O20 EFE 21
EFE O21 O21 O 0 1 N N N N N N 60.863 -17.876 -12.342 -0.805 1.710 -1.482 O21 EFE 22
EFE H2 H2 H 0 1 N N N N N N 60.725 -13.227 -14.262 3.434 2.899 0.708 H2 EFE 23
EFE H3 H3 H 0 1 N N N N N N 62.606 -11.686 -14.671 5.681 2.114 0.181 H3 EFE 24
EFE H4 H4 H 0 1 N N N N N N 64.758 -12.055 -13.532 6.052 -0.243 -0.454 H4 EFE 25
EFE H5 H5 H 0 1 N N N N N N 65.035 -13.941 -11.974 4.152 -1.777 -0.592 H5 EFE 26
EFE H13 H13 H 0 1 N N N N N N 65.165 -18.304 -10.306 -0.952 -3.578 -0.812 H13 EFE 27
EFE H13A H13A H 0 0 N N N N N N 64.688 -17.469 -8.814 -0.732 -3.367 0.953 H13A EFE 28
EFE H14 H14 H 0 1 N N N N N N 63.174 -18.600 -10.892 -1.320 -1.382 -1.126 H14 EFE 29
EFE H15 H15 H 0 1 N N N N N N 62.147 -17.269 -8.241 -1.513 -1.339 1.871 H15 EFE 30
EFE H16 H16 H 0 1 N N N N N N 62.056 -20.815 -10.493 -4.536 0.610 -0.773 H16 EFE 31
EFE H16A H16A H 0 0 N N N N N N 60.733 -21.145 -9.327 -4.563 0.867 1.003 H16A EFE 32
EFE H17 H17 H 0 1 N N N N N N 59.466 -19.507 -10.250 -2.809 2.270 0.418 H17 EFE 33
EFE H18 H18 H 0 1 N N N N N N 59.550 -18.017 -8.236 -1.567 2.237 2.341 H18 EFE 34
EFE H18A H18A H 0 0 N N N N N N 59.962 -16.355 -8.780 -2.592 0.880 2.867 H18A EFE 35
EFE H18B H18B H 0 0 N N N N N N 58.833 -17.364 -9.748 -0.820 0.730 2.923 H18B EFE 36
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EFE C1 O1 SING N N 1
EFE C1 C2 DOUB Y N 2
EFE C1 C6 SING Y N 3
EFE N1 FE3 SING N N 4
EFE N1 C12 DOUB N N 5
EFE N1 C14 SING N N 6
EFE O1 FE3 SING N N 7
EFE S1 C12 SING N N 8
EFE S1 C13 SING N N 9
EFE C2 C3 SING Y N 10
EFE N2 FE3 SING N N 11
EFE N2 C15 SING N N 12
EFE N2 C17 SING N N 13
EFE N2 C18 SING N N 14
EFE S2 C15 SING N N 15
EFE S2 C16 SING N N 16
EFE C3 C4 DOUB N N 17
EFE FE3 O21 SING Y N 18
EFE C4 C5 SING N N 19
EFE C5 C6 DOUB N N 20
EFE C6 C12 SING Y N 21
EFE C13 C14 SING N N 22
EFE C14 C15 SING Y N 23
EFE C16 C17 SING N N 24
EFE C17 C19 SING N N 25
EFE C19 O20 DOUB N N 26
EFE C19 O21 SING N N 27
EFE C2 H2 SING N N 28
EFE C3 H3 SING N N 29
EFE C4 H4 SING N N 30
EFE C5 H5 SING N N 31
EFE C13 H13 SING N N 32
EFE C13 H13A SING N N 33
EFE C14 H14 SING N N 34
EFE C15 H15 SING N N 35
EFE C16 H16 SING N N 36
EFE C16 H16A SING N N 37
EFE C17 H17 SING N N 38
EFE C18 H18 SING N N 39
EFE C18 H18A SING N N 40
EFE C18 H18B SING N N 41
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EFE SMILES ACDLabs 12.01 O=C4O[Fe]35Oc1c(cccc1)C=2SCC([N+]=23)C6SCC4[N+]56C
EFE InChI InChI 1.02 InChI=1S/C14H16N2O3S2.Fe/c1-16-10(14(18)19)7-21-13(16)9-6-20-12(15-9)8-4-2-3-5-11(8)17;/h2-5,9-10,13,17H,6-7H2,1H3,(H,18,19);/q;+4/p-2/t9-,10+,13-;/m0./s1
EFE InChIKey InChI 1.02 CWTAFCSYRCPPIK-XBIQSCFXSA-L
EFE SMILES_CANONICAL CACTVS 3.370 CN1|2[C@@H]3CS[C@H]1[C@@H]4CSC5=[N@@+]4[Fe]|2(OC3=O)Oc6ccccc56
EFE SMILES CACTVS 3.370 CN1|2[CH]3CS[CH]1[CH]4CSC5=[N+]4[Fe]|2(OC3=O)Oc6ccccc56
EFE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 C[N@+]12[C@@H]3CS[C@H]1[C@@H]4CSC5=[N+]4[Fe@]2(Oc6c5cccc6)OC3=O
EFE SMILES "OpenEye OEToolkits" 1.7.0 C[N+]12C3CSC1C4CSC5=[N+]4[Fe]2(Oc6c5cccc6)OC3=O
#
_pdbx_chem_comp_identifier.comp_id EFE
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier
"[(2S,3S,4S)-2-{(4S)-2-[2-(hydroxy-kappaO)phenyl]-4,5-dihydro-1,3-thiazol-4-yl-kappaN}-3-methyl-1,3-thiazolidine-4-carboxylato(2-)-kappa~2~N,O]iron(2+)"
#
_pdbx_chem_comp_audit.comp_id EFE
_pdbx_chem_comp_audit.action_type 'Create component'
_pdbx_chem_comp_audit.date 2011-02-16
_pdbx_chem_comp_audit.processing_site PDBJ
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
EFE C1 C 0.831 -1.889 1
EFE N1 N -1.123 0.028 2
EFE O1 O 1.193 -0.397 3
EFE S1 S -3.134 -1.158 4
EFE C2 C 1.951 -2.887 5
EFE N2 N 0.002 1.829 6
EFE S2 S -1.008 3.930 7
EFE C3 C 1.655 -4.343 8
EFE FE3 Fe 0.269 0.515 9
EFE C4 C 0.233 -4.808 10
EFE C5 C -0.898 -3.802 11
EFE C6 C -0.589 -2.330 12
EFE C12 C -1.604 -1.286 13
EFE C13 C -3.481 0.383 14
EFE C14 C -2.159 1.125 15
EFE C15 C -1.264 2.427 16
EFE C16 C 0.540 4.126 17
EFE C17 C 1.155 2.745 18
EFE C18 C -0.835 1.241 19
EFE C19 C 2.459 1.824 20
EFE O20 O 3.846 2.337 21
EFE O21 O 1.961 0.389 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
EFE C1 O1 SINGLE NONE 1
EFE C1 C2 SINGLE NONE 2
EFE C1 C6 DOUBLE NONE 3
EFE N1 FE3 SINGLE NONE 4
EFE N1 C12 DOUBLE NONE 5
EFE N1 C14 SINGLE NONE 6
EFE O1 FE3 SINGLE NONE 7
EFE S1 C12 SINGLE NONE 8
EFE S1 C13 SINGLE NONE 9
EFE C2 C3 DOUBLE NONE 10
EFE N2 FE3 SINGLE NONE 11
EFE N2 C15 SINGLE NONE 12
EFE N2 C17 SINGLE NONE 13
EFE N2 C18 SINGLE BEGINWEDGE 14
EFE S2 C15 SINGLE NONE 15
EFE S2 C16 SINGLE NONE 16
EFE C3 C4 SINGLE NONE 17
EFE FE3 O21 SINGLE NONE 18
EFE C4 C5 DOUBLE NONE 19
EFE C5 C6 SINGLE NONE 20
EFE C6 C12 SINGLE NONE 21
EFE C13 C14 SINGLE NONE 22
EFE C14 C15 SINGLE NONE 23
EFE C16 C17 SINGLE NONE 24
EFE C17 C19 SINGLE NONE 25
EFE C19 O20 DOUBLE NONE 26
EFE C19 O21 SINGLE NONE 27
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
EFE MurckoScaffold S1 scaffold 'O=C1O[Fe@OH15]23Oc4ccccc4C4=[N+]2[C@@H](CS4)[C@@H]2SC[C@H]1[NH+]23' 'InChI=1S/C13H14N2O3S2.Fe/c16-10-4-2-1-3-7(10)11-14-8(5-19-11)12-15-9(6-20-12)13(17)18;/h1-4,8-9,12,15-16H,5-6H2,(H,17,18);/q;+4/p-2/t8-,9+,12-;/m0./s1' BSOCGJPRTZXQGD-YFSJIIRSSA-L
EFE peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
EFE phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
EFE C1 S1 1
EFE N1 S1 1
EFE O1 S1 1
EFE S1 S1 1
EFE C2 S1 1
EFE N2 S1 1
EFE S2 S1 1
EFE C3 S1 1
EFE FE3 S1 1
EFE C4 S1 1
EFE C5 S1 1
EFE C6 S1 1
EFE C12 S1 1
EFE C13 S1 1
EFE C14 S1 1
EFE C15 S1 1
EFE C16 S1 1
EFE C17 S1 1
EFE C19 S1 1
EFE O20 S1 1
EFE O21 S1 1
EFE O20 F1 1
EFE C19 F1 1
EFE C17 F1 1
EFE N2 F1 1
EFE C1 F2 1
EFE C2 F2 1
EFE C3 F2 1
EFE C4 F2 1
EFE C5 F2 1
EFE C6 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id EFE
_pdbe_chem_comp_rdkit_properties.exactmw 377.978
_pdbe_chem_comp_rdkit_properties.amw 378.256
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 36
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.429
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 5
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 158.752
_pdbe_chem_comp_rdkit_properties.tpsa 38.540
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.709
_pdbe_chem_comp_rdkit_properties.CrippenMR 79.120
_pdbe_chem_comp_rdkit_properties.chi0v 13.026
_pdbe_chem_comp_rdkit_properties.chi1v 9.424
_pdbe_chem_comp_rdkit_properties.chi2v 9.220
_pdbe_chem_comp_rdkit_properties.chi3v 9.220
_pdbe_chem_comp_rdkit_properties.chi4v 9.031
_pdbe_chem_comp_rdkit_properties.chi0n 24.289
_pdbe_chem_comp_rdkit_properties.chi1n 12.902
_pdbe_chem_comp_rdkit_properties.chi2n 3.519
_pdbe_chem_comp_rdkit_properties.chi3n 3.519
_pdbe_chem_comp_rdkit_properties.chi4n 2.609
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.661
_pdbe_chem_comp_rdkit_properties.kappa1 5.425
_pdbe_chem_comp_rdkit_properties.kappa2 3.701
_pdbe_chem_comp_rdkit_properties.kappa3 1.087
_pdbe_chem_comp_rdkit_properties.Phi 0.913
#
_pdbe_chem_comp_external_mappings.comp_id EFE
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id EFE
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
EFE C1 2.663 0.492 1.089 ETKDGv3 1
EFE N1 0.248 0.095 -0.562 ETKDGv3 2
EFE O1 1.502 0.809 1.793 ETKDGv3 3
EFE S1 1.468 -0.427 -2.787 ETKDGv3 4
EFE C2 3.943 0.651 1.816 ETKDGv3 5
EFE N2 -2.064 -0.401 0.724 ETKDGv3 6
EFE S2 -3.540 -0.834 -1.471 ETKDGv3 7
EFE C3 5.104 0.352 1.229 ETKDGv3 8
EFE FE3 -0.250 0.194 1.310 ETKDGv3 9
EFE C4 5.119 -0.139 -0.156 ETKDGv3 10
EFE C5 3.974 -0.275 -0.833 ETKDGv3 11
EFE C6 2.663 0.063 -0.202 ETKDGv3 12
EFE C12 1.436 -0.015 -1.043 ETKDGv3 13
EFE C13 -0.260 -0.985 -2.621 ETKDGv3 14
EFE C14 -0.850 -0.198 -1.447 ETKDGv3 15
EFE C15 -1.934 -0.961 -0.642 ETKDGv3 16
EFE C16 -3.849 0.719 -0.593 ETKDGv3 17
EFE C17 -2.994 0.761 0.689 ETKDGv3 18
EFE C18 -2.514 -1.425 1.682 ETKDGv3 19
EFE C19 -2.216 2.049 0.788 ETKDGv3 20
EFE O20 -2.783 3.167 0.670 ETKDGv3 21
EFE O21 -0.864 1.980 1.068 ETKDGv3 22
EFE H2 3.937 1.009 2.838 ETKDGv3 23
EFE H3 6.034 0.467 1.771 ETKDGv3 24
EFE H4 6.062 -0.388 -0.627 ETKDGv3 25
EFE H5 4.023 -0.639 -1.849 ETKDGv3 26
EFE H13 -0.824 -0.786 -3.556 ETKDGv3 27
EFE H13A -0.253 -2.078 -2.420 ETKDGv3 28
EFE H14 -1.250 0.768 -1.825 ETKDGv3 29
EFE H15 -1.648 -2.036 -0.597 ETKDGv3 30
EFE H16 -4.929 0.782 -0.341 ETKDGv3 31
EFE H16A -3.606 1.554 -1.286 ETKDGv3 32
EFE H17 -3.684 0.749 1.564 ETKDGv3 33
EFE H18 -1.782 -2.260 1.721 ETKDGv3 34
EFE H18A -3.514 -1.825 1.401 ETKDGv3 35
EFE H18B -2.567 -0.992 2.704 ETKDGv3 36
#