data_EGP
#
_chem_comp.id EGP
_chem_comp.name
"N-[2-(1H-indol-3-yl)ethyl]-N'-{3-[(4-methylpiperazin-1-yl)methyl]-1-[2-(morpholin-4-yl)-2-oxoethyl]-1H-indol-6-yl}thiourea"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H39 N7 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-01-10
_chem_comp.pdbx_modified_date 2019-01-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 573.752
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code EGP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6C3L
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EGP N N1 N 0 1 Y N N N N N -20.717 3.700 2.166 -3.349 1.174 0.012 N EGP 1
EGP CA C1 C 0 1 N N N N N N -21.715 4.494 1.442 -3.421 2.554 0.500 CA EGP 2
EGP C C2 C 0 1 N N N N N N -20.986 5.789 1.050 -2.751 3.471 -0.490 C EGP 3
EGP O O1 O 0 1 N N N N N N -19.960 6.130 1.639 -2.261 3.017 -1.503 O EGP 4
EGP CAA C3 C 0 1 N N N N N N -14.801 6.521 6.434 -8.206 -5.044 1.234 CAA EGP 5
EGP CAD C4 C 0 1 Y N N N N N -12.018 -1.378 1.721 9.688 0.163 -1.914 CAD EGP 6
EGP CAE C5 C 0 1 Y N N N N N -11.831 -1.176 0.362 8.619 0.989 -1.595 CAE EGP 7
EGP CAF C6 C 0 1 Y N N N N N -18.143 0.801 1.090 -0.512 -1.820 0.253 CAF EGP 8
EGP CAG C7 C 0 1 Y N N N N N -12.927 -0.565 2.389 9.846 -1.054 -1.287 CAG EGP 9
EGP CAH C8 C 0 1 Y N N N N N -12.563 -0.172 -0.265 7.704 0.609 -0.654 CAH EGP 10
EGP CAI C9 C 0 1 Y N N N N N -18.252 1.330 2.374 -1.712 -1.964 -0.382 CAI EGP 11
EGP CAJ C10 C 0 1 Y N N N N N -14.892 2.017 1.132 7.709 -2.482 1.263 CAJ EGP 12
EGP CAK C11 C 0 1 Y N N N N N -19.874 2.283 0.383 -1.056 0.455 0.840 CAK EGP 13
EGP CAL C12 C 0 1 Y N N N N N -20.417 3.841 3.457 -4.331 0.539 -0.702 CAL EGP 14
EGP CAM C13 C 0 1 N N N N N N -15.398 1.429 -2.232 4.607 -1.189 0.831 CAM EGP 15
EGP CAN C14 C 0 1 N N N N N N -20.872 7.877 -1.880 -1.055 6.590 -0.428 CAN EGP 16
EGP CAO C15 C 0 1 N N N N N N -22.645 6.363 -2.163 -2.231 6.265 1.638 CAO EGP 17
EGP CAP C16 C 0 1 N N N N N N -14.347 2.158 -1.365 5.819 -0.832 1.694 CAP EGP 18
EGP CAQ C17 C 0 1 N N N N N N -20.821 7.731 -0.381 -2.046 5.712 -1.202 CAQ EGP 19
EGP CAR C18 C 0 1 N N N N N N -22.721 6.043 -0.675 -3.282 5.370 0.971 CAR EGP 20
EGP CAS C19 C 0 1 N N N N N N -16.526 4.970 7.122 -6.982 -2.967 1.006 CAS EGP 21
EGP CAT C20 C 0 1 N N N N N N -16.302 5.579 4.812 -6.551 -4.799 -0.517 CAT EGP 22
EGP CAU C21 C 0 1 N N N N N N -17.335 3.743 6.728 -6.397 -1.984 -0.011 CAU EGP 23
EGP CAV C22 C 0 1 N N N N N N -17.099 4.355 4.416 -5.966 -3.815 -1.534 CAV EGP 24
EGP CAX C23 C 0 1 N N N N N N -18.796 2.774 5.074 -4.742 -1.738 -1.762 CAX EGP 25
EGP CBC C24 C 0 1 N N N N N N -17.790 0.790 -1.936 2.187 -0.916 0.901 CBC EGP 26
EGP CBE C25 C 0 1 Y N N N N N -18.954 1.290 0.065 -0.173 -0.610 0.857 CBE EGP 27
EGP CBF C26 C 0 1 Y N N N N N -14.226 1.577 0.066 7.076 -1.323 1.022 CBF EGP 28
EGP CBG C27 C 0 1 Y N N N N N -19.452 2.967 3.709 -3.948 -0.714 -0.991 CBG EGP 29
EGP CBH C28 C 0 1 Y N N N N N -13.601 0.388 1.740 8.930 -1.458 -0.322 CBH EGP 30
EGP CBI C29 C 0 1 Y N N N N N -13.419 0.581 0.429 7.846 -0.620 -0.006 CBI EGP 31
EGP CBJ C30 C 0 1 Y N N N N N -19.142 2.292 2.604 -2.613 -0.898 -0.415 CBJ EGP 32
EGP CBK C31 C 0 1 Y N N N N N -19.935 2.761 1.634 -2.283 0.323 0.199 CBK EGP 33
EGP NAY N2 N 0 1 N N N N N N -16.667 1.377 -1.493 3.385 -0.712 1.483 NAY EGP 34
EGP NAZ N3 N 0 1 N N N N N N -18.902 0.774 -1.179 1.063 -0.478 1.502 NAZ EGP 35
EGP NBA N4 N 0 1 Y N N N N N -14.507 1.274 2.170 8.814 -2.584 0.462 NBA EGP 36
EGP NBL N5 N 0 1 N N N N N N -15.570 5.324 6.060 -7.566 -4.113 0.295 NBL EGP 37
EGP NBM N6 N 0 1 N N N N N N -18.062 3.991 5.471 -5.382 -2.669 -0.823 NBM EGP 38
EGP NBN N7 N 0 1 N N N N N N -21.498 6.487 0.031 -2.695 4.796 -0.250 NBN EGP 39
EGP OBB O2 O 0 1 N N N N N N -22.224 7.721 -2.349 -1.728 7.196 0.678 OBB EGP 40
EGP SAC S1 S 0 1 N N N N N N -17.841 0.024 -3.500 2.092 -1.733 -0.601 SAC EGP 41
EGP H1 H1 H 0 1 N N N N N N -22.576 4.716 2.090 -4.465 2.845 0.615 H1 EGP 42
EGP H2 H2 H 0 1 N N N N N N -22.059 3.958 0.545 -2.915 2.626 1.462 H2 EGP 43
EGP H3 H3 H 0 1 N N N N N N -14.254 6.329 7.368 -7.452 -5.464 1.900 H3 EGP 44
EGP H4 H4 H 0 1 N N N N N N -14.086 6.762 5.633 -8.953 -4.510 1.822 H4 EGP 45
EGP H5 H5 H 0 1 N N N N N N -15.488 7.368 6.579 -8.689 -5.847 0.678 H5 EGP 46
EGP H6 H6 H 0 1 N N N N N N -11.472 -2.147 2.247 10.400 0.475 -2.663 H6 EGP 47
EGP H7 H7 H 0 1 N N N N N N -11.134 -1.783 -0.197 8.509 1.940 -2.095 H7 EGP 48
EGP H8 H8 H 0 1 N N N N N N -17.432 0.014 0.888 0.185 -2.645 0.277 H8 EGP 49
EGP H9 H9 H 0 1 N N N N N N -13.090 -0.706 3.447 10.679 -1.692 -1.546 H9 EGP 50
EGP H10 H10 H 0 1 N N N N N N -12.437 -0.000 -1.324 6.876 1.258 -0.411 H10 EGP 51
EGP H11 H11 H 0 1 N N N N N N -17.623 0.964 3.172 -1.963 -2.901 -0.858 H11 EGP 52
EGP H12 H12 H 0 1 N N N N N N -15.609 2.824 1.152 7.388 -3.228 1.974 H12 EGP 53
EGP H13 H13 H 0 1 N N N N N N -20.538 2.668 -0.376 -0.793 1.385 1.322 H13 EGP 54
EGP H14 H14 H 0 1 N N N N N N -20.869 4.528 4.157 -5.273 0.982 -0.989 H14 EGP 55
EGP H15 H15 H 0 1 N N N N N N -15.054 0.407 -2.449 4.705 -0.717 -0.147 H15 EGP 56
EGP H16 H16 H 0 1 N N N N N N -15.542 1.975 -3.176 4.555 -2.271 0.708 H16 EGP 57
EGP H17 H17 H 0 1 N N N N N N -20.236 7.107 -2.342 -0.233 5.975 -0.062 H17 EGP 58
EGP H18 H18 H 0 1 N N N N N N -20.503 8.874 -2.161 -0.664 7.365 -1.087 H18 EGP 59
EGP H19 H19 H 0 1 N N N N N N -23.637 6.223 -2.617 -2.688 6.807 2.467 H19 EGP 60
EGP H20 H20 H 0 1 N N N N N N -21.923 5.688 -2.645 -1.414 5.649 2.013 H20 EGP 61
EGP H21 H21 H 0 1 N N N N N N -13.368 2.075 -1.860 5.871 0.249 1.817 H21 EGP 62
EGP H22 H22 H 0 1 N N N N N N -14.631 3.218 -1.289 5.721 -1.305 2.671 H22 EGP 63
EGP H23 H23 H 0 1 N N N N N N -19.771 7.699 -0.054 -2.798 6.340 -1.679 H23 EGP 64
EGP H24 H24 H 0 1 N N N N N N -21.324 8.591 0.086 -1.513 5.137 -1.959 H24 EGP 65
EGP H25 H25 H 0 1 N N N N N N -23.592 6.556 -0.242 -3.568 4.569 1.652 H25 EGP 66
EGP H26 H26 H 0 1 N N N N N N -22.835 4.956 -0.547 -4.159 5.964 0.713 H26 EGP 67
EGP H27 H27 H 0 1 N N N N N N -15.974 4.756 8.049 -6.192 -3.316 1.671 H27 EGP 68
EGP H28 H28 H 0 1 N N N N N N -17.210 5.815 7.289 -7.756 -2.468 1.590 H28 EGP 69
EGP H29 H29 H 0 1 N N N N N N -15.586 5.821 4.013 -7.011 -5.635 -1.043 H29 EGP 70
EGP H30 H30 H 0 1 N N N N N N -16.987 6.427 4.959 -5.757 -5.169 0.131 H30 EGP 71
EGP H31 H31 H 0 1 N N N N N N -18.057 3.513 7.525 -7.192 -1.614 -0.659 H31 EGP 72
EGP H32 H32 H 0 1 N N N N N N -16.655 2.889 6.592 -5.938 -1.147 0.515 H32 EGP 73
EGP H33 H33 H 0 1 N N N N N N -17.647 4.567 3.486 -5.192 -4.313 -2.118 H33 EGP 74
EGP H34 H34 H 0 1 N N N N N N -16.410 3.514 4.252 -6.756 -3.466 -2.199 H34 EGP 75
EGP H35 H35 H 0 1 N N N N N N -19.573 2.560 5.822 -5.507 -1.235 -2.353 H35 EGP 76
EGP H36 H36 H 0 1 N N N N N N -18.094 1.929 5.022 -4.075 -2.290 -2.424 H36 EGP 77
EGP H37 H37 H 0 1 N N N N N N -16.696 1.811 -0.593 3.439 -0.250 2.334 H37 EGP 78
EGP H38 H38 H 0 1 N N N N N N -19.730 0.359 -1.557 1.110 -0.070 2.381 H38 EGP 79
EGP H39 H39 H 0 1 N N N N N N -14.839 1.364 3.109 9.431 -3.333 0.457 H39 EGP 80
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EGP SAC CBC DOUB N N 1
EGP OBB CAO SING N N 2
EGP OBB CAN SING N N 3
EGP CAM NAY SING N N 4
EGP CAM CAP SING N N 5
EGP CAO CAR SING N N 6
EGP CBC NAY SING N N 7
EGP CBC NAZ SING N N 8
EGP CAN CAQ SING N N 9
EGP CAP CBF SING N N 10
EGP NAZ CBE SING N N 11
EGP CAR NBN SING N N 12
EGP CAQ NBN SING N N 13
EGP CAH CAE DOUB Y N 14
EGP CAH CBI SING Y N 15
EGP NBN C SING N N 16
EGP CBE CAK DOUB Y N 17
EGP CBE CAF SING Y N 18
EGP CBF CBI SING Y N 19
EGP CBF CAJ DOUB Y N 20
EGP CAE CAD SING Y N 21
EGP CAK CBK SING Y N 22
EGP CBI CBH DOUB Y N 23
EGP C CA SING N N 24
EGP C O DOUB N N 25
EGP CAF CAI DOUB Y N 26
EGP CAJ NBA SING Y N 27
EGP CA N SING N N 28
EGP CBK N SING Y N 29
EGP CBK CBJ DOUB Y N 30
EGP CAD CAG DOUB Y N 31
EGP CBH NBA SING Y N 32
EGP CBH CAG SING Y N 33
EGP N CAL SING Y N 34
EGP CAI CBJ SING Y N 35
EGP CBJ CBG SING Y N 36
EGP CAL CBG DOUB Y N 37
EGP CBG CAX SING N N 38
EGP CAV CAT SING N N 39
EGP CAV NBM SING N N 40
EGP CAT NBL SING N N 41
EGP CAX NBM SING N N 42
EGP NBM CAU SING N N 43
EGP NBL CAA SING N N 44
EGP NBL CAS SING N N 45
EGP CAU CAS SING N N 46
EGP CA H1 SING N N 47
EGP CA H2 SING N N 48
EGP CAA H3 SING N N 49
EGP CAA H4 SING N N 50
EGP CAA H5 SING N N 51
EGP CAD H6 SING N N 52
EGP CAE H7 SING N N 53
EGP CAF H8 SING N N 54
EGP CAG H9 SING N N 55
EGP CAH H10 SING N N 56
EGP CAI H11 SING N N 57
EGP CAJ H12 SING N N 58
EGP CAK H13 SING N N 59
EGP CAL H14 SING N N 60
EGP CAM H15 SING N N 61
EGP CAM H16 SING N N 62
EGP CAN H17 SING N N 63
EGP CAN H18 SING N N 64
EGP CAO H19 SING N N 65
EGP CAO H20 SING N N 66
EGP CAP H21 SING N N 67
EGP CAP H22 SING N N 68
EGP CAQ H23 SING N N 69
EGP CAQ H24 SING N N 70
EGP CAR H25 SING N N 71
EGP CAR H26 SING N N 72
EGP CAS H27 SING N N 73
EGP CAS H28 SING N N 74
EGP CAT H29 SING N N 75
EGP CAT H30 SING N N 76
EGP CAU H31 SING N N 77
EGP CAU H32 SING N N 78
EGP CAV H33 SING N N 79
EGP CAV H34 SING N N 80
EGP CAX H35 SING N N 81
EGP CAX H36 SING N N 82
EGP NAY H37 SING N N 83
EGP NAZ H38 SING N N 84
EGP NBA H39 SING N N 85
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EGP SMILES ACDLabs 12.01 n2(cc(CN1CCN(C)CC1)c3ccc(cc23)NC(NCCc4cnc5ccccc45)=S)CC(=O)N6CCOCC6
EGP InChI InChI 1.03 InChI=1S/C31H39N7O2S/c1-35-10-12-36(13-11-35)20-24-21-38(22-30(39)37-14-16-40-17-15-37)29-18-25(6-7-27(24)29)34-31(41)32-9-8-23-19-33-28-5-3-2-4-26(23)28/h2-7,18-19,21,33H,8-17,20,22H2,1H3,(H2,32,34,41)
EGP InChIKey InChI 1.03 KSDJEFBPBCSCLA-UHFFFAOYSA-N
EGP SMILES_CANONICAL CACTVS 3.385 CN1CCN(CC1)Cc2cn(CC(=O)N3CCOCC3)c4cc(NC(=S)NCCc5c[nH]c6ccccc56)ccc24
EGP SMILES CACTVS 3.385 CN1CCN(CC1)Cc2cn(CC(=O)N3CCOCC3)c4cc(NC(=S)NCCc5c[nH]c6ccccc56)ccc24
EGP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CN1CCN(CC1)Cc2cn(c3c2ccc(c3)NC(=S)NCCc4c[nH]c5c4cccc5)CC(=O)N6CCOCC6
EGP SMILES "OpenEye OEToolkits" 2.0.6 CN1CCN(CC1)Cc2cn(c3c2ccc(c3)NC(=S)NCCc4c[nH]c5c4cccc5)CC(=O)N6CCOCC6
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
EGP "SYSTEMATIC NAME" ACDLabs 12.01 "N-[2-(1H-indol-3-yl)ethyl]-N'-{3-[(4-methylpiperazin-1-yl)methyl]-1-[2-(morpholin-4-yl)-2-oxoethyl]-1H-indol-6-yl}thiourea"
EGP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 1-[2-(1~{H}-indol-3-yl)ethyl]-3-[3-[(4-methylpiperazin-1-yl)methyl]-1-(2-morpholin-4-yl-2-oxidanylidene-ethyl)indol-6-yl]thiourea
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EGP 'Create component' 2018-01-10 RCSB
EGP 'Initial release' 2019-01-16 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
EGP N N 19.109 0.064 1
EGP CA C 19.575 -1.362 2
EGP C C 21.043 -1.671 3
EGP O O 22.044 -0.555 4
EGP CAA C 25.446 5.141 5
EGP CAD C 3.000 -0.705 6
EGP CAE C 4.002 -1.822 7
EGP CAF C 15.091 2.021 8
EGP CAG C 3.466 0.721 9
EGP CAH C 5.470 -1.512 10
EGP CAI C 16.390 2.771 11
EGP CAJ C 7.143 2.004 12
EGP CAK C 16.390 -0.229 13
EGP CAL C 19.984 1.271 14
EGP CAM C 9.895 0.521 15
EGP CAN C 20.973 -5.639 16
EGP CAO C 23.442 -4.832 17
EGP CAP C 8.596 -0.229 18
EGP CAQ C 20.507 -4.213 19
EGP CAR C 22.976 -3.406 20
EGP CAS C 22.976 5.948 21
EGP CAT C 23.512 3.406 22
EGP CAU C 21.509 5.639 23
EGP CAV C 22.044 3.097 24
EGP CAX C 19.575 3.904 25
EGP CBC C 12.493 0.521 26
EGP CBE C 15.091 0.521 27
EGP CBF C 7.297 0.521 28
EGP CBG C 19.109 2.478 29
EGP CBH C 4.934 1.030 30
EGP CBI C 5.936 -0.087 31
EGP CBJ C 17.689 2.021 32
EGP CBK C 17.689 0.521 33
EGP NAY N 11.194 -0.229 34
EGP NAZ N 13.792 -0.229 35
EGP NBA N 5.685 2.318 36
EGP NBL N 23.978 4.832 37
EGP NBM N 21.043 4.213 38
EGP NBN N 21.509 -3.097 39
EGP OBB O 22.441 -5.948 40
EGP SAC S 12.493 2.021 41
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
EGP SAC CBC DOUBLE NONE 1
EGP OBB CAO SINGLE NONE 2
EGP OBB CAN SINGLE NONE 3
EGP CAM NAY SINGLE NONE 4
EGP CAM CAP SINGLE NONE 5
EGP CAO CAR SINGLE NONE 6
EGP CBC NAY SINGLE NONE 7
EGP CBC NAZ SINGLE NONE 8
EGP CAN CAQ SINGLE NONE 9
EGP CAP CBF SINGLE NONE 10
EGP NAZ CBE SINGLE NONE 11
EGP CAR NBN SINGLE NONE 12
EGP CAQ NBN SINGLE NONE 13
EGP CAH CAE SINGLE NONE 14
EGP CAH CBI DOUBLE NONE 15
EGP NBN C SINGLE NONE 16
EGP CBE CAK SINGLE NONE 17
EGP CBE CAF DOUBLE NONE 18
EGP CBF CBI SINGLE NONE 19
EGP CBF CAJ DOUBLE NONE 20
EGP CAE CAD DOUBLE NONE 21
EGP CAK CBK DOUBLE NONE 22
EGP CBI CBH SINGLE NONE 23
EGP C CA SINGLE NONE 24
EGP C O DOUBLE NONE 25
EGP CAF CAI SINGLE NONE 26
EGP CAJ NBA SINGLE NONE 27
EGP CA N SINGLE NONE 28
EGP CBK N SINGLE NONE 29
EGP CBK CBJ SINGLE NONE 30
EGP CAD CAG SINGLE NONE 31
EGP CBH NBA SINGLE NONE 32
EGP CBH CAG DOUBLE NONE 33
EGP N CAL SINGLE NONE 34
EGP CAI CBJ DOUBLE NONE 35
EGP CBJ CBG SINGLE NONE 36
EGP CAL CBG DOUBLE NONE 37
EGP CBG CAX SINGLE NONE 38
EGP CAV CAT SINGLE NONE 39
EGP CAV NBM SINGLE NONE 40
EGP CAT NBL SINGLE NONE 41
EGP CAX NBM SINGLE NONE 42
EGP NBM CAU SINGLE NONE 43
EGP NBL CAA SINGLE NONE 44
EGP NBL CAS SINGLE NONE 45
EGP CAU CAS SINGLE NONE 46
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
EGP MurckoScaffold S1 scaffold 'O=C(Cn1cc(CN2CCNCC2)c2ccc(NC(=S)NCCc3c[nH]c4ccccc34)cc21)N1CCOCC1' InChI=1S/C30H37N7O2S/c38-29(36-13-15-39-16-14-36)21-37-20-23(19-35-11-9-31-10-12-35)26-6-5-24(17-28(26)37)34-30(40)32-8-7-22-18-33-27-4-2-1-3-25(22)27/h1-6,17-18,20,31,33H,7-16,19,21H2,(H2,32,34,40) ZCZQUGVQFAPXRK-UHFFFAOYSA-N
EGP amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
EGP indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
EGP peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
EGP phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
EGP piperazine F5 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
EGP pyrrole F6 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
EGP N S1 1
EGP CA S1 1
EGP C S1 1
EGP O S1 1
EGP CAD S1 1
EGP CAE S1 1
EGP CAF S1 1
EGP CAG S1 1
EGP CAH S1 1
EGP CAI S1 1
EGP CAJ S1 1
EGP CAK S1 1
EGP CAL S1 1
EGP CAM S1 1
EGP CAN S1 1
EGP CAO S1 1
EGP CAP S1 1
EGP CAQ S1 1
EGP CAR S1 1
EGP CAS S1 1
EGP CAT S1 1
EGP CAU S1 1
EGP CAV S1 1
EGP CAX S1 1
EGP CBC S1 1
EGP CBE S1 1
EGP CBF S1 1
EGP CBG S1 1
EGP CBH S1 1
EGP CBI S1 1
EGP CBJ S1 1
EGP CBK S1 1
EGP NAY S1 1
EGP NAZ S1 1
EGP NBA S1 1
EGP NBL S1 1
EGP NBM S1 1
EGP NBN S1 1
EGP OBB S1 1
EGP SAC S1 1
EGP NBN F1 1
EGP C F1 1
EGP O F1 1
EGP CA F1 1
EGP CBH F2 1
EGP CBI F2 1
EGP CBF F2 1
EGP CAJ F2 1
EGP NBA F2 1
EGP CAH F2 1
EGP CAE F2 1
EGP CAD F2 1
EGP CAG F2 1
EGP CBK F2 2
EGP CBJ F2 2
EGP CBG F2 2
EGP CAL F2 2
EGP N F2 2
EGP CAI F2 2
EGP CAF F2 2
EGP CBE F2 2
EGP CAK F2 2
EGP O F3 1
EGP C F3 1
EGP CA F3 1
EGP N F3 1
EGP CAD F4 1
EGP CAE F4 1
EGP CAH F4 1
EGP CBI F4 1
EGP CBH F4 1
EGP CAG F4 1
EGP CAF F4 2
EGP CBE F4 2
EGP CAK F4 2
EGP CBK F4 2
EGP CBJ F4 2
EGP CAI F4 2
EGP NBL F5 1
EGP CAT F5 1
EGP CAV F5 1
EGP NBM F5 1
EGP CAU F5 1
EGP CAS F5 1
EGP CAJ F6 1
EGP CBF F6 1
EGP CBI F6 1
EGP CBH F6 1
EGP NBA F6 1
EGP CAL F6 2
EGP CBG F6 2
EGP CBJ F6 2
EGP CBK F6 2
EGP N F6 2
#
_pdbe_chem_comp_rdkit_properties.comp_id EGP
_pdbe_chem_comp_rdkit_properties.exactmw 573.289
_pdbe_chem_comp_rdkit_properties.amw 573.767
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 41
_pdbe_chem_comp_rdkit_properties.NumAtoms 80
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.419
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 300.924
_pdbe_chem_comp_rdkit_properties.tpsa 80.800
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.911
_pdbe_chem_comp_rdkit_properties.CrippenMR 162.569
_pdbe_chem_comp_rdkit_properties.chi0v 20.672
_pdbe_chem_comp_rdkit_properties.chi1v 11.250
_pdbe_chem_comp_rdkit_properties.chi2v 4.995
_pdbe_chem_comp_rdkit_properties.chi3v 4.995
_pdbe_chem_comp_rdkit_properties.chi4v 3.259
_pdbe_chem_comp_rdkit_properties.chi0n 58.855
_pdbe_chem_comp_rdkit_properties.chi1n 30.183
_pdbe_chem_comp_rdkit_properties.chi2n 4.812
_pdbe_chem_comp_rdkit_properties.chi3n 4.812
_pdbe_chem_comp_rdkit_properties.chi4n 3.122
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.440
_pdbe_chem_comp_rdkit_properties.kappa1 7.547
_pdbe_chem_comp_rdkit_properties.kappa2 12.605
_pdbe_chem_comp_rdkit_properties.kappa3 6.564
_pdbe_chem_comp_rdkit_properties.Phi 2.320
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
EGP UniChem ChEMBL CHEMBL4163317
EGP UniChem PDBe EGP
EGP UniChem PubChem 135747590
EGP UniChem BindingDb 50366289
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
EGP N -2.852 1.392 -0.447 ETKDGv3 1
EGP CA -3.463 2.662 -0.835 ETKDGv3 2
EGP C -3.630 3.580 0.351 ETKDGv3 3
EGP O -3.021 3.311 1.424 ETKDGv3 4
EGP CAA -4.958 -5.977 -1.218 ETKDGv3 5
EGP CAD 10.540 -0.563 0.146 ETKDGv3 6
EGP CAE 9.678 0.470 0.284 ETKDGv3 7
EGP CAF 1.046 0.189 0.534 ETKDGv3 8
EGP CAG 10.032 -1.954 -0.008 ETKDGv3 9
EGP CAH 8.209 0.230 0.284 ETKDGv3 10
EGP CAI -0.161 -0.627 0.832 ETKDGv3 11
EGP CAJ 6.606 -2.946 -0.092 ETKDGv3 12
EGP CAK -0.415 1.900 -0.477 ETKDGv3 13
EGP CAL -3.546 0.266 0.110 ETKDGv3 14
EGP CAM 4.821 -0.349 -1.278 ETKDGv3 15
EGP CAN -5.457 6.623 -1.013 ETKDGv3 16
EGP CAO -5.199 6.905 1.261 ETKDGv3 17
EGP CAP 5.155 -0.887 0.115 ETKDGv3 18
EGP CAQ -5.146 5.124 -0.972 ETKDGv3 19
EGP CAR -4.870 5.432 1.516 ETKDGv3 20
EGP CAS -2.969 -4.575 -1.427 ETKDGv3 21
EGP CAT -3.861 -5.205 0.801 ETKDGv3 22
EGP CAU -3.114 -3.165 -0.837 ETKDGv3 23
EGP CAV -2.690 -4.348 1.302 ETKDGv3 24
EGP CAX -3.100 -1.935 1.277 ETKDGv3 25
EGP CBC 3.402 1.678 -0.622 ETKDGv3 26
EGP CBE 0.936 1.385 -0.104 ETKDGv3 27
EGP CBF 6.460 -1.625 0.094 ETKDGv3 28
EGP CBG -2.704 -0.639 0.629 ETKDGv3 29
EGP CBH 8.710 -2.129 0.003 ETKDGv3 30
EGP CBI 7.792 -1.032 0.152 ETKDGv3 31
EGP CBJ -1.344 -0.138 0.459 ETKDGv3 32
EGP CBK -1.474 1.133 -0.202 ETKDGv3 33
EGP NAY 3.560 0.392 -1.249 ETKDGv3 34
EGP NAZ 2.088 2.201 -0.370 ETKDGv3 35
EGP NBA 7.984 -3.338 -0.146 ETKDGv3 36
EGP NBL -3.670 -5.600 -0.614 ETKDGv3 37
EGP NBM -2.547 -3.086 0.532 ETKDGv3 38
EGP NBN -4.444 4.774 0.272 ETKDGv3 39
EGP OBB -6.095 7.038 0.177 ETKDGv3 40
EGP SAC 4.698 2.654 -0.371 ETKDGv3 41
EGP H1 -4.456 2.456 -1.287 ETKDGv3 42
EGP H2 -2.832 3.159 -1.601 ETKDGv3 43
EGP H3 -5.467 -6.743 -0.593 ETKDGv3 44
EGP H4 -5.623 -5.091 -1.323 ETKDGv3 45
EGP H5 -4.789 -6.427 -2.219 ETKDGv3 46
EGP H6 11.607 -0.380 0.145 ETKDGv3 47
EGP H7 10.055 1.479 0.393 ETKDGv3 48
EGP H8 2.010 -0.179 0.860 ETKDGv3 49
EGP H9 10.709 -2.789 -0.129 ETKDGv3 50
EGP H10 7.508 1.048 0.385 ETKDGv3 51
EGP H11 -0.081 -1.575 1.347 ETKDGv3 52
EGP H12 5.785 -3.641 -0.210 ETKDGv3 53
EGP H13 -0.528 2.860 -0.961 ETKDGv3 54
EGP H14 -4.624 0.170 0.114 ETKDGv3 55
EGP H15 4.722 -1.205 -1.981 ETKDGv3 56
EGP H16 5.637 0.303 -1.657 ETKDGv3 57
EGP H17 -6.139 6.820 -1.866 ETKDGv3 58
EGP H18 -4.528 7.209 -1.200 ETKDGv3 59
EGP H19 -4.266 7.490 1.089 ETKDGv3 60
EGP H20 -5.680 7.324 2.170 ETKDGv3 61
EGP H21 5.226 -0.051 0.842 ETKDGv3 62
EGP H22 4.343 -1.566 0.456 ETKDGv3 63
EGP H23 -4.522 4.884 -1.859 ETKDGv3 64
EGP H24 -6.093 4.545 -1.031 ETKDGv3 65
EGP H25 -4.069 5.385 2.285 ETKDGv3 66
EGP H26 -5.770 4.913 1.910 ETKDGv3 67
EGP H27 -3.323 -4.569 -2.483 ETKDGv3 68
EGP H28 -1.889 -4.834 -1.462 ETKDGv3 69
EGP H29 -4.804 -4.626 0.938 ETKDGv3 70
EGP H30 -3.930 -6.121 1.425 ETKDGv3 71
EGP H31 -4.193 -2.888 -0.847 ETKDGv3 72
EGP H32 -2.574 -2.451 -1.496 ETKDGv3 73
EGP H33 -2.815 -4.166 2.392 ETKDGv3 74
EGP H34 -1.751 -4.933 1.193 ETKDGv3 75
EGP H35 -4.208 -2.014 1.358 ETKDGv3 76
EGP H36 -2.688 -1.913 2.309 ETKDGv3 77
EGP H37 2.731 -0.043 -1.713 ETKDGv3 78
EGP H38 1.956 3.237 -0.398 ETKDGv3 79
EGP H39 8.365 -4.298 -0.300 ETKDGv3 80
#