data_EJB
#
_chem_comp.id EJB
_chem_comp.name
7-[5-S-(4-{[(2-ethylpyridin-3-yl)methyl]amino}butyl)-5-thio-beta-D-ribofuranosyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H32 N6 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-12-08
_chem_comp.pdbx_modified_date 2021-12-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 472.604
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code EJB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7T39
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EJB C17 C1 C 0 1 Y N N N N N 27.279 17.840 26.165 9.019 -1.216 0.490 C17 EJB 1
EJB C20 C2 C 0 1 Y N N N N N 26.656 19.182 24.405 11.045 -0.228 0.966 C20 EJB 2
EJB C21 C3 C 0 1 Y N N N N N 27.809 18.900 23.704 10.800 0.796 0.071 C21 EJB 3
EJB C22 C4 C 0 1 Y N N N N N 28.736 18.045 24.276 9.607 0.806 -0.635 C22 EJB 4
EJB C11 C5 C 0 1 N N N N N N 32.998 13.486 25.269 1.507 1.288 0.163 C11 EJB 5
EJB C12 C6 C 0 1 N N N N N N 31.523 13.162 25.171 2.593 0.751 -0.772 C12 EJB 6
EJB C14 C7 C 0 1 N N N N N N 29.810 14.875 24.521 5.028 0.234 -0.985 C14 EJB 7
EJB C19 C8 C 0 1 N N N N N N 26.163 18.232 28.370 8.332 -3.485 -0.237 C19 EJB 8
EJB C1 C9 C 0 1 Y N N N N N 40.240 8.437 28.279 -8.689 -0.757 -1.105 C1 EJB 9
EJB O1 O1 O 0 1 N N N N N N 37.001 11.967 23.048 -3.818 4.016 0.628 O1 EJB 10
EJB C8 C10 C 0 1 N N S N N N 36.123 11.688 24.133 -3.614 2.645 0.977 C8 EJB 11
EJB C7 C11 C 0 1 N N R N N N 36.206 10.241 24.643 -4.929 1.847 0.826 C7 EJB 12
EJB O O2 O 0 1 N N N N N N 36.526 9.277 23.644 -5.984 2.701 0.379 O EJB 13
EJB C9 C12 C 0 1 N N S N N N 36.554 12.505 25.350 -2.648 1.970 -0.022 C9 EJB 14
EJB O2 O3 O 0 1 N N N N N N 37.465 11.660 26.077 -3.166 0.633 -0.190 O2 EJB 15
EJB C6 C13 C 0 1 N N R N N N 37.358 10.317 25.648 -4.602 0.785 -0.247 C6 EJB 16
EJB N3 N1 N 0 1 Y N N N N N 37.183 9.482 26.827 -5.262 -0.484 0.073 N3 EJB 17
EJB C2 C14 C 0 1 Y N N N N N 38.190 8.941 27.588 -6.548 -0.805 -0.262 C2 EJB 18
EJB N2 N2 N 0 1 Y N N N N N 39.506 9.103 27.386 -7.521 -0.179 -0.922 N2 EJB 19
EJB N1 N3 N 0 1 Y N N N N N 39.828 7.684 29.299 -8.964 -1.968 -0.655 N1 EJB 20
EJB C5 C15 C 0 1 Y N N N N N 35.972 9.092 27.379 -4.680 -1.523 0.753 C5 EJB 21
EJB C4 C16 C 0 1 Y N N N N N 36.185 8.309 28.461 -5.557 -2.532 0.877 C4 EJB 22
EJB C3 C17 C 0 1 Y N N N N N 37.605 8.194 28.616 -6.793 -2.102 0.225 C3 EJB 23
EJB C C18 C 0 1 Y N N N N N 38.500 7.549 29.501 -8.055 -2.675 0.011 C EJB 24
EJB N N4 N 0 1 N N N N N N 38.085 6.826 30.546 -8.348 -3.943 0.480 N EJB 25
EJB C10 C19 C 0 1 N N N N N N 35.534 12.990 26.366 -1.232 1.925 0.554 C10 EJB 26
EJB S S1 S 0 1 N N N N N N 33.931 12.199 26.131 -0.092 1.265 -0.693 S EJB 27
EJB C13 C20 C 0 1 N N N N N N 30.833 13.876 24.039 3.942 0.771 -0.050 C13 EJB 28
EJB N4 N5 N 0 1 N N N N N N 30.434 15.975 25.255 6.323 0.253 -0.292 N4 EJB 29
EJB C15 C21 C 0 1 N N N N N N 29.512 16.603 26.195 7.393 -0.257 -1.161 C15 EJB 30
EJB C16 C22 C 0 1 Y N N N N N 28.496 17.496 25.532 8.703 -0.223 -0.417 C16 EJB 31
EJB N5 N6 N 0 1 Y N N N N N 26.378 18.669 25.615 10.162 -1.190 1.147 N5 EJB 32
EJB C18 C23 C 0 1 N N N N N N 26.894 17.269 27.503 8.044 -2.339 0.735 C18 EJB 33
EJB H1 H1 H 0 1 N N N N N N 25.937 19.852 23.957 11.970 -0.241 1.523 H1 EJB 34
EJB H2 H2 H 0 1 N N N N N N 27.985 19.336 22.732 11.527 1.582 -0.074 H2 EJB 35
EJB H3 H3 H 0 1 N N N N N N 29.646 17.804 23.747 9.389 1.594 -1.341 H3 EJB 36
EJB H4 H4 H 0 1 N N N N N N 33.404 13.596 24.253 1.452 0.661 1.053 H4 EJB 37
EJB H5 H5 H 0 1 N N N N N N 33.116 14.434 25.815 1.749 2.310 0.452 H5 EJB 38
EJB H6 H6 H 0 1 N N N N N N 31.038 13.452 26.115 2.351 -0.271 -1.061 H6 EJB 39
EJB H7 H7 H 0 1 N N N N N N 31.412 12.078 25.020 2.648 1.377 -1.662 H7 EJB 40
EJB H8 H8 H 0 1 N N N N N N 29.274 15.285 23.652 4.786 -0.789 -1.274 H8 EJB 41
EJB H9 H9 H 0 1 N N N N N N 29.096 14.363 25.184 5.083 0.860 -1.875 H9 EJB 42
EJB H10 H10 H 0 1 N N N N N N 25.915 17.749 29.327 8.225 -3.128 -1.262 H10 EJB 43
EJB H11 H11 H 0 1 N N N N N N 26.797 19.111 28.557 9.348 -3.846 -0.082 H11 EJB 44
EJB H12 H12 H 0 1 N N N N N N 25.237 18.548 27.867 7.626 -4.297 -0.060 H12 EJB 45
EJB H13 H13 H 0 1 N N N N N N 41.310 8.519 28.160 -9.455 -0.217 -1.641 H13 EJB 46
EJB H14 H14 H 0 1 N N N N N N 36.900 12.874 22.783 -4.462 4.472 1.187 H14 EJB 47
EJB H15 H15 H 0 1 N N N N N N 35.081 11.929 23.874 -3.233 2.564 1.994 H15 EJB 48
EJB H16 H16 H 0 1 N N N N N N 35.274 9.979 25.166 -5.196 1.369 1.768 H16 EJB 49
EJB H17 H17 H 0 1 N N N N N N 36.558 8.412 24.036 -6.190 3.423 0.988 H17 EJB 50
EJB H18 H18 H 0 1 N N N N N N 37.104 13.384 24.983 -2.655 2.502 -0.974 H18 EJB 51
EJB H19 H19 H 0 1 N N N N N N 38.282 10.019 25.131 -4.907 1.134 -1.233 H19 EJB 52
EJB H20 H20 H 0 1 N N N N N N 35.000 9.373 27.000 -3.669 -1.528 1.132 H20 EJB 53
EJB H21 H21 H 0 1 N N N N N N 35.430 7.857 29.088 -5.383 -3.480 1.364 H21 EJB 54
EJB H22 H22 H 0 1 N N N N N N 38.877 6.476 31.046 -9.225 -4.327 0.325 H22 EJB 55
EJB H23 H23 H 0 1 N N N N N N 37.536 7.401 31.152 -7.676 -4.447 0.965 H23 EJB 56
EJB H24 H24 H 0 1 N N N N N N 35.901 12.759 27.377 -0.921 2.931 0.834 H24 EJB 57
EJB H25 H25 H 0 1 N N N N N N 35.414 14.078 26.259 -1.219 1.283 1.435 H25 EJB 58
EJB H26 H26 H 0 1 N N N N N N 30.327 13.130 23.408 4.185 1.793 0.239 H26 EJB 59
EJB H27 H27 H 0 1 N N N N N N 31.590 14.407 23.443 3.887 0.144 0.840 H27 EJB 60
EJB H28 H28 H 0 1 N N N N N N 31.219 15.619 25.763 6.541 1.179 0.043 H28 EJB 61
EJB H30 H30 H 0 1 N N N N N N 28.977 15.811 26.740 7.167 -1.283 -1.451 H30 EJB 62
EJB H31 H31 H 0 1 N N N N N N 30.096 17.207 26.905 7.464 0.366 -2.052 H31 EJB 63
EJB H32 H32 H 0 1 N N N N N N 26.250 16.393 27.336 8.151 -2.696 1.759 H32 EJB 64
EJB H33 H33 H 0 1 N N N N N N 27.810 16.956 28.025 7.028 -1.977 0.580 H33 EJB 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EJB O1 C8 SING N N 1
EJB O C7 SING N N 2
EJB C21 C22 DOUB Y N 3
EJB C21 C20 SING Y N 4
EJB C13 C14 SING N N 5
EJB C13 C12 SING N N 6
EJB C8 C7 SING N N 7
EJB C8 C9 SING N N 8
EJB C22 C16 SING Y N 9
EJB C20 N5 DOUB Y N 10
EJB C14 N4 SING N N 11
EJB C7 C6 SING N N 12
EJB C12 C11 SING N N 13
EJB N4 C15 SING N N 14
EJB C11 S SING N N 15
EJB C9 O2 SING N N 16
EJB C9 C10 SING N N 17
EJB C16 C17 DOUB Y N 18
EJB C16 C15 SING N N 19
EJB N5 C17 SING Y N 20
EJB C6 O2 SING N N 21
EJB C6 N3 SING N N 22
EJB S C10 SING N N 23
EJB C17 C18 SING N N 24
EJB N3 C5 SING Y N 25
EJB N3 C2 SING Y N 26
EJB C5 C4 DOUB Y N 27
EJB N2 C2 DOUB Y N 28
EJB N2 C1 SING Y N 29
EJB C18 C19 SING N N 30
EJB C2 C3 SING Y N 31
EJB C1 N1 DOUB Y N 32
EJB C4 C3 SING Y N 33
EJB C3 C DOUB Y N 34
EJB N1 C SING Y N 35
EJB C N SING N N 36
EJB C20 H1 SING N N 37
EJB C21 H2 SING N N 38
EJB C22 H3 SING N N 39
EJB C11 H4 SING N N 40
EJB C11 H5 SING N N 41
EJB C12 H6 SING N N 42
EJB C12 H7 SING N N 43
EJB C14 H8 SING N N 44
EJB C14 H9 SING N N 45
EJB C19 H10 SING N N 46
EJB C19 H11 SING N N 47
EJB C19 H12 SING N N 48
EJB C1 H13 SING N N 49
EJB O1 H14 SING N N 50
EJB C8 H15 SING N N 51
EJB C7 H16 SING N N 52
EJB O H17 SING N N 53
EJB C9 H18 SING N N 54
EJB C6 H19 SING N N 55
EJB C5 H20 SING N N 56
EJB C4 H21 SING N N 57
EJB N H22 SING N N 58
EJB N H23 SING N N 59
EJB C10 H24 SING N N 60
EJB C10 H25 SING N N 61
EJB C13 H26 SING N N 62
EJB C13 H27 SING N N 63
EJB N4 H28 SING N N 64
EJB C15 H30 SING N N 65
EJB C15 H31 SING N N 66
EJB C18 H32 SING N N 67
EJB C18 H33 SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EJB SMILES ACDLabs 12.01 CCc1ncccc1CNCCCCSCC1OC(n2ccc3c(N)ncnc32)C(O)C1O
EJB InChI InChI 1.03 InChI=1S/C23H32N6O3S/c1-2-17-15(6-5-9-26-17)12-25-8-3-4-11-33-13-18-19(30)20(31)23(32-18)29-10-7-16-21(24)27-14-28-22(16)29/h5-7,9-10,14,18-20,23,25,30-31H,2-4,8,11-13H2,1H3,(H2,24,27,28)/t18-,19-,20-,23-/m1/s1
EJB InChIKey InChI 1.03 SBQBBUZLJIAJBR-GLHSZLCASA-N
EJB SMILES_CANONICAL CACTVS 3.385 CCc1ncccc1CNCCCCSC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3ccc4c(N)ncnc34
EJB SMILES CACTVS 3.385 CCc1ncccc1CNCCCCSC[CH]2O[CH]([CH](O)[CH]2O)n3ccc4c(N)ncnc34
EJB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCc1c(cccn1)CNCCCCSC[C@@H]2[C@H]([C@H]([C@@H](O2)n3ccc4c3ncnc4N)O)O
EJB SMILES "OpenEye OEToolkits" 2.0.7 CCc1c(cccn1)CNCCCCSCC2C(C(C(O2)n3ccc4c3ncnc4N)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
EJB "SYSTEMATIC NAME" ACDLabs 12.01 7-[5-S-(4-{[(2-ethylpyridin-3-yl)methyl]amino}butyl)-5-thio-beta-D-ribofuranosyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine
EJB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (2~{R},3~{R},4~{S},5~{S})-2-(4-azanylpyrrolo[2,3-d]pyrimidin-7-yl)-5-[4-[(2-ethylpyridin-3-yl)methylamino]butylsulfanylmethyl]oxolane-3,4-diol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EJB 'Create component' 2021-12-08 RCSB
EJB 'Initial release' 2021-12-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
EJB C17 C 10.210 -9.742 1
EJB C20 C 8.283 -11.484 2
EJB C21 C 7.277 -10.371 3
EJB C22 C 7.738 -8.944 4
EJB C11 C 7.571 -1.008 5
EJB C12 C 8.577 -2.121 6
EJB C14 C 9.121 -4.662 7
EJB C19 C 12.683 -10.541 8
EJB C1 C 3.000 7.269 9
EJB O1 O 10.129 2.546 10
EJB C8 C 8.913 3.425 11
EJB C7 C 8.911 4.925 12
EJB O O 10.123 5.809 13
EJB C9 C 7.487 2.959 14
EJB O2 O 6.604 4.171 15
EJB C6 C 7.483 5.386 16
EJB N3 N 7.018 6.812 17
EJB C2 C 5.598 7.269 18
EJB N2 N 4.299 6.519 19
EJB N1 N 3.000 8.769 20
EJB C5 C 7.893 8.019 21
EJB C4 C 7.018 9.226 22
EJB C3 C 5.598 8.769 23
EJB C C 4.299 9.519 24
EJB N N 4.299 11.019 25
EJB C10 C 7.027 1.532 26
EJB S S 8.032 0.419 27
EJB C13 C 8.116 -3.549 28
EJB N4 N 8.660 -6.089 29
EJB C15 C 9.666 -7.202 30
EJB C16 C 9.205 -8.630 31
EJB N5 N 9.749 -11.170 32
EJB C18 C 11.677 -9.428 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
EJB C8 O1 SINGLE BEGINDASH 1
EJB C7 O SINGLE BEGINDASH 2
EJB C21 C22 DOUBLE NONE 3
EJB C21 C20 SINGLE NONE 4
EJB C13 C14 SINGLE NONE 5
EJB C13 C12 SINGLE NONE 6
EJB C8 C7 SINGLE NONE 7
EJB C8 C9 SINGLE NONE 8
EJB C22 C16 SINGLE NONE 9
EJB C20 N5 DOUBLE NONE 10
EJB C14 N4 SINGLE NONE 11
EJB C7 C6 SINGLE NONE 12
EJB C12 C11 SINGLE NONE 13
EJB N4 C15 SINGLE NONE 14
EJB C11 S SINGLE NONE 15
EJB C9 O2 SINGLE NONE 16
EJB C9 C10 SINGLE BEGINWEDGE 17
EJB C16 C17 DOUBLE NONE 18
EJB C16 C15 SINGLE NONE 19
EJB N5 C17 SINGLE NONE 20
EJB C6 O2 SINGLE NONE 21
EJB C6 N3 SINGLE BEGINWEDGE 22
EJB S C10 SINGLE NONE 23
EJB C17 C18 SINGLE NONE 24
EJB N3 C5 SINGLE NONE 25
EJB N3 C2 SINGLE NONE 26
EJB C5 C4 DOUBLE NONE 27
EJB N2 C2 SINGLE NONE 28
EJB N2 C1 DOUBLE NONE 29
EJB C18 C19 SINGLE NONE 30
EJB C2 C3 DOUBLE NONE 31
EJB C1 N1 SINGLE NONE 32
EJB C4 C3 SINGLE NONE 33
EJB C3 C SINGLE NONE 34
EJB N1 C DOUBLE NONE 35
EJB C N SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
EJB MurckoScaffold S1 scaffold 'c1cncc(CNCCCCSC[C@@H]2CC[C@H](n3ccc4cncnc43)O2)c1' InChI=1S/C21H27N5OS/c1(8-22-12-17-4-3-9-23-13-17)2-11-28-15-19-5-6-20(27-19)26-10-7-18-14-24-16-25-21(18)26/h3-4,7,9-10,13-14,16,19-20,22H,1-2,5-6,8,11-12,15H2/t19-,20+/m0/s1 SZEKFCYLWCFBEA-VQTJNVASSA-N
EJB pyridine F1 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
EJB pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
EJB pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
EJB C17 S1 1
EJB C20 S1 1
EJB C21 S1 1
EJB C22 S1 1
EJB C11 S1 1
EJB C12 S1 1
EJB C14 S1 1
EJB C1 S1 1
EJB C8 S1 1
EJB C7 S1 1
EJB C9 S1 1
EJB O2 S1 1
EJB C6 S1 1
EJB N3 S1 1
EJB C2 S1 1
EJB N2 S1 1
EJB N1 S1 1
EJB C5 S1 1
EJB C4 S1 1
EJB C3 S1 1
EJB C S1 1
EJB C10 S1 1
EJB S S1 1
EJB C13 S1 1
EJB N4 S1 1
EJB C15 S1 1
EJB C16 S1 1
EJB N5 S1 1
EJB C17 F1 1
EJB C16 F1 1
EJB C22 F1 1
EJB C21 F1 1
EJB C20 F1 1
EJB N5 F1 1
EJB C3 F2 1
EJB C2 F2 1
EJB N2 F2 1
EJB C1 F2 1
EJB N1 F2 1
EJB C F2 1
EJB C2 F3 1
EJB C3 F3 1
EJB C4 F3 1
EJB C5 F3 1
EJB N3 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id EJB
_pdbe_chem_comp_rdkit_properties.exactmw 472.226
_pdbe_chem_comp_rdkit_properties.amw 472.615
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 65
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.522
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 242.643
_pdbe_chem_comp_rdkit_properties.tpsa 131.340
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.975
_pdbe_chem_comp_rdkit_properties.CrippenMR 126.183
_pdbe_chem_comp_rdkit_properties.chi0v 16.633
_pdbe_chem_comp_rdkit_properties.chi1v 9.225
_pdbe_chem_comp_rdkit_properties.chi2v 4.118
_pdbe_chem_comp_rdkit_properties.chi3v 4.118
_pdbe_chem_comp_rdkit_properties.chi4v 2.624
_pdbe_chem_comp_rdkit_properties.chi0n 47.816
_pdbe_chem_comp_rdkit_properties.chi1n 24.066
_pdbe_chem_comp_rdkit_properties.chi2n 3.626
_pdbe_chem_comp_rdkit_properties.chi3n 3.626
_pdbe_chem_comp_rdkit_properties.chi4n 2.244
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.240
_pdbe_chem_comp_rdkit_properties.kappa1 6.300
_pdbe_chem_comp_rdkit_properties.kappa2 11.258
_pdbe_chem_comp_rdkit_properties.kappa3 5.468
_pdbe_chem_comp_rdkit_properties.Phi 2.149
#
_pdbe_chem_comp_external_mappings.comp_id EJB
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id EJB
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
EJB C17 -5.225 -0.941 -0.255 ETKDGv3 1
EJB C20 -7.336 -1.411 -1.314 ETKDGv3 2
EJB C21 -6.642 -2.242 -2.308 ETKDGv3 3
EJB C22 -5.318 -2.382 -2.230 ETKDGv3 4
EJB C11 -0.119 2.837 -0.635 ETKDGv3 5
EJB C12 -1.256 2.244 -1.475 ETKDGv3 6
EJB C14 -2.399 0.150 -2.319 ETKDGv3 7
EJB C19 -5.457 0.638 1.723 ETKDGv3 8
EJB C1 2.692 -1.557 -1.044 ETKDGv3 9
EJB O1 2.644 3.676 1.327 ETKDGv3 10
EJB C8 2.852 2.288 1.334 ETKDGv3 11
EJB C7 4.176 1.906 1.959 ETKDGv3 12
EJB O 4.651 2.890 2.849 ETKDGv3 13
EJB C9 1.847 1.582 2.236 ETKDGv3 14
EJB O2 2.453 0.407 2.726 ETKDGv3 15
EJB C6 3.853 0.597 2.694 ETKDGv3 16
EJB N3 4.487 -0.541 2.030 ETKDGv3 17
EJB C2 4.110 -1.137 0.795 ETKDGv3 18
EJB N2 2.854 -0.990 0.121 ETKDGv3 19
EJB N1 3.769 -2.316 -1.646 ETKDGv3 20
EJB C5 5.861 -0.921 2.167 ETKDGv3 21
EJB C4 6.252 -1.692 1.151 ETKDGv3 22
EJB C3 5.098 -1.821 0.269 ETKDGv3 23
EJB C 4.921 -2.455 -1.046 ETKDGv3 24
EJB N 5.971 -3.201 -1.661 ETKDGv3 25
EJB C10 0.544 1.219 1.509 ETKDGv3 26
EJB S -0.468 2.707 1.160 ETKDGv3 27
EJB C13 -1.277 0.711 -1.430 ETKDGv3 28
EJB N4 -2.427 -1.324 -2.332 ETKDGv3 29
EJB C15 -3.050 -1.905 -1.134 ETKDGv3 30
EJB C16 -4.551 -1.708 -1.154 ETKDGv3 31
EJB N5 -6.659 -0.821 -0.374 ETKDGv3 32
EJB C18 -4.520 -0.223 0.878 ETKDGv3 33
EJB H1 -8.410 -1.291 -1.362 ETKDGv3 34
EJB H2 -7.202 -2.734 -3.093 ETKDGv3 35
EJB H3 -4.803 -2.993 -2.961 ETKDGv3 36
EJB H4 0.852 2.380 -0.912 ETKDGv3 37
EJB H5 -0.043 3.919 -0.872 ETKDGv3 38
EJB H6 -2.229 2.647 -1.118 ETKDGv3 39
EJB H7 -1.117 2.572 -2.528 ETKDGv3 40
EJB H8 -2.231 0.496 -3.362 ETKDGv3 41
EJB H9 -3.383 0.562 -2.005 ETKDGv3 42
EJB H10 -5.940 1.416 1.093 ETKDGv3 43
EJB H11 -4.875 1.143 2.523 ETKDGv3 44
EJB H12 -6.238 0.008 2.200 ETKDGv3 45
EJB H13 1.750 -1.456 -1.564 ETKDGv3 46
EJB H14 3.210 4.041 0.598 ETKDGv3 47
EJB H15 2.806 1.875 0.299 ETKDGv3 48
EJB H16 4.941 1.757 1.165 ETKDGv3 49
EJB H17 3.968 3.023 3.558 ETKDGv3 50
EJB H18 1.599 2.230 3.108 ETKDGv3 51
EJB H19 4.222 0.640 3.743 ETKDGv3 52
EJB H20 6.505 -0.593 2.973 ETKDGv3 53
EJB H21 7.245 -2.095 1.002 ETKDGv3 54
EJB H22 6.893 -3.318 -1.186 ETKDGv3 55
EJB H23 5.828 -3.641 -2.597 ETKDGv3 56
EJB H24 -0.059 0.567 2.175 ETKDGv3 57
EJB H25 0.757 0.632 0.594 ETKDGv3 58
EJB H26 -0.297 0.319 -1.782 ETKDGv3 59
EJB H27 -1.433 0.384 -0.384 ETKDGv3 60
EJB H28 -1.449 -1.689 -2.415 ETKDGv3 61
EJB H30 -2.862 -3.001 -1.137 ETKDGv3 62
EJB H31 -2.565 -1.534 -0.210 ETKDGv3 63
EJB H32 -4.041 -0.972 1.544 ETKDGv3 64
EJB H33 -3.733 0.441 0.463 ETKDGv3 65
#