data_ES6
#
_chem_comp.id ES6
_chem_comp.name "2-oxo-1,2-dihydropyridine-3-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H5 N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-12-04
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 139.109
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ES6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3KQQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ES6 O01 O01 O 0 1 N N N N N N 1.689 -1.122 -0.000 2.240 -1.404 0.003 O01 ES6 1
ES6 C02 C02 C 0 1 N N N N N N 1.516 0.088 -0.000 1.659 -0.336 0.001 C02 ES6 2
ES6 O03 O03 O 0 1 N N N N N N 2.559 0.740 -0.000 2.362 0.814 -0.007 O03 ES6 3
ES6 C04 C04 C 0 1 N N N N N N 0.239 0.668 0.000 0.190 -0.299 -0.001 C04 ES6 4
ES6 C05 C05 C 0 1 N N N N N N 0.084 2.079 0.000 -0.549 -1.481 0.001 C05 ES6 5
ES6 C06 C06 C 0 1 N N N N N N -1.188 2.677 0.000 -1.941 -1.406 0.000 C06 ES6 6
ES6 C07 C07 C 0 1 N N N N N N -2.323 1.855 0.000 -2.559 -0.197 -0.002 C07 ES6 7
ES6 N08 N08 N 0 1 N N N N N N -2.179 0.508 0.000 -1.848 0.955 -0.004 N08 ES6 8
ES6 C09 C09 C 0 1 N N N N N N -0.962 -0.098 0.000 -0.501 0.940 0.003 C09 ES6 9
ES6 O10 O10 O 0 1 N N N N N N -0.973 -1.351 -0.000 0.122 1.988 0.006 O10 ES6 10
ES6 H05 H05 H 0 1 N N N N N N 0.963 2.707 0.000 -0.052 -2.440 0.002 H05 ES6 11
ES6 H06 H06 H 0 1 N N N N N N -1.289 3.752 0.000 -2.530 -2.312 0.001 H06 ES6 12
ES6 H07 H07 H 0 1 N N N N N N -3.310 2.294 0.000 -3.638 -0.153 -0.003 H07 ES6 13
ES6 HN08 HN08 H 0 0 N N N N N N -3.000 -0.063 0.000 -2.315 1.805 -0.005 HN08 ES6 14
ES6 H5 H5 H 0 1 N N N N N N 3.303 0.149 0.000 3.326 0.739 -0.009 H5 ES6 15
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ES6 O01 C02 DOUB N N 1
ES6 C02 O03 SING N N 2
ES6 C02 C04 SING N N 3
ES6 C04 C05 DOUB N N 4
ES6 C04 C09 SING N N 5
ES6 C05 C06 SING N N 6
ES6 C05 H05 SING N N 7
ES6 C06 C07 DOUB N N 8
ES6 C06 H06 SING N N 9
ES6 C07 N08 SING N N 10
ES6 C07 H07 SING N N 11
ES6 N08 C09 SING N N 12
ES6 N08 HN08 SING N N 13
ES6 C09 O10 DOUB N N 14
ES6 H5 O03 SING N N 15
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ES6 SMILES_CANONICAL CACTVS 3.352 OC(=O)C1=CC=CNC1=O
ES6 SMILES CACTVS 3.352 OC(=O)C1=CC=CNC1=O
ES6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 C1=CNC(=O)C(=C1)C(=O)O
ES6 SMILES "OpenEye OEToolkits" 1.7.0 C1=CNC(=O)C(=C1)C(=O)O
ES6 InChI InChI 1.03 InChI=1S/C6H5NO3/c8-5-4(6(9)10)2-1-3-7-5/h1-3H,(H,7,8)(H,9,10)
ES6 InChIKey InChI 1.03 UEYQJQVBUVAELZ-UHFFFAOYSA-N
#
_pdbx_chem_comp_identifier.comp_id ES6
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.6.1
_pdbx_chem_comp_identifier.identifier "2-oxo-1H-pyridine-3-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ES6 'Create component' 2009-12-04 RCSB
ES6 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ES6 O01 O 4.299 2.482 1
ES6 C02 C 4.299 0.983 2
ES6 O03 O 3.000 0.233 3
ES6 C04 C 5.598 0.233 4
ES6 C05 C 6.897 0.983 5
ES6 C06 C 8.196 0.233 6
ES6 C07 C 8.196 -1.268 7
ES6 N08 N 6.897 -2.018 8
ES6 C09 C 5.598 -1.268 9
ES6 O10 O 4.299 -2.018 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ES6 O01 C02 DOUBLE NONE 1
ES6 C02 O03 SINGLE NONE 2
ES6 C02 C04 SINGLE NONE 3
ES6 C04 C05 DOUBLE NONE 4
ES6 C04 C09 SINGLE NONE 5
ES6 C05 C06 SINGLE NONE 6
ES6 C06 C07 DOUBLE NONE 7
ES6 C07 N08 SINGLE NONE 8
ES6 N08 C09 SINGLE NONE 9
ES6 C09 O10 DOUBLE NONE 10
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ES6 MurckoScaffold S1 scaffold 'O=c1cccc[nH]1' InChI=1S/C5H5NO/c7-5-3-1-2-4-6-5/h1-4H,(H,6,7) UBQKCCHYAOITMY-UHFFFAOYSA-N
ES6 pyridine F1 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ES6 C04 S1 1
ES6 C05 S1 1
ES6 C06 S1 1
ES6 C07 S1 1
ES6 N08 S1 1
ES6 C09 S1 1
ES6 O10 S1 1
ES6 C07 F1 1
ES6 C06 F1 1
ES6 C05 F1 1
ES6 C04 F1 1
ES6 C09 F1 1
ES6 N08 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ES6
_pdbe_chem_comp_rdkit_properties.exactmw 139.027
_pdbe_chem_comp_rdkit_properties.amw 139.110
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 15
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 63.303
_pdbe_chem_comp_rdkit_properties.tpsa 70.160
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.918
_pdbe_chem_comp_rdkit_properties.CrippenMR 33.864
_pdbe_chem_comp_rdkit_properties.chi0v 4.672
_pdbe_chem_comp_rdkit_properties.chi1v 2.310
_pdbe_chem_comp_rdkit_properties.chi2v 0.819
_pdbe_chem_comp_rdkit_properties.chi3v 0.819
_pdbe_chem_comp_rdkit_properties.chi4v 0.417
_pdbe_chem_comp_rdkit_properties.chi0n 9.672
_pdbe_chem_comp_rdkit_properties.chi1n 4.665
_pdbe_chem_comp_rdkit_properties.chi2n 0.819
_pdbe_chem_comp_rdkit_properties.chi3n 0.819
_pdbe_chem_comp_rdkit_properties.chi4n 0.417
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.580
_pdbe_chem_comp_rdkit_properties.kappa1 2.574
_pdbe_chem_comp_rdkit_properties.kappa2 2.345
_pdbe_chem_comp_rdkit_properties.kappa3 1.047
_pdbe_chem_comp_rdkit_properties.Phi 0.604
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ES6 UniChem ChEMBL CHEMBL53297
ES6 UniChem PDBe ES6
ES6 UniChem ChEBI 166572
ES6 UniChem ZINC ZINC000008698121
ES6 UniChem fdasrs TMQ68Q9BA3
ES6 UniChem SureChEMBL SCHEMBL107538
ES6 UniChem HMDB HMDB0059710
ES6 UniChem NMRShiftDB 20207519
ES6 UniChem NMRShiftDB 20211264
ES6 UniChem Nikkaji J94.850K
ES6 UniChem 'EPA CompTox Dashboard' DTXSID20209735
ES6 UniChem BRENDA 104797
ES6 UniChem ChemicalBook CB0763471
ES6 UniChem eMolecules 491917
ES6 UniChem eMolecules 713664
ES6 UniChem 'PubChem TPHARMA' 15170752
ES6 UniChem PubChem 69114
ES6 UniChem Mcule MCULE-3119679537
ES6 UniChem ACTor 609-71-2
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ES6 O01 2.553 1.494 -0.394 ETKDGv3 1
ES6 C02 2.069 0.343 -0.219 ETKDGv3 2
ES6 O03 2.925 -0.756 -0.206 ETKDGv3 3
ES6 C04 0.609 0.159 -0.030 ETKDGv3 4
ES6 C05 0.100 -1.074 0.156 ETKDGv3 5
ES6 C06 -1.350 -1.294 0.348 ETKDGv3 6
ES6 C07 -2.206 -0.269 0.341 ETKDGv3 7
ES6 N08 -1.729 1.067 0.148 ETKDGv3 8
ES6 C09 -0.330 1.310 -0.040 ETKDGv3 9
ES6 O10 0.080 2.489 -0.209 ETKDGv3 10
ES6 H05 0.745 -1.943 0.171 ETKDGv3 11
ES6 H06 -1.719 -2.301 0.494 ETKDGv3 12
ES6 H07 -3.264 -0.447 0.483 ETKDGv3 13
ES6 HN08 -2.406 1.863 0.145 ETKDGv3 14
ES6 H5 3.923 -0.641 -0.334 ETKDGv3 15
#