data_EX4
#
_chem_comp.id EX4
_chem_comp.name
(5R)-4-(4-{4-[4-fluoro-3-(trifluoromethyl)phenyl]-1-[2-(pyrrolidin-1-yl)ethyl]-1H-imidazol-2-yl}piperidin-1-yl)-5-methyl-5,8-dihydropyrido[2,3-d]pyrimidin-7(6H)-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H33 F4 N7 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-02-08
_chem_comp.pdbx_modified_date 2018-04-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 571.612
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code EX4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6CCY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EX4 C7 C1 C 0 1 Y N N N N N -8.640 19.377 -32.176 -3.148 -1.754 -0.613 C7 EX4 1
EX4 C6 C2 C 0 1 Y N N N N N -8.175 18.066 -32.213 -2.987 -0.426 -0.377 C6 EX4 2
EX4 C1 C3 C 0 1 N N N N N N -13.522 16.780 -34.369 2.607 -0.649 -1.593 C1 EX4 3
EX4 N1 N1 N 0 1 Y N N N N N -9.235 17.172 -32.323 -1.663 -0.176 -0.320 N1 EX4 4
EX4 C5 C4 C 0 1 Y N N N N N -10.356 17.911 -32.373 -1.009 -1.288 -0.511 C5 EX4 5
EX4 C4 C5 C 0 1 N N N N N N -11.736 17.346 -32.600 0.491 -1.430 -0.522 C4 EX4 6
EX4 C3 C6 C 0 1 N N N N N N -11.895 15.914 -32.037 1.057 -0.988 0.830 C3 EX4 7
EX4 C2 C7 C 0 1 N N N N N N -13.277 15.325 -32.342 2.585 -1.077 0.792 C2 EX4 8
EX4 O O1 O 0 1 N N N N N N -15.039 9.064 -33.236 7.209 4.318 0.879 O EX4 9
EX4 C28 C8 C 0 1 N N N N N N -14.917 10.259 -33.371 6.608 3.271 0.767 C28 EX4 10
EX4 N6 N2 N 0 1 N N N N N N -15.770 10.933 -34.313 7.237 2.192 0.269 N6 EX4 11
EX4 C23 C9 C 0 1 Y N N N N N -15.541 12.292 -34.660 6.539 1.021 0.009 C23 EX4 12
EX4 N5 N3 N 0 1 Y N N N N N -16.553 12.879 -35.332 7.186 -0.119 -0.220 N5 EX4 13
EX4 C22 C10 C 0 1 Y N N N N N -16.465 14.208 -35.557 6.521 -1.233 -0.454 C22 EX4 14
EX4 N4 N4 N 0 1 Y N N N N N -15.469 15.012 -35.158 5.204 -1.272 -0.473 N4 EX4 15
EX4 C27 C11 C 0 1 N N N N N N -13.842 11.071 -32.648 5.165 3.192 1.193 C27 EX4 16
EX4 C25 C12 C 0 1 N N R N N N -13.274 12.206 -33.520 4.387 2.300 0.225 C25 EX4 17
EX4 C26 C13 C 0 1 N N N N N N -12.392 11.584 -34.631 4.197 3.034 -1.104 C26 EX4 18
EX4 C24 C14 C 0 1 Y N N N N N -14.402 13.002 -34.183 5.152 1.024 -0.013 C24 EX4 19
EX4 C21 C15 C 0 1 Y N N N N N -14.443 14.435 -34.441 4.485 -0.170 -0.258 C21 EX4 20
EX4 N N5 N 0 1 N N N N N N -13.465 15.346 -33.868 3.100 -0.215 -0.279 N EX4 21
EX4 C C16 C 0 1 N N N N N N -12.131 17.431 -34.095 1.081 -0.548 -1.626 C EX4 22
EX4 N2 N6 N 0 1 Y N N N N N -10.038 19.286 -32.259 -1.894 -2.293 -0.691 N2 EX4 23
EX4 C8 C17 C 0 1 N N N N N N -10.908 20.434 -32.131 -1.569 -3.701 -0.935 C8 EX4 24
EX4 C9 C18 C 0 1 N N N N N N -10.591 21.228 -30.851 -1.341 -4.410 0.401 C9 EX4 25
EX4 N3 N7 N 0 1 N N N N N N -11.143 20.561 -29.635 -1.015 -5.822 0.157 N3 EX4 26
EX4 C13 C19 C 0 1 N N N N N N -10.344 19.405 -29.090 -0.558 -6.481 1.394 C13 EX4 27
EX4 C12 C20 C 0 1 N N N N N N -10.525 19.421 -27.566 -1.483 -7.692 1.636 C12 EX4 28
EX4 C11 C21 C 0 1 N N N N N N -10.687 20.909 -27.239 -2.054 -7.983 0.224 C11 EX4 29
EX4 C10 C22 C 0 1 N N N N N N -11.261 21.559 -28.524 -2.191 -6.555 -0.359 C10 EX4 30
EX4 C14 C23 C 0 1 Y N N N N N -6.813 17.594 -32.168 -4.073 0.572 -0.211 C14 EX4 31
EX4 C19 C24 C 0 1 Y N N N N N -5.826 18.258 -31.398 -5.403 0.159 -0.190 C19 EX4 32
EX4 C18 C25 C 0 1 Y N N N N N -4.542 17.713 -31.299 -6.410 1.090 -0.035 C18 EX4 33
EX4 C17 C26 C 0 1 Y N N N N N -4.257 16.505 -31.973 -6.100 2.433 0.099 C17 EX4 34
EX4 F F1 F 0 1 N N N N N N -3.048 15.980 -31.881 -7.089 3.341 0.250 F EX4 35
EX4 C16 C27 C 0 1 Y N N N N N -5.244 15.848 -32.739 -4.778 2.848 0.080 C16 EX4 36
EX4 C15 C28 C 0 1 Y N N N N N -6.514 16.415 -32.848 -3.765 1.924 -0.070 C15 EX4 37
EX4 C20 C29 C 0 1 N N N N N N -4.984 14.503 -33.374 -4.446 4.311 0.226 C20 EX4 38
EX4 F1 F2 F 0 1 N N N N N N -3.728 14.314 -33.762 -4.930 4.778 1.453 F1 EX4 39
EX4 F2 F3 F 0 1 N N N N N N -5.260 13.473 -32.535 -3.059 4.482 0.176 F2 EX4 40
EX4 F3 F4 F 0 1 N N N N N N -5.705 14.263 -34.475 -5.043 5.031 -0.815 F3 EX4 41
EX4 H1 H1 H 0 1 N N N N N N -8.048 20.277 -32.099 -4.084 -2.282 -0.715 H1 EX4 42
EX4 H2 H2 H 0 1 N N N N N N -14.307 17.334 -33.833 3.031 -0.011 -2.369 H2 EX4 43
EX4 H3 H3 H 0 1 N N N N N N -13.736 16.792 -35.448 2.907 -1.683 -1.770 H3 EX4 44
EX4 H4 H4 H 0 1 N N N N N N -12.443 17.984 -32.049 0.757 -2.471 -0.706 H4 EX4 45
EX4 H5 H5 H 0 1 N N N N N N -11.127 15.268 -32.488 0.757 0.040 1.032 H5 EX4 46
EX4 H6 H6 H 0 1 N N N N N N -11.755 15.944 -30.946 0.674 -1.640 1.616 H6 EX4 47
EX4 H7 H7 H 0 1 N N N N N N -14.058 15.931 -31.860 2.991 -0.749 1.749 H7 EX4 48
EX4 H8 H8 H 0 1 N N N N N N -13.334 14.291 -31.971 2.884 -2.108 0.604 H8 EX4 49
EX4 H9 H9 H 0 1 N N N N N N -16.534 10.439 -34.729 8.189 2.233 0.087 H9 EX4 50
EX4 H10 H10 H 0 1 N N N N N N -17.272 14.666 -36.110 7.073 -2.143 -0.637 H10 EX4 51
EX4 H11 H11 H 0 1 N N N N N N -13.020 10.397 -32.367 5.107 2.775 2.199 H11 EX4 52
EX4 H12 H12 H 0 1 N N N N N N -14.282 11.510 -31.740 4.731 4.192 1.190 H12 EX4 53
EX4 H13 H13 H 0 1 N N N N N N -12.662 12.877 -32.899 3.412 2.065 0.652 H13 EX4 54
EX4 H14 H14 H 0 1 N N N N N N -11.575 11.008 -34.172 5.172 3.270 -1.531 H14 EX4 55
EX4 H15 H15 H 0 1 N N N N N N -13.005 10.917 -35.255 3.643 2.399 -1.794 H15 EX4 56
EX4 H16 H16 H 0 1 N N N N N N -11.969 12.385 -35.255 3.642 3.957 -0.933 H16 EX4 57
EX4 H17 H17 H 0 1 N N N N N N -11.370 16.909 -34.694 0.781 0.487 -1.463 H17 EX4 58
EX4 H18 H18 H 0 1 N N N N N N -12.169 18.489 -34.393 0.714 -0.885 -2.596 H18 EX4 59
EX4 H19 H19 H 0 1 N N N N N N -10.770 21.089 -33.004 -2.395 -4.178 -1.463 H19 EX4 60
EX4 H20 H20 H 0 1 N N N N N N -11.952 20.091 -32.092 -0.665 -3.766 -1.540 H20 EX4 61
EX4 H21 H21 H 0 1 N N N N N N -9.499 21.313 -30.746 -0.515 -3.933 0.930 H21 EX4 62
EX4 H22 H22 H 0 1 N N N N N N -11.031 22.233 -30.937 -2.245 -4.346 1.007 H22 EX4 63
EX4 H24 H24 H 0 1 N N N N N N -10.717 18.457 -29.506 0.472 -6.818 1.275 H24 EX4 64
EX4 H25 H25 H 0 1 N N N N N N -9.281 19.525 -29.346 -0.628 -5.787 2.232 H25 EX4 65
EX4 H26 H26 H 0 1 N N N N N N -11.420 18.854 -27.271 -0.913 -8.544 2.005 H26 EX4 66
EX4 H27 H27 H 0 1 N N N N N N -9.642 19.002 -27.061 -2.283 -7.433 2.330 H27 EX4 67
EX4 H28 H28 H 0 1 N N N N N N -9.714 21.354 -26.985 -1.356 -8.580 -0.364 H28 EX4 68
EX4 H29 H29 H 0 1 N N N N N N -11.382 21.044 -26.397 -3.025 -8.474 0.289 H29 EX4 69
EX4 H30 H30 H 0 1 N N N N N N -10.689 22.465 -28.773 -3.112 -6.089 -0.010 H30 EX4 70
EX4 H31 H31 H 0 1 N N N N N N -12.317 21.824 -28.370 -2.170 -6.586 -1.449 H31 EX4 71
EX4 H32 H32 H 0 1 N N N N N N -6.064 19.181 -30.890 -5.646 -0.888 -0.295 H32 EX4 72
EX4 H33 H33 H 0 1 N N N N N N -3.780 18.208 -30.716 -7.442 0.771 -0.019 H33 EX4 73
EX4 H34 H34 H 0 1 N N N N N N -7.266 15.940 -33.460 -2.735 2.248 -0.085 H34 EX4 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EX4 C22 N5 SING Y N 1
EX4 C22 N4 DOUB Y N 2
EX4 N5 C23 DOUB Y N 3
EX4 N4 C21 SING Y N 4
EX4 C23 N6 SING N N 5
EX4 C23 C24 SING Y N 6
EX4 C26 C25 SING N N 7
EX4 F3 C20 SING N N 8
EX4 C21 C24 DOUB Y N 9
EX4 C21 N SING N N 10
EX4 C1 C SING N N 11
EX4 C1 N SING N N 12
EX4 N6 C28 SING N N 13
EX4 C24 C25 SING N N 14
EX4 C C4 SING N N 15
EX4 N C2 SING N N 16
EX4 F1 C20 SING N N 17
EX4 C25 C27 SING N N 18
EX4 C20 C16 SING N N 19
EX4 C20 F2 SING N N 20
EX4 C28 O DOUB N N 21
EX4 C28 C27 SING N N 22
EX4 C15 C16 DOUB Y N 23
EX4 C15 C14 SING Y N 24
EX4 C16 C17 SING Y N 25
EX4 C4 C5 SING N N 26
EX4 C4 C3 SING N N 27
EX4 C5 N1 DOUB Y N 28
EX4 C5 N2 SING Y N 29
EX4 C2 C3 SING N N 30
EX4 N1 C6 SING Y N 31
EX4 N2 C7 SING Y N 32
EX4 N2 C8 SING N N 33
EX4 C6 C7 DOUB Y N 34
EX4 C6 C14 SING N N 35
EX4 C14 C19 DOUB Y N 36
EX4 C8 C9 SING N N 37
EX4 C17 F SING N N 38
EX4 C17 C18 DOUB Y N 39
EX4 C19 C18 SING Y N 40
EX4 C9 N3 SING N N 41
EX4 N3 C13 SING N N 42
EX4 N3 C10 SING N N 43
EX4 C13 C12 SING N N 44
EX4 C10 C11 SING N N 45
EX4 C12 C11 SING N N 46
EX4 C7 H1 SING N N 47
EX4 C1 H2 SING N N 48
EX4 C1 H3 SING N N 49
EX4 C4 H4 SING N N 50
EX4 C3 H5 SING N N 51
EX4 C3 H6 SING N N 52
EX4 C2 H7 SING N N 53
EX4 C2 H8 SING N N 54
EX4 N6 H9 SING N N 55
EX4 C22 H10 SING N N 56
EX4 C27 H11 SING N N 57
EX4 C27 H12 SING N N 58
EX4 C25 H13 SING N N 59
EX4 C26 H14 SING N N 60
EX4 C26 H15 SING N N 61
EX4 C26 H16 SING N N 62
EX4 C H17 SING N N 63
EX4 C H18 SING N N 64
EX4 C8 H19 SING N N 65
EX4 C8 H20 SING N N 66
EX4 C9 H21 SING N N 67
EX4 C9 H22 SING N N 68
EX4 C13 H24 SING N N 69
EX4 C13 H25 SING N N 70
EX4 C12 H26 SING N N 71
EX4 C12 H27 SING N N 72
EX4 C11 H28 SING N N 73
EX4 C11 H29 SING N N 74
EX4 C10 H30 SING N N 75
EX4 C10 H31 SING N N 76
EX4 C19 H32 SING N N 77
EX4 C18 H33 SING N N 78
EX4 C15 H34 SING N N 79
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EX4 SMILES ACDLabs 12.01 c2c(c1ccc(F)c(c1)C(F)(F)F)nc(n2CCN3CCCC3)C4CCN(CC4)c6ncnc5NC(=O)CC(C)c56
EX4 InChI InChI 1.03 InChI=1S/C29H33F4N7O/c1-18-14-24(41)37-26-25(18)28(35-17-34-26)39-10-6-19(7-11-39)27-36-23(16-40(27)13-12-38-8-2-3-9-38)20-4-5-22(30)21(15-20)29(31,32)33/h4-5,15-19H,2-3,6-14H2,1H3,(H,34,35,37,41)/t18-/m1/s1
EX4 InChIKey InChI 1.03 XIYKGCYSJCRNDN-GOSISDBHSA-N
EX4 SMILES_CANONICAL CACTVS 3.385 C[C@@H]1CC(=O)Nc2ncnc(N3CCC(CC3)c4nc(cn4CCN5CCCC5)c6ccc(F)c(c6)C(F)(F)F)c12
EX4 SMILES CACTVS 3.385 C[CH]1CC(=O)Nc2ncnc(N3CCC(CC3)c4nc(cn4CCN5CCCC5)c6ccc(F)c(c6)C(F)(F)F)c12
EX4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[C@@H]1CC(=O)Nc2c1c(ncn2)N3CCC(CC3)c4nc(cn4CCN5CCCC5)c6ccc(c(c6)C(F)(F)F)F
EX4 SMILES "OpenEye OEToolkits" 2.0.6 CC1CC(=O)Nc2c1c(ncn2)N3CCC(CC3)c4nc(cn4CCN5CCCC5)c6ccc(c(c6)C(F)(F)F)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
EX4 "SYSTEMATIC NAME" ACDLabs 12.01 (5R)-4-(4-{4-[4-fluoro-3-(trifluoromethyl)phenyl]-1-[2-(pyrrolidin-1-yl)ethyl]-1H-imidazol-2-yl}piperidin-1-yl)-5-methyl-5,8-dihydropyrido[2,3-d]pyrimidin-7(6H)-one
EX4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 (5~{R})-4-[4-[4-[4-fluoranyl-3-(trifluoromethyl)phenyl]-1-(2-pyrrolidin-1-ylethyl)imidazol-2-yl]piperidin-1-yl]-5-methyl-6,8-dihydro-5~{H}-pyrido[2,3-d]pyrimidin-7-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EX4 'Create component' 2018-02-08 RCSB
EX4 'Initial release' 2018-05-02 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
EX4 C7 C 9.842 2.864 1
EX4 C6 C 11.342 2.881 2
EX4 C1 C 11.961 -3.171 3
EX4 N1 N 11.822 1.460 4
EX4 C5 C 10.619 0.564 5
EX4 C4 C 10.636 -0.936 6
EX4 C3 C 9.346 -1.701 7
EX4 C2 C 9.364 -3.201 8
EX4 O O 5.450 -8.488 9
EX4 C28 C 6.749 -7.738 10
EX4 N6 N 8.048 -8.488 11
EX4 C23 C 9.348 -7.738 12
EX4 N5 N 10.688 -8.540 13
EX4 C22 C 12.048 -7.769 14
EX4 N4 N 12.048 -6.206 15
EX4 C27 C 6.749 -6.238 16
EX4 C25 C 8.048 -5.488 17
EX4 C26 C 8.048 -3.988 18
EX4 C24 C 9.348 -6.238 19
EX4 C21 C 10.688 -5.436 20
EX4 N N 10.671 -3.936 21
EX4 C C 11.944 -1.671 22
EX4 N2 N 9.395 1.432 23
EX4 C8 C 7.974 0.952 24
EX4 C9 C 6.848 1.942 25
EX4 N3 N 5.427 1.462 26
EX4 C13 C 4.203 2.330 27
EX4 C12 C 3.000 1.434 28
EX4 C11 C 3.480 0.013 29
EX4 C10 C 4.980 0.030 30
EX4 C14 C 12.210 4.104 31
EX4 C19 C 13.703 3.965 32
EX4 C18 C 14.571 5.189 33
EX4 C17 C 13.945 6.552 34
EX4 F F 14.813 7.775 35
EX4 C16 C 12.451 6.691 36
EX4 C15 C 11.584 5.468 37
EX4 C20 C 11.826 8.054 38
EX4 F1 F 10.463 7.428 39
EX4 F2 F 13.189 8.680 40
EX4 F3 F 11.200 9.418 41
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
EX4 C22 N5 DOUBLE NONE 1
EX4 C22 N4 SINGLE NONE 2
EX4 N5 C23 SINGLE NONE 3
EX4 N4 C21 DOUBLE NONE 4
EX4 C23 N6 SINGLE NONE 5
EX4 C23 C24 DOUBLE NONE 6
EX4 C25 C26 SINGLE BEGINWEDGE 7
EX4 F3 C20 SINGLE NONE 8
EX4 C21 C24 SINGLE NONE 9
EX4 C21 N SINGLE NONE 10
EX4 C1 C SINGLE NONE 11
EX4 C1 N SINGLE NONE 12
EX4 N6 C28 SINGLE NONE 13
EX4 C24 C25 SINGLE NONE 14
EX4 C C4 SINGLE NONE 15
EX4 N C2 SINGLE NONE 16
EX4 F1 C20 SINGLE NONE 17
EX4 C25 C27 SINGLE NONE 18
EX4 C20 C16 SINGLE NONE 19
EX4 C20 F2 SINGLE NONE 20
EX4 C28 O DOUBLE NONE 21
EX4 C28 C27 SINGLE NONE 22
EX4 C15 C16 DOUBLE NONE 23
EX4 C15 C14 SINGLE NONE 24
EX4 C16 C17 SINGLE NONE 25
EX4 C4 C5 SINGLE NONE 26
EX4 C4 C3 SINGLE NONE 27
EX4 C5 N1 DOUBLE NONE 28
EX4 C5 N2 SINGLE NONE 29
EX4 C2 C3 SINGLE NONE 30
EX4 N1 C6 SINGLE NONE 31
EX4 N2 C7 SINGLE NONE 32
EX4 N2 C8 SINGLE NONE 33
EX4 C6 C7 DOUBLE NONE 34
EX4 C6 C14 SINGLE NONE 35
EX4 C14 C19 DOUBLE NONE 36
EX4 C8 C9 SINGLE NONE 37
EX4 C17 F SINGLE NONE 38
EX4 C17 C18 DOUBLE NONE 39
EX4 C19 C18 SINGLE NONE 40
EX4 C9 N3 SINGLE NONE 41
EX4 N3 C13 SINGLE NONE 42
EX4 N3 C10 SINGLE NONE 43
EX4 C13 C12 SINGLE NONE 44
EX4 C10 C11 SINGLE NONE 45
EX4 C12 C11 SINGLE NONE 46
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
EX4 MurckoScaffold S1 scaffold O=C1CCc2c(ncnc2N2CCC(c3nc(-c4ccccc4)cn3CCN3CCCC3)CC2)N1 InChI=1S/C27H33N7O/c35-24-9-8-22-25(31-24)28-19-29-27(22)33-14-10-21(11-15-33)26-30-23(20-6-2-1-3-7-20)18-34(26)17-16-32-12-4-5-13-32/h1-3,6-7,18-19,21H,4-5,8-17H2,(H,28,29,31,35) PKEXVDFYOHADMP-UHFFFAOYSA-N
EX4 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
EX4 imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
EX4 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
EX4 pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
EX4 Z445210538 F5 fragment 'c1c[nH]c(C2CCNCC2)n1' InChI=1S/C8H13N3/c1-3-9-4-2-7(1)8-10-5-6-11-8/h5-7,9H,1-4H2,(H,10,11) YJNKIVCXVAKYRD-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
EX4 C7 S1 1
EX4 C6 S1 1
EX4 C1 S1 1
EX4 N1 S1 1
EX4 C5 S1 1
EX4 C4 S1 1
EX4 C3 S1 1
EX4 C2 S1 1
EX4 O S1 1
EX4 C28 S1 1
EX4 N6 S1 1
EX4 C23 S1 1
EX4 N5 S1 1
EX4 C22 S1 1
EX4 N4 S1 1
EX4 C27 S1 1
EX4 C25 S1 1
EX4 C24 S1 1
EX4 C21 S1 1
EX4 N S1 1
EX4 C S1 1
EX4 N2 S1 1
EX4 C8 S1 1
EX4 C9 S1 1
EX4 N3 S1 1
EX4 C13 S1 1
EX4 C12 S1 1
EX4 C11 S1 1
EX4 C10 S1 1
EX4 C14 S1 1
EX4 C19 S1 1
EX4 C18 S1 1
EX4 C17 S1 1
EX4 C16 S1 1
EX4 C15 S1 1
EX4 N6 F1 1
EX4 C28 F1 1
EX4 O F1 1
EX4 C27 F1 1
EX4 C7 F2 1
EX4 C6 F2 1
EX4 N1 F2 1
EX4 C5 F2 1
EX4 N2 F2 1
EX4 C14 F3 1
EX4 C15 F3 1
EX4 C16 F3 1
EX4 C17 F3 1
EX4 C18 F3 1
EX4 C19 F3 1
EX4 C24 F4 1
EX4 C23 F4 1
EX4 N5 F4 1
EX4 C22 F4 1
EX4 N4 F4 1
EX4 C21 F4 1
EX4 C1 F5 1
EX4 C F5 1
EX4 C4 F5 1
EX4 C3 F5 1
EX4 C2 F5 1
EX4 N F5 1
EX4 C5 F5 1
EX4 N1 F5 1
EX4 C6 F5 1
EX4 C7 F5 1
EX4 N2 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id EX4
_pdbe_chem_comp_rdkit_properties.exactmw 571.268
_pdbe_chem_comp_rdkit_properties.amw 571.623
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 41
_pdbe_chem_comp_rdkit_properties.NumAtoms 74
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.517
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 281.761
_pdbe_chem_comp_rdkit_properties.tpsa 79.180
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.118
_pdbe_chem_comp_rdkit_properties.CrippenMR 142.411
_pdbe_chem_comp_rdkit_properties.chi0v 19.551
_pdbe_chem_comp_rdkit_properties.chi1v 10.761
_pdbe_chem_comp_rdkit_properties.chi2v 5.075
_pdbe_chem_comp_rdkit_properties.chi3v 5.075
_pdbe_chem_comp_rdkit_properties.chi4v 3.348
_pdbe_chem_comp_rdkit_properties.chi0n 52.551
_pdbe_chem_comp_rdkit_properties.chi1n 27.209
_pdbe_chem_comp_rdkit_properties.chi2n 5.075
_pdbe_chem_comp_rdkit_properties.chi3n 5.075
_pdbe_chem_comp_rdkit_properties.chi4n 3.348
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.540
_pdbe_chem_comp_rdkit_properties.kappa1 8.745
_pdbe_chem_comp_rdkit_properties.kappa2 11.034
_pdbe_chem_comp_rdkit_properties.kappa3 5.660
_pdbe_chem_comp_rdkit_properties.Phi 2.353
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
EX4 UniChem ChEMBL CHEMBL4128457
EX4 UniChem PDBe EX4
EX4 UniChem PubChem 133054002
EX4 UniChem BindingDb 50271974
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
EX4 C7 -2.272 -0.819 -1.430 ETKDGv3 1
EX4 C6 -1.357 -1.365 -0.640 ETKDGv3 2
EX4 C1 2.386 2.439 -0.583 ETKDGv3 3
EX4 N1 -0.472 -0.358 -0.152 ETKDGv3 4
EX4 C5 -0.902 0.758 -0.648 ETKDGv3 5
EX4 C4 -0.168 2.067 -0.456 ETKDGv3 6
EX4 C3 0.120 2.343 1.038 ETKDGv3 7
EX4 C2 1.338 1.571 1.568 ETKDGv3 8
EX4 O 6.427 -3.101 -1.419 ETKDGv3 9
EX4 C28 5.830 -2.109 -0.924 ETKDGv3 10
EX4 N6 6.306 -1.511 0.285 ETKDGv3 11
EX4 C23 5.620 -0.396 0.867 ETKDGv3 12
EX4 N5 6.232 0.317 1.953 ETKDGv3 13
EX4 C22 5.636 1.323 2.519 ETKDGv3 14
EX4 N4 4.347 1.748 2.056 ETKDGv3 15
EX4 C27 4.657 -1.500 -1.631 ETKDGv3 16
EX4 C25 3.677 -0.864 -0.623 ETKDGv3 17
EX4 C26 2.833 -1.936 0.077 ETKDGv3 18
EX4 C24 4.405 -0.018 0.411 ETKDGv3 19
EX4 C21 3.747 1.145 1.070 ETKDGv3 20
EX4 N 2.468 1.623 0.632 ETKDGv3 21
EX4 C 1.099 2.121 -1.354 ETKDGv3 22
EX4 N2 -2.030 0.578 -1.511 ETKDGv3 23
EX4 C8 -3.020 1.572 -1.929 ETKDGv3 24
EX4 C9 -4.061 1.806 -0.826 ETKDGv3 25
EX4 N3 -3.429 2.389 0.380 ETKDGv3 26
EX4 C13 -4.238 2.147 1.583 ETKDGv3 27
EX4 C12 -5.203 3.311 1.731 ETKDGv3 28
EX4 C11 -4.567 4.452 0.960 ETKDGv3 29
EX4 C10 -3.338 3.855 0.285 ETKDGv3 30
EX4 C14 -1.261 -2.795 -0.267 ETKDGv3 31
EX4 C19 -0.537 -3.162 0.804 ETKDGv3 32
EX4 C18 -0.416 -4.584 1.175 ETKDGv3 33
EX4 C17 -1.040 -5.524 0.456 ETKDGv3 34
EX4 F -0.895 -6.828 0.803 ETKDGv3 35
EX4 C16 -1.868 -5.143 -0.719 ETKDGv3 36
EX4 C15 -1.943 -3.844 -1.071 ETKDGv3 37
EX4 C20 -2.520 -6.218 -1.555 ETKDGv3 38
EX4 F1 -3.060 -7.194 -0.737 ETKDGv3 39
EX4 F2 -1.570 -6.794 -2.377 ETKDGv3 40
EX4 F3 -3.540 -5.703 -2.338 ETKDGv3 41
EX4 H1 -3.107 -1.324 -1.897 ETKDGv3 42
EX4 H2 3.262 2.253 -1.243 ETKDGv3 43
EX4 H3 2.398 3.514 -0.302 ETKDGv3 44
EX4 H4 -0.836 2.886 -0.787 ETKDGv3 45
EX4 H5 -0.772 2.100 1.656 ETKDGv3 46
EX4 H6 0.313 3.431 1.166 ETKDGv3 47
EX4 H7 1.063 0.513 1.751 ETKDGv3 48
EX4 H8 1.638 2.011 2.544 ETKDGv3 49
EX4 H9 7.186 -1.864 0.725 ETKDGv3 50
EX4 H10 6.114 1.844 3.336 ETKDGv3 51
EX4 H11 5.037 -0.712 -2.316 ETKDGv3 52
EX4 H12 4.138 -2.266 -2.249 ETKDGv3 53
EX4 H13 2.987 -0.225 -1.206 ETKDGv3 54
EX4 H14 2.234 -2.502 -0.668 ETKDGv3 55
EX4 H15 2.132 -1.459 0.792 ETKDGv3 56
EX4 H16 3.478 -2.647 0.637 ETKDGv3 57
EX4 H17 0.962 2.896 -2.140 ETKDGv3 58
EX4 H18 1.242 1.160 -1.894 ETKDGv3 59
EX4 H19 -3.542 1.196 -2.835 ETKDGv3 60
EX4 H20 -2.522 2.518 -2.220 ETKDGv3 61
EX4 H21 -4.876 2.458 -1.213 ETKDGv3 62
EX4 H22 -4.520 0.818 -0.600 ETKDGv3 63
EX4 H24 -4.776 1.174 1.563 ETKDGv3 64
EX4 H25 -3.557 2.124 2.462 ETKDGv3 65
EX4 H26 -6.183 3.045 1.278 ETKDGv3 66
EX4 H27 -5.351 3.574 2.801 ETKDGv3 67
EX4 H28 -5.275 4.844 0.198 ETKDGv3 68
EX4 H29 -4.275 5.279 1.644 ETKDGv3 69
EX4 H30 -2.425 4.187 0.827 ETKDGv3 70
EX4 H31 -3.247 4.217 -0.763 ETKDGv3 71
EX4 H32 -0.036 -2.425 1.419 ETKDGv3 72
EX4 H33 0.186 -4.864 2.029 ETKDGv3 73
EX4 H34 -2.489 -3.556 -1.959 ETKDGv3 74
#