data_EXP
#
_chem_comp.id EXP
_chem_comp.name 2-{[(3-bromophenyl)methyl]amino}-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7(6H)-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H12 Br N5 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-02-08
_chem_comp.pdbx_modified_date 2018-03-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 334.171
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code EXP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6CCM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EXP C2 C1 C 0 1 Y N N N N N 170.696 171.650 56.761 3.710 -0.202 -0.544 C2 EXP 1
EXP C12 C2 C 0 1 N N N N N N 171.140 175.927 58.371 -0.412 -1.053 -0.550 C12 EXP 2
EXP C13 C3 C 0 1 Y N N N N N 169.193 176.181 56.738 -2.737 -0.141 -0.382 C13 EXP 3
EXP C14 C4 C 0 1 Y N N N N N 168.601 176.755 55.605 -4.061 -0.254 0.003 C14 EXP 4
EXP C15 C5 C 0 1 Y N N N N N 170.485 176.571 57.137 -1.853 -1.173 -0.126 C15 EXP 5
EXP C17 C6 C 0 1 N N N N N N 170.541 168.390 55.136 7.102 -0.130 -2.056 C17 EXP 6
EXP C18 C7 C 0 1 Y N N N N N 170.590 178.110 55.241 -3.615 -2.430 0.898 C18 EXP 7
EXP C19 C8 C 0 1 Y N N N N N 169.291 177.724 54.854 -4.500 -1.399 0.644 C19 EXP 8
EXP C20 C9 C 0 1 Y N N N N N 171.185 177.534 56.379 -2.291 -2.315 0.518 C20 EXP 9
EXP N1 N1 N 0 1 Y N N N N N 171.599 172.347 56.046 3.813 0.336 0.703 N1 EXP 10
EXP N3 N2 N 0 1 Y N N N N N 170.216 172.316 57.722 2.439 -0.536 -0.720 N3 EXP 11
EXP N4 N3 N 0 1 Y N N N N N 171.629 173.621 56.742 2.528 0.305 1.266 N4 EXP 12
EXP C5 C10 C 0 1 N N N N N N 172.224 171.852 54.960 4.992 0.779 1.187 C5 EXP 13
EXP C6 C11 C 0 1 Y N N N N N 170.841 173.605 57.759 1.733 -0.230 0.370 C6 EXP 14
EXP C7 C12 C 0 1 N N N N N N 171.866 170.457 54.617 6.206 0.655 0.285 C7 EXP 15
EXP N8 N4 N 0 1 N N N N N N 170.406 170.415 56.439 4.771 -0.336 -1.383 N8 EXP 16
EXP C9 C13 C 0 1 N N N N N N 170.956 169.823 55.393 5.967 0.041 -1.079 C9 EXP 17
EXP N10 N5 N 0 1 N N N N N N 170.627 174.572 58.606 0.366 -0.444 0.531 N10 EXP 18
EXP O11 O1 O 0 1 N N N N N N 172.989 172.516 54.283 5.078 1.256 2.294 O11 EXP 19
EXP BR BR1 BR 0 0 N N N N N N 166.902 176.202 55.129 -5.271 1.157 -0.346 BR16 EXP 20
EXP H1 H1 H 0 1 N N N N N N 172.227 175.875 58.213 -0.015 -2.043 -0.772 H1 EXP 21
EXP H2 H2 H 0 1 N N N N N N 170.927 176.548 59.254 -0.347 -0.428 -1.441 H2 EXP 22
EXP H3 H3 H 0 1 N N N N N N 168.656 175.437 57.307 -2.396 0.750 -0.886 H3 EXP 23
EXP H4 H4 H 0 1 N N N N N N 169.818 168.074 55.902 7.568 -1.104 -1.906 H4 EXP 24
EXP H5 H5 H 0 1 N N N N N N 170.077 168.315 54.141 6.717 -0.065 -3.074 H5 EXP 25
EXP H6 H6 H 0 1 N N N N N N 171.427 167.739 55.177 7.841 0.655 -1.896 H6 EXP 26
EXP H7 H7 H 0 1 N N N N N N 171.129 178.848 54.665 -3.957 -3.322 1.402 H7 EXP 27
EXP H8 H8 H 0 1 N N N N N N 168.828 178.169 53.986 -5.534 -1.489 0.941 H8 EXP 28
EXP H9 H9 H 0 1 N N N N N N 172.181 177.830 56.673 -1.600 -3.121 0.717 H9 EXP 29
EXP H10 H10 H 0 1 N N N N N N 171.471 170.464 53.590 6.623 1.651 0.140 H10 EXP 30
EXP H11 H11 H 0 1 N N N N N N 172.792 169.865 54.650 6.952 0.053 0.803 H11 EXP 31
EXP H12 H12 H 0 1 N N N N N N 169.634 174.657 58.691 -0.070 -0.191 1.360 H12 EXP 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EXP O11 C5 DOUB N N 1
EXP C7 C5 SING N N 2
EXP C7 C9 SING N N 3
EXP C19 C18 DOUB Y N 4
EXP C19 C14 SING Y N 5
EXP C5 N1 SING N N 6
EXP BR C14 SING N N 7
EXP C17 C9 SING N N 8
EXP C18 C20 SING Y N 9
EXP C9 N8 DOUB N N 10
EXP C14 C13 DOUB Y N 11
EXP N1 N4 SING Y N 12
EXP N1 C2 SING Y N 13
EXP C20 C15 DOUB Y N 14
EXP N8 C2 SING N N 15
EXP C13 C15 SING Y N 16
EXP N4 C6 DOUB Y N 17
EXP C2 N3 DOUB Y N 18
EXP C15 C12 SING N N 19
EXP N3 C6 SING Y N 20
EXP C6 N10 SING N N 21
EXP C12 N10 SING N N 22
EXP C12 H1 SING N N 23
EXP C12 H2 SING N N 24
EXP C13 H3 SING N N 25
EXP C17 H4 SING N N 26
EXP C17 H5 SING N N 27
EXP C17 H6 SING N N 28
EXP C18 H7 SING N N 29
EXP C19 H8 SING N N 30
EXP C20 H9 SING N N 31
EXP C7 H10 SING N N 32
EXP C7 H11 SING N N 33
EXP N10 H12 SING N N 34
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EXP SMILES ACDLabs 12.01 c12nc(nn1C(CC(C)=N2)=O)NCc3cc(ccc3)Br
EXP InChI InChI 1.03 InChI=1S/C13H12BrN5O/c1-8-5-11(20)19-13(16-8)17-12(18-19)15-7-9-3-2-4-10(14)6-9/h2-4,6H,5,7H2,1H3,(H,15,18)
EXP InChIKey InChI 1.03 NONMKRIVUVFGSW-UHFFFAOYSA-N
EXP SMILES_CANONICAL CACTVS 3.385 CC1=Nc2nc(NCc3cccc(Br)c3)nn2C(=O)C1
EXP SMILES CACTVS 3.385 CC1=Nc2nc(NCc3cccc(Br)c3)nn2C(=O)C1
EXP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC1=Nc2nc(nn2C(=O)C1)NCc3cccc(c3)Br
EXP SMILES "OpenEye OEToolkits" 2.0.6 CC1=Nc2nc(nn2C(=O)C1)NCc3cccc(c3)Br
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
EXP "SYSTEMATIC NAME" ACDLabs 12.01 2-{[(3-bromophenyl)methyl]amino}-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7(6H)-one
EXP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 2-[(3-bromophenyl)methylamino]-5-methyl-6~{H}-[1,2,4]triazolo[1,5-a]pyrimidin-7-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EXP 'Create component' 2018-02-08 RCSB
EXP 'Initial release' 2018-03-14 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
EXP C2 C 6.897 -0.301 1
EXP C12 C 11.442 -0.851 2
EXP C13 C 13.692 -2.150 3
EXP C14 C 15.192 -2.150 4
EXP C15 C 12.942 -0.851 5
EXP C17 C 3.000 -1.052 6
EXP C18 C 15.192 0.449 7
EXP C19 C 15.942 -0.851 8
EXP C20 C 13.692 0.449 9
EXP N1 N 6.897 1.198 10
EXP N3 N 8.316 -0.759 11
EXP N4 N 8.316 1.656 12
EXP C5 C 5.598 1.948 13
EXP C6 C 9.192 0.449 14
EXP C7 C 4.299 1.198 15
EXP N8 N 5.598 -1.052 16
EXP C9 C 4.299 -0.301 17
EXP N10 N 10.692 0.449 18
EXP O11 O 5.598 3.449 19
EXP BR Br 15.942 -3.449 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
EXP O11 C5 DOUBLE NONE 1
EXP C7 C5 SINGLE NONE 2
EXP C7 C9 SINGLE NONE 3
EXP C19 C18 DOUBLE NONE 4
EXP C19 C14 SINGLE NONE 5
EXP C5 N1 SINGLE NONE 6
EXP BR C14 SINGLE NONE 7
EXP C17 C9 SINGLE NONE 8
EXP C18 C20 SINGLE NONE 9
EXP C9 N8 DOUBLE NONE 10
EXP C14 C13 DOUBLE NONE 11
EXP N1 N4 SINGLE NONE 12
EXP N1 C2 SINGLE NONE 13
EXP C20 C15 DOUBLE NONE 14
EXP N8 C2 SINGLE NONE 15
EXP C13 C15 SINGLE NONE 16
EXP N4 C6 DOUBLE NONE 17
EXP C2 N3 DOUBLE NONE 18
EXP C15 C12 SINGLE NONE 19
EXP N3 C6 SINGLE NONE 20
EXP C6 N10 SINGLE NONE 21
EXP C12 N10 SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
EXP MurckoScaffold S1 scaffold O=C1CC=Nc2nc(NCc3ccccc3)nn21 InChI=1S/C12H11N5O/c18-10-6-7-13-12-15-11(16-17(10)12)14-8-9-4-2-1-3-5-9/h1-5,7H,6,8H2,(H,14,16) IXXSNOQQWFCJCM-UHFFFAOYSA-N
EXP phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
EXP C2 S1 1
EXP C12 S1 1
EXP C13 S1 1
EXP C14 S1 1
EXP C15 S1 1
EXP C18 S1 1
EXP C19 S1 1
EXP C20 S1 1
EXP N1 S1 1
EXP N3 S1 1
EXP N4 S1 1
EXP C5 S1 1
EXP C6 S1 1
EXP C7 S1 1
EXP N8 S1 1
EXP C9 S1 1
EXP N10 S1 1
EXP O11 S1 1
EXP C13 F1 1
EXP C14 F1 1
EXP C19 F1 1
EXP C18 F1 1
EXP C20 F1 1
EXP C15 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id EXP
_pdbe_chem_comp_rdkit_properties.exactmw 333.023
_pdbe_chem_comp_rdkit_properties.amw 334.177
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.231
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 140.526
_pdbe_chem_comp_rdkit_properties.tpsa 72.170
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.973
_pdbe_chem_comp_rdkit_properties.CrippenMR 77.589
_pdbe_chem_comp_rdkit_properties.chi0v 11.108
_pdbe_chem_comp_rdkit_properties.chi1v 5.899
_pdbe_chem_comp_rdkit_properties.chi2v 2.467
_pdbe_chem_comp_rdkit_properties.chi3v 2.467
_pdbe_chem_comp_rdkit_properties.chi4v 1.612
_pdbe_chem_comp_rdkit_properties.chi0n 21.522
_pdbe_chem_comp_rdkit_properties.chi1n 11.053
_pdbe_chem_comp_rdkit_properties.chi2n 2.071
_pdbe_chem_comp_rdkit_properties.chi3n 2.071
_pdbe_chem_comp_rdkit_properties.chi4n 1.314
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.020
_pdbe_chem_comp_rdkit_properties.kappa1 5.069
_pdbe_chem_comp_rdkit_properties.kappa2 5.163
_pdbe_chem_comp_rdkit_properties.kappa3 2.622
_pdbe_chem_comp_rdkit_properties.Phi 1.308
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
EXP UniChem PDBe EXP
EXP UniChem PubChem 125299324
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
EXP C2 -2.319 -0.366 0.873 ETKDGv3 1
EXP C12 1.891 0.685 -0.745 ETKDGv3 2
EXP C13 4.201 1.023 0.366 ETKDGv3 3
EXP C14 5.492 0.689 0.499 ETKDGv3 4
EXP C15 3.350 0.336 -0.637 ETKDGv3 5
EXP C17 -5.925 -1.218 1.395 ETKDGv3 6
EXP C18 5.305 -1.006 -1.247 ETKDGv3 7
EXP C19 6.071 -0.374 -0.351 ETKDGv3 8
EXP C20 3.879 -0.644 -1.392 ETKDGv3 9
EXP N1 -2.323 0.662 -0.069 ETKDGv3 10
EXP N3 -1.135 -0.818 1.116 ETKDGv3 11
EXP N4 -1.003 0.845 -0.468 ETKDGv3 12
EXP C5 -3.516 1.053 -0.730 ETKDGv3 13
EXP C6 -0.325 0.001 0.253 ETKDGv3 14
EXP C7 -4.829 0.500 -0.232 ETKDGv3 15
EXP N8 -3.532 -0.953 1.334 ETKDGv3 16
EXP C9 -4.688 -0.571 0.857 ETKDGv3 17
EXP N10 1.095 -0.144 0.158 ETKDGv3 18
EXP O11 -3.478 1.855 -1.701 ETKDGv3 19
EXP BR 6.588 1.575 1.787 ETKDGv3 20
EXP H1 1.745 1.756 -0.488 ETKDGv3 21
EXP H2 1.538 0.539 -1.790 ETKDGv3 22
EXP H3 3.776 1.797 0.993 ETKDGv3 23
EXP H4 -6.834 -0.806 0.908 ETKDGv3 24
EXP H5 -5.995 -1.036 2.488 ETKDGv3 25
EXP H6 -5.886 -2.311 1.208 ETKDGv3 26
EXP H7 5.726 -1.788 -1.866 ETKDGv3 27
EXP H8 7.114 -0.642 -0.245 ETKDGv3 28
EXP H9 3.271 -1.178 -2.111 ETKDGv3 29
EXP H10 -5.376 0.062 -1.093 ETKDGv3 30
EXP H11 -5.434 1.340 0.171 ETKDGv3 31
EXP H12 1.557 -0.864 0.759 ETKDGv3 32
#