data_EZH
#
_chem_comp.id EZH
_chem_comp.name cis-oxyresveratrol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H12 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-05-10
_chem_comp.pdbx_modified_date 2018-09-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 244.243
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code EZH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6GIC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EZH C4 C1 C 0 1 Y N N N N N 8.146 5.432 2.763 -0.812 -0.096 -1.164 C4 EZH 1
EZH C5 C2 C 0 1 Y N N N N N 7.354 4.510 3.446 -1.350 -1.106 -0.362 C5 EZH 2
EZH C6 C3 C 0 1 N N N N N N 7.942 3.505 4.334 -0.649 -2.393 -0.223 C6 EZH 3
EZH C7 C4 C 0 1 N N N N N N 9.187 3.196 4.617 0.689 -2.419 -0.103 C7 EZH 4
EZH C8 C5 C 0 1 Y N N N N N 10.535 3.382 4.074 1.437 -1.163 0.085 C8 EZH 5
EZH C10 C6 C 0 1 Y N N N N N 12.833 3.742 4.724 3.406 0.169 -0.297 C10 EZH 6
EZH C13 C7 C 0 1 Y N N N N N 12.246 3.749 2.404 1.587 1.057 1.005 C13 EZH 7
EZH C15 C8 C 0 1 Y N N N N N 10.910 3.552 2.736 0.880 -0.121 0.830 C15 EZH 8
EZH O1 O1 O 0 1 N N N N N N 5.715 7.937 1.738 -3.309 2.514 -0.744 O1 EZH 9
EZH C2 C9 C 0 1 Y N N N N N 6.242 6.802 2.289 -2.665 1.325 -0.614 C2 EZH 10
EZH C3 C10 C 0 1 Y N N N N N 7.603 6.565 2.190 -1.469 1.109 -1.287 C3 EZH 11
EZH C9 C11 C 0 1 Y N N N N N 11.518 3.471 5.064 2.707 -1.013 -0.477 C9 EZH 12
EZH O11 O2 O 0 1 N N N N N N 13.722 3.943 5.746 4.642 0.316 -0.842 O11 EZH 13
EZH C12 C12 C 0 1 Y N N N N N 13.211 3.866 3.395 2.846 1.203 0.440 C12 EZH 14
EZH O14 O3 O 0 1 N N N N N N 12.675 3.722 1.101 1.046 2.072 1.729 O14 EZH 15
EZH C16 C13 C 0 1 Y N N N N N 5.974 4.745 3.496 -2.562 -0.888 0.311 C16 EZH 16
EZH O17 O4 O 0 1 N N N N N N 5.136 3.855 4.088 -3.092 -1.863 1.093 O17 EZH 17
EZH C18 C14 C 0 1 Y N N N N N 5.425 5.891 2.944 -3.214 0.324 0.175 C18 EZH 18
EZH H21 H1 H 0 1 N N N N N N 9.208 5.256 2.680 0.121 -0.259 -1.684 H21 EZH 19
EZH H22 H2 H 0 1 N N N N N N 7.213 2.903 4.856 -1.209 -3.316 -0.217 H22 EZH 20
EZH H23 H4 H 0 1 N N N N N N 9.230 2.629 5.535 1.217 -3.361 -0.145 H23 EZH 21
EZH H28 H6 H 0 1 N N N N N N 10.160 3.530 1.959 -0.100 -0.234 1.270 H28 EZH 22
EZH H19 H7 H 0 1 N N N N N N 4.777 7.956 1.888 -3.059 3.171 -0.081 H19 EZH 23
EZH H20 H8 H 0 1 N N N N N N 8.238 7.264 1.666 -1.051 1.888 -1.907 H20 EZH 24
EZH H24 H9 H 0 1 N N N N N N 11.250 3.328 6.100 3.144 -1.817 -1.050 H24 EZH 25
EZH H25 H10 H 0 1 N N N N N N 13.283 3.814 6.578 4.635 0.686 -1.736 H25 EZH 26
EZH H26 H11 H 0 1 N N N N N N 14.243 4.051 3.135 3.394 2.123 0.578 H26 EZH 27
EZH H27 H12 H 0 1 N N N N N N 13.612 3.876 1.072 1.256 2.037 2.672 H27 EZH 28
EZH H29 H13 H 0 1 N N N N N N 5.638 3.121 4.422 -2.802 -1.829 2.015 H29 EZH 29
EZH H30 H14 H 0 1 N N N N N N 4.364 6.075 3.023 -4.145 0.497 0.696 H30 EZH 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EZH O14 C13 SING N N 1
EZH O1 C2 SING N N 2
EZH C3 C2 DOUB Y N 3
EZH C3 C4 SING Y N 4
EZH C2 C18 SING Y N 5
EZH C13 C15 DOUB Y N 6
EZH C13 C12 SING Y N 7
EZH C15 C8 SING Y N 8
EZH C4 C5 DOUB Y N 9
EZH C18 C16 DOUB Y N 10
EZH C12 C10 DOUB Y N 11
EZH C5 C16 SING Y N 12
EZH C5 C6 SING N N 13
EZH C16 O17 SING N N 14
EZH C8 C7 SING N N 15
EZH C8 C9 DOUB Y N 16
EZH C6 C7 DOUB N Z 17
EZH C10 C9 SING Y N 18
EZH C10 O11 SING N N 19
EZH C4 H21 SING N N 20
EZH C6 H22 SING N N 21
EZH C7 H23 SING N N 22
EZH C15 H28 SING N N 23
EZH O1 H19 SING N N 24
EZH C3 H20 SING N N 25
EZH C9 H24 SING N N 26
EZH O11 H25 SING N N 27
EZH C12 H26 SING N N 28
EZH O14 H27 SING N N 29
EZH O17 H29 SING N N 30
EZH C18 H30 SING N N 31
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EZH InChI InChI 1.03 InChI=1S/C14H12O4/c15-11-4-3-10(14(18)8-11)2-1-9-5-12(16)7-13(17)6-9/h1-8,15-18H/b2-1-
EZH InChIKey InChI 1.03 PDHAOJSHSJQANO-UPHRSURJSA-N
EZH SMILES_CANONICAL CACTVS 3.385 Oc1ccc(\C=C/c2cc(O)cc(O)c2)c(O)c1
EZH SMILES CACTVS 3.385 Oc1ccc(C=Cc2cc(O)cc(O)c2)c(O)c1
EZH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1cc(c(cc1O)O)/C=C\c2cc(cc(c2)O)O
EZH SMILES "OpenEye OEToolkits" 2.0.6 c1cc(c(cc1O)O)C=Cc2cc(cc(c2)O)O
#
_pdbx_chem_comp_identifier.comp_id EZH
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier 4-[(~{Z})-2-[3,5-bis(oxidanyl)phenyl]ethenyl]benzene-1,3-diol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EZH 'Create component' 2018-05-10 EBI
EZH 'Initial release' 2018-09-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
EZH C4 C 7.702 0.142 1
EZH C5 C 6.404 0.892 2
EZH C6 C 6.404 2.393 3
EZH C7 C 7.702 3.143 4
EZH C8 C 9.002 2.393 5
EZH C10 C 10.301 0.142 6
EZH C13 C 11.600 2.393 7
EZH C15 C 10.301 3.143 8
EZH O1 O 6.404 -3.607 9
EZH C2 C 6.404 -2.107 10
EZH C3 C 7.702 -1.357 11
EZH C9 C 9.002 0.892 12
EZH O11 O 10.301 -1.357 13
EZH C12 C 11.600 0.892 14
EZH O14 O 12.899 3.143 15
EZH C16 C 5.104 0.142 16
EZH O17 O 3.805 0.892 17
EZH C18 C 5.104 -1.357 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
EZH O14 C13 SINGLE NONE 1
EZH O1 C2 SINGLE NONE 2
EZH C3 C2 SINGLE NONE 3
EZH C3 C4 DOUBLE NONE 4
EZH C2 C18 DOUBLE NONE 5
EZH C13 C15 DOUBLE NONE 6
EZH C13 C12 SINGLE NONE 7
EZH C15 C8 SINGLE NONE 8
EZH C4 C5 SINGLE NONE 9
EZH C18 C16 SINGLE NONE 10
EZH C12 C10 DOUBLE NONE 11
EZH C5 C16 DOUBLE NONE 12
EZH C5 C6 SINGLE ENDUPRIGHT 13
EZH C16 O17 SINGLE NONE 14
EZH C8 C7 SINGLE ENDUPRIGHT 15
EZH C8 C9 DOUBLE NONE 16
EZH C6 C7 DOUBLE NONE 17
EZH C10 C9 SINGLE NONE 18
EZH C10 O11 SINGLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
EZH MurckoScaffold S1 scaffold C(=C\c1ccccc1)\c1ccccc1 InChI=1S/C14H12/c1-3-7-13(8-4-1)11-12-14-9-5-2-6-10-14/h1-12H/b12-11- PJANXHGTPQOBST-QXMHVHEDSA-N
EZH phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
EZH C4 S1 1
EZH C5 S1 1
EZH C6 S1 1
EZH C7 S1 1
EZH C8 S1 1
EZH C10 S1 1
EZH C13 S1 1
EZH C15 S1 1
EZH C2 S1 1
EZH C3 S1 1
EZH C9 S1 1
EZH C12 S1 1
EZH C16 S1 1
EZH C18 S1 1
EZH C4 F1 1
EZH C3 F1 1
EZH C2 F1 1
EZH C18 F1 1
EZH C16 F1 1
EZH C5 F1 1
EZH C8 F1 2
EZH C15 F1 2
EZH C13 F1 2
EZH C12 F1 2
EZH C10 F1 2
EZH C9 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id EZH
_pdbe_chem_comp_rdkit_properties.exactmw 244.074
_pdbe_chem_comp_rdkit_properties.amw 244.246
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 120.912
_pdbe_chem_comp_rdkit_properties.tpsa 80.920
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.720
_pdbe_chem_comp_rdkit_properties.CrippenMR 65.499
_pdbe_chem_comp_rdkit_properties.chi0v 8.633
_pdbe_chem_comp_rdkit_properties.chi1v 4.566
_pdbe_chem_comp_rdkit_properties.chi2v 1.772
_pdbe_chem_comp_rdkit_properties.chi3v 1.772
_pdbe_chem_comp_rdkit_properties.chi4v 1.072
_pdbe_chem_comp_rdkit_properties.chi0n 20.633
_pdbe_chem_comp_rdkit_properties.chi1n 10.199
_pdbe_chem_comp_rdkit_properties.chi2n 1.772
_pdbe_chem_comp_rdkit_properties.chi3n 1.772
_pdbe_chem_comp_rdkit_properties.chi4n 1.072
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.620
_pdbe_chem_comp_rdkit_properties.kappa1 3.949
_pdbe_chem_comp_rdkit_properties.kappa2 4.710
_pdbe_chem_comp_rdkit_properties.kappa3 2.735
_pdbe_chem_comp_rdkit_properties.Phi 1.033
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
EZH UniChem PDBe EZH
EZH UniChem ZINC ZINC000005641949
EZH UniChem PubChem 92272165
EZH UniChem Nikkaji J3.300.495H
EZH UniChem ACTor 4721-07-7
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
EZH C4 1.340 -0.118 1.111 ETKDGv3 1
EZH C5 1.622 -0.885 -0.132 ETKDGv3 2
EZH C6 0.856 -2.120 -0.413 ETKDGv3 3
EZH C7 -0.480 -2.223 -0.339 ETKDGv3 4
EZH C8 -1.409 -1.089 -0.135 ETKDGv3 5
EZH C10 -3.438 -0.135 0.860 ETKDGv3 6
EZH C13 -2.078 1.213 -0.660 ETKDGv3 7
EZH C15 -1.216 0.204 -0.844 ETKDGv3 8
EZH O1 3.852 2.582 0.801 ETKDGv3 9
EZH C2 3.119 1.438 0.502 ETKDGv3 10
EZH C3 2.041 0.982 1.405 ETKDGv3 11
EZH C9 -2.487 -1.251 0.650 ETKDGv3 12
EZH O11 -4.539 -0.295 1.697 ETKDGv3 13
EZH C12 -3.238 1.036 0.242 ETKDGv3 14
EZH O14 -1.880 2.420 -1.324 ETKDGv3 15
EZH C16 2.620 -0.473 -0.948 ETKDGv3 16
EZH O17 2.946 -1.146 -2.129 ETKDGv3 17
EZH C18 3.393 0.743 -0.609 ETKDGv3 18
EZH H21 0.568 -0.451 1.793 ETKDGv3 19
EZH H22 1.418 -3.016 -0.646 ETKDGv3 20
EZH H23 -0.914 -3.211 -0.439 ETKDGv3 21
EZH H28 -0.387 0.332 -1.528 ETKDGv3 22
EZH H19 3.663 3.123 1.636 ETKDGv3 23
EZH H20 1.826 1.533 2.312 ETKDGv3 24
EZH H24 -2.662 -2.194 1.155 ETKDGv3 25
EZH H25 -4.711 -1.171 2.176 ETKDGv3 26
EZH H26 -3.930 1.855 0.394 ETKDGv3 27
EZH H27 -2.519 3.197 -1.202 ETKDGv3 28
EZH H29 2.440 -1.955 -2.467 ETKDGv3 29
EZH H30 4.184 1.073 -1.271 ETKDGv3 30
#